Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D2Q	27146	2024-02-14	2022-05-30	2.58	2.06	2.50	2.5	0.006	0.97	1.0	0.05	20.82	0.01	2.113	5.23	0.00	3.5	96.5	0.0	-1.68	0.60	0.79	4.32	2.5	0.004	0.61	0.0	0.04	21.18	0.00	2.002	10.03	1.35	3.0	97.0	0.0	0.49	0.37	0.61	0.82	4.18	9721	906	8	122	5	2	0	logfile
✔	8D2X	27153	2024-02-14	2022-05-30	3.4	3.58	3.42	3.5	0.012	1.29	0.0	0.06	30.61	0.01	2.260	6.47	0.34	6.7	93.2	0.1	-1.77	0.70	0.78	3.65	3.5	0.003	0.71	0.0	0.04	13.76	0.00	2.222	9.52	2.87	6.2	93.8	0.0	-0.51	0.60	0.72	0.80	3.15	6813	864	4	0	14	4	0	logfile
✔	8D2U	27150	2024-02-14	2022-05-30	3.3	3.47	3.31	3.4	0.012	1.35	0.0	0.05	27.14	0.01	2.344	6.69	0.99	6.5	93.5	0.0	-2.64	0.66	0.79	3.97	3.4	0.004	0.65	0.0	0.04	13.77	0.00	2.284	9.63	3.28	6.2	93.8	0.0	-0.39	0.54	0.71	0.82	3.74	6862	864	7	0	18	5	0	logfile
✔	7XXF	33501	2024-02-21	2022-05-30	2.24	2.16	2.23	2.2	0.019	1.77	0.0	0.05	21.33	0.02	2.014	7.34	1.31	2.8	97.2	0.0	1.59	0.77	0.88	5.31	2.2	0.003	0.63	0.0	0.04	17.66	0.00	2.045	6.88	1.51	2.9	97.1	0.0	2.37	0.88	0.77	0.90	4.53	29826	3004	120	0	98	538	0	logfile
✔	8D2o	27144	2024-02-14	2022-05-30	2.66	2.44	2.64	2.7	0.005	0.85	0.0	0.05	21.02	0.01	2.174	4.02	0.00	1.8	98.2	0.0	-1.19	0.66	0.83	4.04	2.7	0.003	0.56	0.0	0.04	21.33	0.00	2.107	9.96	2.31	1.5	98.5	0.0	1.01	0.31	0.67	0.85	3.76	8471	749	8	123	5	3	0	logfile
✔	8A11	15065	2024-02-16	2022-05-30	3.52	3.71	3.54	3.3	0.006	0.55	0.0	0.04	11.70	0.01	2.214	6.78	0.00	2.9	97.0	0.1	-2.20	0.88	0.75	1.35	3.3	0.002	0.54	0.0	0.04	13.56	0.00	2.156	8.19	1.50	2.9	97.1	0.0	0.74	0.48	0.89	0.79	1.81	14630	1875	5	6	0	0	0	logfile
✘	8D2S	27148	2024-02-14	2022-05-30	2.9	3.02	2.89	3.0	0.011	1.35	0.0	0.05	26.51	0.01	2.297	6.89	0.80	5.0	95.0	0.0	-1.07	0.70	0.81	4.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7071	879	5	0	21	27	0	logfile
✔	8D2W	27152	2024-02-14	2022-05-30	3.4	3.58	3.39	3.5	0.012	1.27	0.0	0.05	29.86	0.01	2.277	6.85	0.84	6.5	93.3	0.1	-1.42	0.66	0.78	3.81	3.5	0.003	0.65	0.0	0.04	13.30	0.00	2.211	9.87	1.17	5.7	94.2	0.1	-0.13	1.77	0.70	0.80	3.53	6858	864	6	0	16	5	0	logfile
✔	8D2T	27149	2024-02-14	2022-05-30	3.4	3.60	3.42	3.5	0.011	1.10	0.0	0.05	27.92	0.01	2.257	6.54	0.51	6.9	93.1	0.0	-0.99	0.70	0.79	4.07	3.5	0.003	0.69	0.0	0.04	13.24	0.00	2.174	10.23	2.74	5.4	94.5	0.1	-0.13	1.01	0.70	0.79	3.44	6609	864	6	0	10	4	0	logfile
✔	8D2K	27141	2024-02-15	2022-05-30	2.43	2.17	2.40	2.4	0.006	0.91	0.0	0.05	20.18	0.01	2.000	3.93	0.00	1.5	98.5	0.0	-0.18	0.66	0.84	4.54	2.4	0.005	0.64	0.0	0.04	20.95	0.01	1.856	9.97	1.53	2.6	97.4	0.0	0.91	0.27	0.67	0.86	4.41	12295	1105	13	154	11	300	0	logfile
