Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D6V	27223	2024-02-24	2022-06-06	3.2	3.13	3.13	3.2	0.003	0.57	0.0	0.04	13.29	0.00	2.204	5.05	0.00	1.7	98.3	0.0	2.14	0.79	0.86	3.28	3.2	0.003	0.49	0.0	0.04	14.77	0.00	2.170	5.62	1.34	1.7	98.3	0.0	2.39	0.33	0.79	0.87	2.81	46380	6146	35	0	0	0	0	logfile
✔	8D67	27219	2024-02-15	2022-06-06	3.3	3.45	2.92	3.5	0.009	0.97	0.0	0.07	13.90	0.01	2.261	6.52	0.36	7.5	92.5	0.0	-1.52	0.68	0.82	3.08	3.5	0.003	0.52	0.0	0.05	15.52	0.00	2.231	4.80	1.75	5.8	94.2	0.0	-0.32	1.15	0.69	0.83	2.62	12570	1540	10	0	0	0	0	logfile
✔	7Y0J	33547	2024-02-18	2022-06-05	3.62	3.92	3.55	4.0	0.003	0.69	0.0	0.05	14.37	0.01	2.181	7.49	0.13	5.2	94.8	0.0	-0.97	0.70	0.73	1.59	4.0	0.004	0.67	0.0	0.05	15.70	0.00	2.098	14.13	2.04	6.4	93.6	0.0	-0.61	0.49	0.71	0.75	1.54	20717	2616	23	0	12	0	0	logfile
✔	7Y0N	33550	2024-02-21	2022-06-05	3.8	4.14	3.88	3.9	0.004	0.73	0.0	0.05	13.51	0.01	2.259	5.96	0.03	6.2	93.8	0.0	-2.36	0.81	0.80	1.70	3.9	0.004	0.58	0.0	0.04	14.63	0.00	2.139	10.80	1.42	7.2	92.8	0.0	-1.23	1.15	0.81	0.79	1.58	31989	4047	30	0	63	0	0	logfile
✔	7Y0o	33551	2024-02-13	2022-06-05	4.4	3.19	4.10	3.0	0.004	0.93	0.0	0.06	15.07	0.01	2.254	9.72	0.00	9.8	90.1	0.2	-3.24	0.65	0.55	—	3.0	0.003	0.70	0.0	0.05	15.14	0.00	2.112	16.85	0.00	10.5	89.5	0.0	-3.12	1.13	0.66	0.56	—	4185	541	6	0	0	18	0	logfile
✔	7Y0H	33542	2024-02-20	2022-06-05	3.56	3.83	3.72	3.8	0.003	0.60	0.0	0.04	14.66	0.00	1.981	6.27	0.07	4.7	95.3	0.0	-0.21	0.72	0.77	1.96	3.8	0.003	0.65	0.0	0.04	16.13	0.00	2.120	12.98	2.44	5.2	94.7	0.0	-0.30	0.46	0.71	0.76	1.21	26470	3336	23	0	12	0	0	logfile
✔	7Y0D	33540	2024-02-18	2022-06-04	3.1	3.61	3.03	3.1	0.003	0.61	0.0	0.04	13.79	0.00	2.158	13.54	0.00	5.1	94.9	0.0	0.77	0.84	0.74	0.91	3.1	0.003	0.66	0.0	0.04	15.42	0.00	2.145	14.57	1.90	4.5	95.5	0.0	1.00	1.13	0.85	0.76	0.86	21224	2768	8	0	0	0	0	logfile
✔	8D5C	27208	2024-02-19	2022-06-04	3.9	4.25	3.98	4.2	0.002	0.48	0.0	0.04	13.15	0.00	1.991	32.36	0.00	7.0	93.0	0.0	-1.61	0.65	0.64	1.09	4.2	0.002	0.49	0.0	0.04	14.92	0.00	1.955	36.61	1.18	9.5	90.5	0.0	-1.52	1.24	0.67	0.67	0.92	26109	2730	15	0	0	0	4739	logfile
✔	8D56	27206	2024-02-20	2022-06-04	3.0	3.68	3.06	3.3	0.012	1.73	0.0	0.11	16.19	0.01	1.457	9.46	2.60	7.6	92.2	0.1	-2.04	0.86	0.84	3.50	3.3	0.003	0.71	0.0	0.04	14.36	0.00	2.154	7.96	1.71	4.2	95.8	0.0	-0.07	0.60	0.85	0.85	3.15	27674	3353	36	0	102	0	0	logfile
✔	8D5A	27207	2024-02-20	2022-06-04	3.1	3.80	3.21	3.5	0.016	2.00	17.0	0.13	16.44	0.01	1.589	6.83	2.22	6.7	91.7	1.6	-2.19	0.85	0.86	3.15	3.5	0.002	0.67	0.0	0.04	14.15	0.00	2.156	6.10	1.95	5.1	94.7	0.2	-0.24	0.60	0.86	0.87	2.54	27711	3365	35	0	99	0	0	logfile
