Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XSX	33436	2024-02-19	2022-05-15	3.8	3.83	3.36	3.0	0.006	0.73	1.0	0.05	15.42	0.01	2.018	6.05	0.00	2.3	97.7	0.0	1.28	0.78	0.77	1.29	3.0	0.003	0.56	0.0	0.04	17.08	0.00	2.059	9.79	1.38	2.7	97.2	0.0	1.49	0.77	0.77	0.75	1.18	81134	9520	43	224	11	0	0	logfile
✔	7XSZ	33437	2024-02-19	2022-05-15	3.4	3.55	3.21	3.0	0.005	0.59	0.0	0.05	16.99	0.00	1.896	8.21	0.01	2.3	97.7	0.0	1.40	0.78	0.79	1.32	3.0	0.005	0.58	0.0	0.04	18.43	0.00	2.100	10.51	1.43	3.2	96.8	0.0	1.44	1.66	0.79	0.82	1.36	76548	8665	41	341	11	0	0	logfile
✔	7XST	33434	2024-02-23	2022-05-15	3.04	3.26	3.19	3.2	0.008	1.20	45.0	0.08	12.98	0.01	2.211	7.49	0.46	6.1	93.9	0.0	-1.69	0.58	0.61	2.57	3.2	0.003	0.60	0.0	0.04	14.45	0.00	2.164	6.73	1.55	3.6	96.4	0.0	-0.44	1.47	0.67	0.74	2.30	33532	4407	18	0	31	0	0	logfile
✘	7XSU	33435	2024-02-14	2022-05-15	3.4	3.68	3.45	3.7	0.011	1.61	9.0	0.11	19.27	0.01	1.440	12.45	5.06	5.5	94.1	0.4	1.66	0.55	0.75	2.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8969	1152	3	0	13	0	0	logfile
✘	8CTK	26993	2024-02-13	2022-05-15	3.52	3.87	3.55	3.9	0.003	0.69	0.0	0.05	14.37	0.00	2.347	4.69	0.00	3.8	96.2	0.0	-1.07	0.54	0.70	0.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3042	376	2	0	0	0	0	logfile
✔	7XSS	33433	2024-02-16	2022-05-15	3.2	2.32	3.17	2.1	0.003	0.61	0.0	0.04	19.02	0.01	2.143	8.25	0.59	5.7	94.2	0.1	-0.24	0.78	0.79	2.22	2.1	0.003	0.57	0.0	0.04	19.42	0.00	2.149	8.31	4.11	6.0	94.0	0.0	0.14	1.07	0.78	0.80	2.36	16847	1942	4	54	4	0	0	logfile
✘	7XSo	33429	2024-02-15	2022-05-15	3.01	2.21	2.88	2.1	0.009	1.02	4.0	0.07	18.96	0.01	2.157	4.29	3.99	6.0	94.0	0.1	-2.97	0.80	0.81	3.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10971	1271	3	35	4	0	0	logfile
✔	7XSR	33432	2024-02-17	2022-05-15	2.97	2.20	2.91	2.0	0.007	0.97	0.0	0.07	18.28	0.01	2.268	3.17	3.94	5.7	94.2	0.1	-2.57	0.80	0.79	2.87	1.9	0.004	0.81	0.0	0.04	19.30	0.00	2.056	7.33	3.54	5.4	94.6	0.1	0.10	0.56	0.80	0.83	2.79	16907	1963	5	49	4	0	0	logfile
✔	8CTG	26989	2024-02-13	2022-05-14	3.8	3.16	3.72	3.3	0.004	0.98	0.0	0.05	7.62	0.01	2.113	12.33	6.90	9.7	88.5	1.8	-3.04	0.57	0.35	-0.17	2.3	0.004	0.92	0.0	0.04	7.32	0.01	2.256	7.71	1.15	15.6	84.1	0.3	-3.25	2.05	0.60	0.45	1.36	5100	1006	4	0	1	0	0	logfile
✔	8CTE	26988	2024-02-23	2022-05-14	2.9	1.86	2.80	1.5	0.003	0.53	1.0	0.04	11.90	0.00	2.214	5.55	2.34	1.6	98.3	0.1	2.02	0.78	0.75	3.53	1.4	0.004	0.57	0.0	0.04	14.62	0.00	2.070	7.41	1.85	2.0	98.0	0.1	1.82	0.56	0.82	0.81	3.86	38844	4984	21	0	16	0	0	logfile