✔	8D2P	27145	2024-02-15	2022-05-30	2.78	2.32	2.66	2.7	0.005	0.81	0.0	0.05	18.65	0.01	2.018	3.73	0.00	1.9	98.1	0.0	-1.23	0.63	0.82	4.10	2.7	0.006	0.65	0.0	0.04	19.86	0.01	1.799	9.47	2.19	2.8	97.2	0.0	0.00	0.33	0.64	0.84	3.85	11436	1105	8	125	11	36	0	logfile
✔	8D2L	27142	2024-02-15	2022-05-30	2.21	2.13	2.67	2.2	0.005	0.88	3.0	0.05	19.80	0.01	2.031	3.65	0.00	1.8	98.2	0.0	-0.15	0.69	0.86	5.22	2.2	0.006	0.68	0.0	0.04	20.60	0.01	1.805	8.06	1.31	1.8	98.2	0.0	1.00	0.27	0.69	0.88	5.37	12227	1105	13	149	11	341	0	logfile
✔	8D2N	27143	2024-02-15	2022-05-30	2.88	2.50	2.55	2.8	0.004	0.94	0.0	0.05	20.41	0.01	2.129	5.17	0.00	4.8	95.1	0.1	-1.94	0.60	0.72	2.56	2.8	0.005	0.66	0.0	0.04	20.87	0.01	1.928	11.92	1.97	5.3	94.7	0.0	-0.53	0.35	0.63	0.76	2.47	11414	1105	5	128	1	0	0	logfile
✔	7XXB	33500	2024-02-15	2022-05-29	2.93	2.97	2.96	3.1	0.004	0.68	0.0	0.09	12.24	0.00	1.977	9.21	0.00	3.1	96.9	0.0	0.68	0.55	0.76	2.33	3.1	0.003	0.56	0.0	0.08	14.45	0.00	2.038	7.72	0.78	2.3	97.7	0.0	1.46	0.39	0.56	0.78	2.04	12038	754	4	0	2	0	6138	logfile
✔	7XX2	33498	2024-02-23	2022-05-28	3.6	3.49	3.64	3.3	0.006	0.95	4.0	0.06	14.51	0.01	2.033	16.70	1.27	9.9	90.0	0.0	-1.28	0.86	0.82	1.65	3.3	0.004	0.67	0.0	0.04	15.89	0.00	2.154	12.06	2.45	8.8	91.2	0.0	-0.50	0.48	0.86	0.82	1.15	36436	4528	11	0	5	0	0	logfile
✘	8D1B	27121	2024-02-13	2022-05-27	3.57	3.85	3.45	3.8	0.006	1.09	0.0	0.05	14.42	0.01	2.084	19.71	0.28	24.1	75.9	0.0	-6.32	0.76	0.81	2.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6724	874	4	0	0	0	0	logfile
✔	8D1M	27135	2024-02-16	2022-05-27	3.11	3.41	3.10	3.4	0.006	0.87	0.0	0.06	15.34	0.00	2.396	12.79	1.18	2.7	97.1	0.3	1.27	0.63	0.86	3.50	3.4	0.003	0.49	0.0	0.04	16.67	0.00	2.255	7.60	1.77	1.9	98.1	0.0	1.40	0.91	0.62	0.88	2.41	15590	1880	5	0	0	0	0	logfile
✘	8D1V	27138	2024-02-15	2022-05-27	2.82	2.27	2.69	2.7	0.006	0.74	0.0	0.04	17.31	0.00	2.059	25.76	0.00	5.2	94.8	0.0	-0.54	0.62	0.78	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10982	1229	4	52	4	0	9	logfile
✔	8A0E	15052	2024-02-15	2022-05-27	2.8	3.09	2.92	3.0	0.003	0.60	0.0	0.04	14.46	0.00	2.176	2.58	0.00	1.7	98.3	0.0	-0.22	0.76	0.89	4.52	3.0	0.002	0.48	0.0	0.04	15.36	0.00	2.194	3.04	0.63	1.5	98.5	0.0	-0.23	0.31	0.74	0.90	3.89	12082	1526	9	0	7	0	0	logfile
✔	8D1L	27134	2024-02-16	2022-05-27	2.12	2.70	2.13	2.6	0.005	0.94	0.0	0.04	17.69	0.00	2.222	4.07	1.18	1.6	98.4	0.0	1.75	0.72	0.89	4.78	2.6	0.003	0.52	0.0	0.04	16.72	0.00	2.264	4.83	0.88	1.5	98.5	0.0	1.75	0.39	0.63	0.87	4.50	16306	1880	10	0	46	0	0	logfile

• ← previous
• Page 196 of 633
• next →