Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8A1E	15073	2024-02-19	2022-06-01	2.83	3.02	2.82	3.1	0.003	0.54	0.0	0.04	12.78	0.00	1.655	10.48	0.00	5.3	94.7	0.0	-0.52	0.67	0.80	3.95	3.1	0.003	0.59	0.0	0.04	15.30	0.00	2.195	8.78	1.63	5.7	94.3	0.0	-0.58	0.32	0.64	0.80	3.33	18402	2370	15	0	0	0	0	logfile
✔	8D3U	27164	2024-02-17	2022-06-01	3.7	3.38	3.74	3.6	0.005	1.15	1.0	0.05	17.66	0.00	1.392	12.21	0.63	5.2	94.7	0.1	0.50	0.64	0.81	1.41	3.6	0.002	0.61	0.0	0.04	17.75	0.00	2.180	10.87	3.07	4.7	95.2	0.1	0.45	0.42	0.64	0.82	1.25	10121	1287	4	0	2	0	0	logfile
✔	7XYM	33522	2024-02-16	2022-06-01	3.3	3.70	3.42	3.6	0.009	1.58	6.0	0.07	14.87	0.01	1.028	29.59	0.49	25.5	71.6	2.9	-6.19	0.71	0.74	1.93	3.6	0.005	1.10	0.0	0.06	16.58	0.01	2.073	25.91	2.02	27.6	70.7	1.7	-4.84	1.40	0.69	0.79	1.86	11436	1464	3	0	0	0	0	logfile
✔	7XY9	33514	2024-02-15	2022-06-01	2.12	2.29	2.22	2.3	0.002	0.54	0.0	0.05	17.43	0.00	1.988	4.59	1.67	4.0	96.0	0.0	0.43	0.78	0.88	5.01	2.3	0.002	0.57	0.0	0.05	17.26	0.00	1.946	5.12	1.39	4.4	95.6	0.0	0.19	0.85	0.75	0.87	5.26	10962	1376	12	0	12	574	0	logfile
✔	8D42	27172	2024-02-21	2022-06-01	2.91	2.33	—	2.8	0.004	0.56	0.0	0.04	14.52	0.00	1.923	4.86	0.84	3.7	96.3	0.0	0.49	0.68	0.75	2.53	2.8	0.003	0.60	0.0	0.04	17.68	0.00	2.029	7.61	2.07	4.1	95.9	0.0	-0.21	0.49	0.69	0.76	2.02	29803	1784	6	42	4	0	14610	logfile
✔	8D48	27177	2024-02-13	2022-06-01	3.7	3.91	3.59	3.9	0.005	0.81	1.0	0.05	16.28	0.01	1.565	11.86	0.00	7.2	92.8	0.0	-1.11	0.72	0.79	2.07	3.9	0.004	0.72	0.0	0.05	15.90	0.00	2.239	9.55	3.37	5.9	94.1	0.0	-0.86	0.51	0.73	0.81	2.17	5545	714	4	0	2	0	0	logfile
✔	8A1R	15084	2024-02-14	2022-06-01	3.6	5.63	3.62	3.4	0.011	0.86	0.0	0.06	16.56	0.00	2.097	11.72	0.00	5.2	94.8	0.0	-0.06	0.91	0.75	-0.28	3.5	0.003	0.69	0.0	0.05	16.41	0.00	2.166	19.75	1.12	6.4	93.6	0.0	-0.56	0.61	0.95	0.86	-0.05	9286	1186	4	0	4	0	0	logfile
✔	8A1D	15072	2024-02-16	2022-06-01	3.0	3.06	2.96	3.1	0.008	0.74	0.0	0.05	14.73	0.00	1.988	10.18	0.97	3.9	96.0	0.2	-0.24	0.61	0.69	3.77	3.0	0.004	0.61	0.0	0.04	12.89	0.00	2.001	8.50	2.48	3.3	96.5	0.2	-0.55	0.53	0.77	0.82	3.54	67152	8528	32	0	32	0	0	logfile
✔	8D3V	27165	2024-02-17	2022-06-01	3.4	2.99	3.31	3.3	0.003	0.49	0.0	0.04	14.47	0.00	2.143	6.74	0.00	4.6	95.4	0.0	-1.13	0.58	0.79	2.56	3.3	0.003	0.52	0.0	0.04	15.34	0.00	2.167	6.94	1.10	3.9	96.1	0.0	0.43	0.34	0.58	0.78	2.19	10011	1279	3	0	0	0	0	logfile
✔	8D4A	27179	2024-02-15	2022-06-01	2.74	3.31	2.79	3.1	0.006	0.71	0.0	0.04	17.65	0.00	2.098	3.27	0.09	2.2	97.8	0.0	-0.49	0.87	0.87	4.89	3.1	0.003	0.53	0.0	0.04	18.42	0.00	1.999	5.84	0.82	2.1	97.9	0.0	1.56	2.18	0.84	0.89	4.11	11798	1207	6	91	3	1	0	logfile