✔	7XZY	33534	2024-02-15	2022-06-03	3.97	4.47	3.88	3.9	0.004	0.69	0.0	0.04	27.84	0.00	2.062	14.33	0.16	1.9	98.1	0.0	1.04	0.83	0.69	0.95	4.0	0.005	0.89	1.0	0.03	28.46	0.00	2.051	10.55	2.20	3.2	96.8	0.0	2.23	2.22	0.92	0.88	0.98	12821	762	10	330	0	0	0	logfile
✔	7Y04	33537	2024-02-15	2022-06-03	3.5	4.03	—	4.0	0.004	0.76	0.0	0.04	15.69	0.00	2.217	6.36	0.75	4.7	95.3	0.0	-2.60	0.57	0.66	2.70	4.0	0.004	0.63	0.0	0.04	16.52	0.00	1.121	7.32	2.24	5.0	95.0	0.0	-1.79	0.38	0.69	0.78	2.18	12050	1475	7	0	4	0	0	logfile
✔	7Y00	33536	2024-02-15	2022-06-03	3.96	4.73	3.89	3.9	0.004	0.69	0.0	0.04	27.46	0.00	1.717	12.80	0.31	1.5	98.5	0.0	0.85	0.90	0.80	0.94	3.9	0.005	0.67	0.0	0.03	28.74	0.00	2.108	13.66	1.89	2.0	98.0	0.0	2.46	2.01	0.93	0.87	1.07	12411	762	10	310	0	0	0	logfile
✔	7Y09	33538	2024-02-18	2022-06-03	3.71	4.08	3.85	4.0	0.003	0.67	0.0	0.05	14.30	0.01	2.213	8.81	0.13	3.9	96.1	0.0	-0.40	0.77	0.76	1.47	4.0	0.004	0.91	1.0	0.05	15.90	0.00	1.613	16.55	2.12	4.5	95.5	0.0	-0.11	2.24	0.79	0.80	1.29	20817	2636	23	0	12	0	0	logfile
✔	7XZX	33533	2024-02-17	2022-06-03	4.53	5.42	4.49	4.5	0.006	0.99	0.0	0.06	25.64	0.00	1.688	10.77	0.15	1.7	98.3	0.0	0.69	0.69	0.37	—	4.4	0.004	0.62	0.0	0.04	25.36	0.00	2.110	12.92	0.00	1.4	98.6	0.0	1.14	1.70	0.90	0.82	—	19270	1554	14	342	0	0	0	logfile
✔	7XZZ	33535	2024-02-17	2022-06-03	4.07	5.32	3.99	4.6	0.006	0.92	0.0	0.06	25.15	0.00	1.717	11.14	0.15	1.7	98.3	0.0	0.69	0.70	0.43	—	4.6	0.003	0.65	0.0	0.04	25.36	0.00	2.014	12.74	0.00	1.6	98.4	0.0	1.39	0.87	0.87	0.81	—	18623	1554	14	310	0	0	0	logfile
✔	8A1T	15088	2024-02-21	2022-06-02	3.37	2.93	3.53	3.1	0.004	0.52	0.0	0.04	17.34	0.00	2.002	4.51	0.00	2.2	97.8	0.0	1.51	0.58	0.77	2.16	3.1	0.005	0.56	0.0	0.04	16.68	0.00	0.920	9.42	2.14	3.5	96.5	0.0	0.32	0.47	0.58	0.78	1.96	29507	1889	11	0	14	0	14626	logfile
✔	7XZ5	33525	2024-02-16	2022-06-02	3.1	2.85	3.00	3.0	0.020	1.55	81.0	0.21	14.34	0.00	2.103	2.18	0.00	1.7	98.3	0.0	1.35	0.60	0.75	2.79	3.0	0.002	0.51	0.0	0.04	15.69	0.00	2.057	4.00	0.90	2.4	97.6	0.0	1.06	0.64	0.62	0.80	2.94	16456	1052	5	0	1	0	8189	logfile
✔	8A1U	15089	2024-02-21	2022-06-02	2.86	2.69	2.74	2.8	0.004	0.56	0.0	0.04	17.89	0.00	2.034	3.69	0.71	1.7	98.3	0.0	1.90	0.57	0.72	2.63	2.8	0.003	0.53	0.0	0.04	16.87	0.00	1.969	6.47	2.32	2.5	97.5	0.0	0.77	1.36	0.61	0.82	2.89	29956	1898	17	0	17	187	14698	logfile
✔	8A1Y	15093	2024-02-21	2022-06-02	3.3	3.70	3.51	3.7	0.004	0.54	0.0	0.04	17.51	0.00	2.049	3.87	0.06	2.0	98.0	0.0	1.28	0.59	0.75	1.56	3.7	0.003	0.51	0.0	0.04	16.35	0.00	0.771	8.09	1.59	3.0	97.0	0.0	0.44	1.44	0.63	0.80	1.43	30045	1920	11	0	14	0	14864	logfile

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