✔	8CTH	26990	2024-02-13	2022-05-14	3.3	3.53	3.29	3.5	0.014	1.05	0.0	0.04	20.24	0.07	2.257	12.01	0.00	3.3	96.7	0.0	-1.68	0.64	0.67	1.91	3.5	0.003	1.29	0.0	0.04	21.11	0.01	2.128	14.18	2.84	5.2	94.8	0.0	-1.06	1.23	0.66	0.68	2.21	5544	495	4	74	0	0	0	logfile
✔	7XSM	33427	2024-02-15	2022-05-14	4.01	4.70	4.03	4.0	0.002	0.47	0.0	0.03	24.50	0.00	1.969	7.06	0.00	0.0	0.0	0.0	—	0.90	0.75	—	4.0	0.007	0.78	0.0	0.04	26.67	0.01	1.798	49.89	0.00	0.0	0.0	0.0	—	1.72	0.92	0.82	—	12464	0	1	388	0	0	4165	logfile
✔	7XSK	33425	2024-02-15	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	24.66	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.007	0.69	0.0	0.04	25.95	0.01	1.746	31.76	0.00	0.0	0.0	0.0	—	1.93	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7XSN	33428	2024-02-14	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	25.09	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.006	0.63	0.0	0.03	24.73	0.00	2.107	21.06	0.00	0.0	0.0	0.0	—	0.26	0.92	0.88	—	8279	0	1	387	0	0	0	logfile
✔	8CTD	26986	2024-02-13	2022-05-14	3.42	3.05	3.37	3.4	0.003	0.63	0.0	0.04	15.42	0.00	2.248	9.77	0.00	2.2	97.8	0.0	0.84	0.45	0.78	1.12	3.3	0.003	0.58	0.0	0.04	16.35	0.00	2.201	7.13	4.39	0.7	99.3	0.0	1.58	1.15	0.45	0.79	1.59	3130	411	1	0	4	0	0	logfile
✔	8CTi	26991	2024-02-13	2022-05-14	3.6	3.83	3.60	3.7	0.011	0.79	0.0	0.04	20.28	0.00	2.164	11.82	0.49	3.1	96.9	0.0	-1.49	0.67	0.63	1.75	3.8	0.003	0.63	0.0	0.04	19.98	0.00	2.187	16.31	4.14	4.6	95.4	0.0	-0.84	2.64	0.70	0.65	1.26	5297	473	3	71	0	0	0	logfile
✔	7XSL	33426	2024-02-15	2022-05-14	3.84	4.65	3.83	3.7	0.002	0.47	0.0	0.02	24.69	0.00	1.935	8.02	0.00	0.0	0.0	0.0	—	0.91	0.77	—	3.8	0.007	0.71	0.0	0.04	25.81	0.01	1.808	34.41	0.00	0.0	0.0	0.0	—	1.01	0.92	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	8CSZ	26976	2024-02-14	2022-05-13	3.2	3.55	3.13	3.3	0.005	0.67	0.0	0.04	23.81	0.00	1.962	11.72	0.00	4.9	95.1	0.0	-0.97	0.84	0.86	4.03	3.3	0.005	0.61	0.0	0.04	23.50	0.00	1.910	10.24	2.12	5.3	94.7	0.0	-0.41	1.11	0.84	0.88	3.45	8948	494	5	236	3	0	0	logfile
✔	7XSE	33424	2024-02-18	2022-05-13	3.6	3.90	3.46	3.1	0.005	0.56	0.0	0.04	16.54	0.00	2.019	6.64	0.00	2.3	97.7	0.0	1.42	0.77	0.72	1.58	3.1	0.004	0.62	0.0	0.04	18.20	0.00	1.998	12.04	0.92	3.2	96.8	0.0	0.64	1.68	0.78	0.77	1.45	75229	8667	41	276	11	0	0	logfile
✔	8CSS	26969	2024-02-16	2022-05-13	2.36	2.40	2.38	2.4	0.004	0.64	0.0	0.39	18.56	0.01	1.953	2.42	0.02	1.4	98.6	0.0	1.44	0.72	0.79	3.45	2.4	0.005	0.82	0.0	0.12	19.62	0.00	1.897	6.23	1.60	1.8	98.2	0.0	1.39	0.47	0.73	0.82	3.36	67466	6062	44	847	46	104	0	logfile

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