✔	8D3W	27166	2024-02-14	2022-06-01	3.5	3.33	3.42	3.5	0.014	0.84	0.0	0.04	17.17	0.01	2.186	10.16	0.09	5.9	94.1	0.0	-0.26	0.62	0.82	1.71	3.4	0.003	0.57	0.0	0.04	17.35	0.00	2.179	8.22	2.74	5.3	94.7	0.0	0.03	0.36	0.62	0.82	1.71	10046	1280	4	0	1	0	0	logfile
✔	8D46	27176	2024-02-21	2022-06-01	2.84	3.04	2.86	3.1	0.004	0.77	0.0	0.05	17.11	0.01	2.196	4.90	2.97	3.4	96.6	0.0	-0.83	0.60	0.73	2.51	3.1	0.004	0.56	0.0	0.04	17.46	0.00	1.918	8.08	2.97	4.4	95.6	0.1	-0.31	0.37	0.60	0.74	2.58	30206	1956	4	0	0	0	15096	logfile
✔	8D4B	27180	2024-02-15	2022-06-01	2.92	3.58	2.96	3.3	0.005	0.70	0.0	0.04	16.40	0.00	1.942	5.37	0.00	2.2	97.8	0.0	-1.63	0.86	0.83	4.41	3.3	0.003	0.51	0.0	0.04	17.18	0.00	2.157	9.57	0.57	2.5	97.5	0.0	0.96	0.52	0.84	0.87	3.43	11010	1166	3	69	0	0	0	logfile
✔	8D33	27154	2024-02-16	2022-05-31	2.46	2.01	2.48	1.7	0.003	0.55	0.0	0.04	13.19	0.00	2.091	4.01	0.39	3.5	96.5	0.1	0.90	0.73	0.78	3.10	1.6	0.003	0.61	0.0	0.04	18.11	0.00	2.153	7.45	2.91	3.1	96.9	0.1	0.65	1.32	0.73	0.79	2.91	15272	1784	6	46	2	0	0	logfile
✔	7XY3	33509	2024-02-20	2022-05-31	4.6	4.69	4.58	4.5	0.005	0.75	0.0	0.06	9.58	0.01	2.198	6.54	0.07	7.9	92.1	0.0	-3.84	0.82	0.79	—	4.5	0.003	0.62	0.0	0.05	11.21	0.00	2.090	13.37	0.00	6.4	93.6	0.0	-1.92	2.21	0.83	0.81	—	26363	3302	7	0	38	0	0	logfile
✘	7XY4	33510	2024-02-20	2022-05-31	3.3	3.40	3.32	3.3	0.007	0.87	0.0	0.06	9.93	0.01	2.227	5.53	0.07	7.1	92.9	0.0	-3.83	0.74	0.80	2.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27297	3422	8	0	40	0	0	logfile
✔	7XY1	33507	2024-02-15	2022-05-31	3.3	3.36	—	3.3	0.005	0.76	6.0	0.06	13.22	0.01	2.035	16.43	0.97	8.4	91.0	0.6	-2.22	0.76	0.83	3.69	3.3	0.004	0.84	1.0	0.05	14.87	0.01	2.067	10.62	1.94	9.2	90.6	0.2	-2.22	0.32	0.77	0.85	2.94	11550	1536	3	0	0	0	0	logfile
✔	8D37	27155	2024-02-16	2022-05-31	2.65	2.08	2.72	1.8	0.003	0.52	0.0	0.04	12.72	0.00	1.962	4.63	0.32	3.7	96.3	0.0	0.95	0.66	0.73	1.85	1.7	0.004	0.89	1.0	0.04	18.48	0.01	2.049	14.73	4.52	4.6	95.4	0.0	0.09	1.12	0.68	0.75	1.87	15314	1784	6	48	2	0	0	logfile
✔	7XY7	33513	2024-02-13	2022-05-31	3.26	2.43	3.29	2.2	0.003	0.58	0.0	0.04	15.86	0.00	2.141	5.62	0.40	2.0	98.0	0.0	1.03	0.77	0.78	2.13	2.2	0.004	0.51	0.0	0.04	16.54	0.00	2.165	5.83	4.50	1.9	98.1	0.0	1.21	1.01	0.77	0.79	1.89	7047	895	4	0	1	0	0	logfile
✔	7XXF	33501	2024-02-21	2022-05-30	2.24	2.16	2.23	2.2	0.019	1.77	0.0	0.05	21.33	0.02	2.014	7.34	1.31	2.8	97.2	0.0	1.59	0.77	0.88	5.31	2.2	0.003	0.63	0.0	0.04	17.66	0.00	2.045	6.88	1.51	2.9	97.1	0.0	2.37	0.88	0.77	0.90	4.53	29826	3004	120	0	98	538	0	logfile

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