Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8A1X	15092	2024-02-21	2022-06-02	3.2	3.01	3.27	3.3	0.004	0.59	0.0	0.04	17.10	0.00	1.889	5.80	0.06	2.0	98.0	0.0	1.53	0.56	0.70	2.31	3.3	0.005	0.56	0.0	0.04	16.43	0.00	0.757	8.91	2.01	3.9	96.1	0.0	0.45	0.41	0.61	0.81	2.34	29510	1893	11	0	11	0	14655	logfile
✔	7XZ5	33525	2024-02-16	2022-06-02	3.1	2.85	3.00	3.0	0.020	1.55	81.0	0.21	14.34	0.00	2.103	2.18	0.00	1.7	98.3	0.0	1.35	0.60	0.75	2.79	3.0	0.002	0.51	0.0	0.04	15.69	0.00	2.057	4.00	0.90	2.4	97.6	0.0	1.06	0.64	0.62	0.80	2.94	16456	1052	5	0	1	0	8189	logfile
✔	8A1S	15086	2024-02-16	2022-06-02	4.0	3.83	3.95	37.0	0.008	0.74	0.0	0.05	14.73	0.00	1.988	10.18	0.97	3.9	96.0	0.2	-0.24	0.26	0.00	—	3.8	0.005	0.94	1.0	0.05	13.34	0.01	2.007	21.22	1.97	6.6	93.2	0.2	-1.51	1.68	0.34	0.23	—	67152	8528	32	0	32	0	0	logfile
✔	8A1Y	15093	2024-02-21	2022-06-02	3.3	3.70	3.51	3.7	0.004	0.54	0.0	0.04	17.51	0.00	2.049	3.87	0.06	2.0	98.0	0.0	1.28	0.59	0.75	1.56	3.7	0.003	0.51	0.0	0.04	16.35	0.00	0.771	8.09	1.59	3.0	97.0	0.0	0.44	1.44	0.63	0.80	1.43	30045	1920	11	0	14	0	14864	logfile
✔	7XZH	33527	2024-02-23	2022-06-02	2.78	3.49	3.05	3.2	0.008	0.98	3.0	0.06	15.73	0.00	2.064	10.40	1.23	4.5	95.4	0.2	-1.32	0.71	0.73	1.74	3.2	0.006	0.72	0.0	0.04	15.34	0.00	2.083	12.96	1.40	4.2	95.8	0.0	-0.24	1.68	0.75	0.84	1.84	37073	4379	12	0	24	0	0	logfile
✘	8D4T	27196	2024-02-20	2022-06-02	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27974	1738	17	0	12	0	13710	logfile
✔	8A1W	15091	2024-02-21	2022-06-02	2.56	2.20	2.53	2.4	0.004	0.56	0.0	0.04	16.54	0.00	2.014	2.96	0.32	1.1	98.9	0.0	1.65	0.60	0.72	3.88	2.4	0.003	0.54	0.0	0.04	16.99	0.00	0.822	7.80	1.41	2.3	97.7	0.0	0.47	1.45	0.63	0.82	3.48	30172	1908	16	0	16	289	14776	logfile
✔	8A1V	15090	2024-02-21	2022-06-02	2.73	2.26	2.68	2.5	0.003	0.54	0.0	0.04	15.90	0.00	1.991	3.08	0.78	1.7	98.3	0.0	1.02	0.61	0.75	3.70	2.2	0.004	0.57	0.0	0.04	16.42	0.00	1.891	7.60	1.62	2.8	97.2	0.0	0.05	0.73	0.61	0.81	3.52	29906	1892	16	0	14	386	14644	logfile
✔	8D3R	27163	2024-02-16	2022-06-01	3.04	2.33	3.07	2.9	0.004	0.61	0.0	0.04	18.93	0.00	1.941	7.12	0.20	4.8	95.2	0.0	-0.07	0.67	0.74	1.35	2.2	0.003	0.67	0.0	0.04	19.52	0.00	2.060	10.77	4.76	4.0	96.0	0.0	-0.43	1.33	0.68	0.75	1.70	15113	1768	6	45	2	0	0	logfile
✔	7XYF	33520	2024-02-17	2022-06-01	4.3	4.47	3.32	4.3	0.008	0.93	0.0	0.05	27.11	0.01	2.217	13.45	2.14	4.9	95.1	0.0	-4.98	0.87	0.81	—	4.3	0.004	0.68	0.0	0.04	25.84	0.00	2.036	20.41	0.00	5.4	94.6	0.0	-0.17	0.79	0.87	0.81	—	17321	1418	11	292	0	0	0	logfile
