Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CZi	27098	2024-02-13	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.19	0.00	2.148	5.65	1.35	0.0	100.0	0.0	5.64	0.85	0.82	0.84	1.98	2550	339	6	0	0	0	0	logfile
✔	8CZE	27096	2024-02-15	2022-05-24	2.58	3.35	2.72	3.2	0.004	0.55	0.0	0.03	25.81	0.00	2.285	3.74	0.32	1.9	98.1	0.0	2.43	0.86	0.86	3.06	3.2	0.004	0.58	0.0	0.03	26.58	0.00	2.252	4.11	1.42	3.2	96.8	0.0	2.44	0.26	0.86	0.86	2.87	12029	763	10	292	0	0	0	logfile
✔	7ZYG	15022	2024-02-14	2022-05-24	2.68	3.62	2.80	3.4	0.002	0.46	0.0	0.04	16.31	0.00	2.263	3.82	0.00	2.3	97.7	0.0	0.57	0.69	0.83	3.24	3.4	0.005	0.61	0.0	0.04	18.10	0.00	2.198	7.36	1.08	3.5	96.5	0.0	0.85	0.75	0.69	0.83	2.71	8914	1039	7	30	1	0	0	logfile
✔	8CYR	27082	2024-02-13	2022-05-24	4.2	3.54	3.92	4.0	0.003	0.62	0.0	0.05	8.97	0.00	2.654	0.08	2.00	4.4	95.6	0.0	-2.37	0.46	0.55	—	4.0	0.007	0.99	0.0	0.06	13.11	0.00	1.994	19.57	0.00	11.8	88.2	0.0	-3.97	2.77	0.54	0.70	—	5964	864	12	0	0	0	0	logfile
✘	8CYi	27078	2024-02-16	2022-05-23	3.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14621	932	3	0	2	0	7191	logfile
✔	8CY8	27070	2024-02-20	2022-05-23	2.94	3.19	3.01	3.2	0.011	0.79	0.0	0.06	12.77	0.01	2.171	3.51	0.00	0.6	99.4	0.0	1.60	0.74	0.87	4.77	3.2	0.005	0.60	0.0	0.05	15.69	0.00	2.170	4.97	1.16	2.8	97.2	0.0	1.24	0.91	0.74	0.89	3.99	28800	3744	23	0	12	0	0	logfile
✔	8CYB	27073	2024-02-13	2022-05-23	2.7	3.56	2.88	3.2	0.004	0.62	1.0	0.05	19.33	0.00	1.966	7.28	0.20	5.0	94.7	0.3	-0.12	0.80	0.77	1.69	3.2	0.003	0.54	1.0	0.05	13.79	0.00	1.898	8.62	0.54	5.3	94.4	0.3	-0.45	0.41	0.80	0.78	2.16	54126	3432	29	0	114	0	25897	logfile
✔	8CY9	27071	2024-02-20	2022-05-23	2.9	3.60	3.07	3.3	0.002	0.51	0.0	0.04	13.25	0.00	2.199	6.57	0.19	3.8	96.1	0.1	0.62	0.78	0.81	1.75	3.3	0.004	0.57	0.0	0.04	14.85	0.00	2.127	9.57	1.17	4.6	95.3	0.1	0.14	1.59	0.78	0.82	2.17	28469	3663	6	0	0	0	0	logfile
✔	8CYC	27074	2024-02-20	2022-05-23	2.9	3.44	2.92	3.2	0.002	0.53	0.0	0.04	13.71	0.00	2.186	8.20	0.16	5.4	94.3	0.3	-0.06	0.74	0.71	1.18	3.2	0.007	0.75	0.0	0.05	15.58	0.00	2.079	16.06	2.61	7.9	91.9	0.2	-0.98	0.51	0.76	0.77	1.83	28697	3677	6	0	0	0	0	logfile
✔	8CYD	27075	2024-02-20	2022-05-23	2.6	3.24	2.62	3.0	0.002	0.51	0.0	0.04	12.52	0.01	1.930	6.47	0.32	4.9	94.7	0.4	0.04	0.77	0.79	2.24	3.0	0.006	0.63	0.0	0.05	14.40	0.00	2.084	8.57	1.52	5.4	94.4	0.2	-0.11	1.16	0.80	0.84	2.49	28454	3663	6	0	0	0	0	logfile