✔	7XY9	33514	2024-02-15	2022-06-01	2.12	2.29	2.22	2.3	0.002	0.54	0.0	0.05	17.43	0.00	1.988	4.59	1.67	4.0	96.0	0.0	0.43	0.78	0.88	5.01	2.3	0.002	0.57	0.0	0.05	17.26	0.00	1.946	5.12	1.39	4.4	95.6	0.0	0.19	0.85	0.75	0.87	5.26	10962	1376	12	0	12	574	0	logfile
✔	7XYM	33522	2024-02-16	2022-06-01	3.3	3.70	3.42	3.6	0.009	1.58	6.0	0.07	14.87	0.01	1.028	29.59	0.49	25.5	71.6	2.9	-6.19	0.71	0.74	1.93	3.6	0.005	1.10	0.0	0.06	16.58	0.01	2.073	25.91	2.02	27.6	70.7	1.7	-4.84	1.40	0.69	0.79	1.86	11436	1464	3	0	0	0	0	logfile
✔	8D48	27177	2024-02-13	2022-06-01	3.7	3.91	3.59	3.9	0.005	0.81	1.0	0.05	16.28	0.01	1.565	11.86	0.00	7.2	92.8	0.0	-1.11	0.72	0.79	2.07	3.9	0.004	0.72	0.0	0.05	15.90	0.00	2.239	9.55	3.37	5.9	94.1	0.0	-0.86	0.51	0.73	0.81	2.17	5545	714	4	0	2	0	0	logfile
✔	8D3L	27159	2024-02-17	2022-06-01	3.49	3.77	3.49	3.8	0.003	0.62	1.0	0.04	17.74	0.00	1.752	9.01	0.23	6.0	93.8	0.3	-0.39	0.74	0.76	1.52	3.8	0.004	0.65	0.0	0.04	19.45	0.00	2.045	8.63	2.34	8.2	91.6	0.2	-0.52	1.04	0.69	0.78	1.73	17485	2001	15	65	4	4	0	logfile
✔	8D3U	27164	2024-02-17	2022-06-01	3.7	3.38	3.74	3.6	0.005	1.15	1.0	0.05	17.66	0.00	1.392	12.21	0.63	5.2	94.7	0.1	0.50	0.64	0.81	1.41	3.6	0.002	0.61	0.0	0.04	17.75	0.00	2.180	10.87	3.07	4.7	95.2	0.1	0.45	0.42	0.64	0.82	1.25	10121	1287	4	0	2	0	0	logfile
✔	8D45	27175	2024-02-18	2022-06-01	2.62	2.70	2.64	2.9	0.004	0.79	0.0	0.04	17.51	0.01	2.203	4.67	0.92	5.2	94.8	0.0	-1.43	0.62	0.71	3.11	2.9	0.004	0.62	0.0	0.04	17.64	0.01	2.163	7.96	1.74	4.8	95.2	0.0	-0.15	0.40	0.62	0.73	2.97	20932	1358	4	0	0	0	10370	logfile
✔	8D46	27176	2024-02-21	2022-06-01	2.84	3.04	2.86	3.1	0.004	0.77	0.0	0.05	17.11	0.01	2.196	4.90	2.97	3.4	96.6	0.0	-0.83	0.60	0.73	2.51	3.1	0.004	0.56	0.0	0.04	17.46	0.00	1.918	8.08	2.97	4.4	95.6	0.1	-0.31	0.37	0.60	0.74	2.58	30206	1956	4	0	0	0	15096	logfile
✔	8D3X	27167	2024-02-17	2022-06-01	4.1	3.74	4.08	3.8	0.003	0.69	2.0	0.06	14.47	0.00	1.492	14.67	0.27	4.4	95.3	0.3	-0.48	0.57	0.78	—	3.8	0.003	0.59	0.0	0.04	14.51	0.00	2.167	12.42	0.00	5.1	94.9	0.0	-0.54	1.23	0.57	0.80	—	10219	1305	3	0	1	0	0	logfile
✔	8A1D	15072	2024-02-16	2022-06-01	3.0	3.06	2.96	3.1	0.008	0.74	0.0	0.05	14.73	0.00	1.988	10.18	0.97	3.9	96.0	0.2	-0.24	0.61	0.69	3.77	3.0	0.004	0.61	0.0	0.04	12.89	0.00	2.001	8.50	2.48	3.3	96.5	0.2	-0.55	0.53	0.77	0.82	3.54	67152	8528	32	0	32	0	0	logfile
✔	8D42	27172	2024-02-21	2022-06-01	2.91	2.33	—	2.8	0.004	0.56	0.0	0.04	14.52	0.00	1.923	4.86	0.84	3.7	96.3	0.0	0.49	0.68	0.75	2.53	2.8	0.003	0.60	0.0	0.04	17.68	0.00	2.029	7.61	2.07	4.1	95.9	0.0	-0.21	0.49	0.69	0.76	2.02	29803	1784	6	42	4	0	14610	logfile

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