✔	8CY6	27068	2024-02-13	2022-05-23	3.2	3.98	3.39	3.6	0.003	0.50	0.0	0.04	10.43	0.00	2.024	7.15	0.16	3.0	96.8	0.2	0.26	0.82	0.78	2.02	3.6	0.004	0.51	0.0	0.04	11.71	0.00	2.000	7.42	0.73	4.4	95.6	0.0	-0.08	0.38	0.84	0.81	2.04	56077	3666	6	0	0	0	27658	logfile
✔	7XVG	33486	2024-02-13	2022-05-23	3.6	3.89	—	3.8	0.004	0.73	0.0	0.05	14.26	0.00	2.074	12.92	0.28	5.9	94.0	0.1	-0.97	0.74	0.78	1.82	3.8	0.003	0.70	0.0	0.04	16.44	0.00	2.190	10.99	2.62	5.3	94.7	0.0	-0.60	0.53	0.75	0.78	1.16	6438	794	2	0	0	0	0	logfile
✔	8CYJ	27080	2024-02-14	2022-05-23	3.6	4.32	3.59	3.6	0.003	0.62	0.0	0.04	14.18	0.01	2.056	7.59	0.00	6.7	92.5	0.9	-0.91	0.79	0.57	1.23	3.8	0.004	0.68	0.0	0.04	16.23	0.01	1.992	21.45	3.80	10.0	89.3	0.7	-1.87	0.82	0.81	0.65	0.78	10575	701	5	0	0	0	5089	logfile
✘	8CY7	27069	2024-02-13	2022-05-23	2.9	3.84	3.06	3.3	0.003	0.76	10.0	0.17	13.02	0.00	2.018	5.28	0.26	3.7	96.1	0.1	0.96	0.83	0.76	2.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	54932	3513	21	0	74	0	26549	logfile
✔	8CYA	27072	2024-02-14	2022-05-23	2.7	3.50	2.73	3.0	0.003	0.56	0.0	0.05	16.62	0.00	1.935	6.76	0.06	4.8	95.0	0.2	0.52	0.83	0.75	1.85	3.1	0.006	0.73	1.0	0.04	12.66	0.00	1.999	9.99	0.75	5.2	94.6	0.2	0.07	0.41	0.85	0.79	2.10	57833	3681	29	0	88	0	27935	logfile
✔	7ZXY	15017	2024-02-16	2022-05-23	3.15	2.97	3.04	3.0	0.006	0.94	0.0	0.05	16.23	0.01	2.106	10.77	0.00	3.5	96.5	0.0	-0.44	0.74	0.81	3.20	3.0	0.003	0.67	0.0	0.04	15.59	0.00	2.090	8.99	0.64	3.3	96.7	0.0	0.47	0.31	0.74	0.85	2.74	15606	1913	25	0	23	0	0	logfile
✔	7ZXQ	15014	2024-02-14	2022-05-22	3.53	4.17	3.59	3.7	0.003	0.66	0.0	0.04	12.72	0.01	2.027	8.02	0.00	3.0	97.0	0.0	2.45	0.54	0.69	1.54	3.8	0.002	0.61	0.0	0.04	14.95	0.00	2.265	8.61	1.99	4.6	95.4	0.0	3.50	1.54	0.57	0.83	1.43	9930	1236	6	0	0	0	0	logfile
✔	8CXo	27062	2024-02-13	2022-05-22	3.7	4.10	3.65	4.1	0.003	0.58	0.0	0.04	10.10	0.00	2.329	2.39	0.00	2.7	96.9	0.4	1.90	0.60	0.77	1.79	4.1	0.003	0.70	0.0	0.04	15.76	0.00	2.195	13.78	4.74	4.6	95.4	0.0	1.13	1.90	0.62	0.80	0.92	4392	551	1	0	1	0	0	logfile
✔	8CXQ	27067	2024-02-13	2022-05-22	2.3	3.31	2.77	3.1	0.002	0.46	0.0	0.04	10.31	0.00	2.008	5.61	0.22	3.9	96.0	0.1	0.30	0.78	0.80	2.66	3.1	0.005	0.55	0.0	0.04	12.05	0.00	1.888	7.09	0.82	5.1	94.9	0.0	-0.20	0.38	0.73	0.76	2.60	56384	3666	6	0	0	0	27792	logfile
✔	8CXN	27061	2024-02-14	2022-05-22	2.9	3.69	2.99	3.3	0.002	0.50	3.0	0.05	11.48	0.00	1.974	5.44	0.06	3.5	96.4	0.1	0.27	0.78	0.71	1.63	3.4	0.004	0.54	3.0	0.04	12.54	0.00	1.848	10.10	0.41	6.3	93.7	0.1	-0.80	0.44	0.79	0.75	1.66	57131	3678	9	0	30	0	27987	logfile

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