Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UZU	26918	2024-02-13	2022-05-09	2.3	2.23	2.31	2.2	0.003	0.57	0.0	0.04	17.47	0.01	2.124	3.14	0.52	3.1	96.9	0.0	1.73	0.60	0.87	5.53	2.2	0.002	0.49	0.0	0.04	17.61	0.00	2.110	3.83	0.78	3.5	96.5	0.0	2.64	0.16	0.59	0.87	5.46	7399	483	4	0	0	79	3655	logfile
✔	7V00	26924	2024-02-18	2022-05-09	3.87	4.80	3.89	3.9	0.006	0.86	0.0	0.05	14.51	0.00	1.987	15.28	0.32	4.7	95.3	0.0	-1.00	0.85	0.72	1.70	4.0	0.003	0.69	0.0	0.04	16.58	0.00	2.151	14.61	1.48	3.2	96.8	0.0	-0.44	1.11	0.90	0.82	1.30	20420	2430	12	30	2	0	0	logfile
✔	7UZJ	26913	2024-02-25	2022-05-09	3.3	3.46	—	3.4	0.012	1.74	11.0	0.09	13.57	0.01	2.417	0.09	0.68	3.1	96.7	0.2	-0.72	0.75	0.82	3.02	3.4	0.008	0.74	0.0	0.05	16.26	0.01	2.038	7.89	1.71	4.1	95.9	0.0	0.49	2.50	0.76	0.83	2.22	49624	6232	21	0	2	0	0	logfile
✘	7UZE	26886	2024-02-16	2022-05-09	2.4	2.27	2.42	2.3	0.003	0.58	0.0	0.04	14.97	0.00	2.040	3.56	0.68	3.0	96.6	0.4	1.69	0.66	0.88	6.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14969	988	12	0	4	113	7392	logfile
✔	7ZTD	14958	2024-02-19	2022-05-09	4.6	4.11	4.55	4.3	0.007	1.04	0.0	0.06	15.69	0.01	2.097	8.15	0.00	5.4	94.6	0.0	-2.32	0.70	0.80	—	4.4	0.003	0.67	0.0	0.04	14.47	0.00	2.153	7.23	0.00	4.3	95.7	0.0	0.39	10.46	0.68	0.78	—	25740	2928	20	0	548	0	0	logfile
✔	7UZK	26914	2024-02-24	2022-05-09	3.0	3.14	—	3.1	0.012	1.74	8.0	0.09	12.77	0.01	2.272	0.21	0.30	2.6	97.2	0.2	-0.44	0.71	0.81	3.51	3.1	0.006	0.69	0.0	0.05	16.39	0.00	2.102	6.37	2.20	3.2	96.8	0.0	0.86	1.68	0.73	0.83	2.88	45246	5702	20	0	2	0	0	logfile
✔	7ZT6	14955	2024-02-13	2022-05-09	3.5	4.70	3.59	3.9	0.006	0.71	0.0	0.05	13.21	0.00	2.203	14.00	0.70	3.9	96.1	0.0	0.29	0.93	0.88	2.12	3.9	0.005	0.65	0.0	0.04	14.17	0.00	2.200	12.82	0.70	3.3	96.7	0.0	0.81	0.73	0.93	0.88	1.92	8073	1031	3	0	1	0	0	logfile
✔	7V05	26936	2024-02-21	2022-05-09	3.4	4.01	3.54	3.9	0.008	0.61	0.0	0.05	10.50	0.00	2.188	2.74	0.07	2.5	97.5	0.0	0.17	0.76	0.69	2.09	3.9	0.005	0.70	0.0	0.04	14.49	0.00	2.057	13.21	1.70	4.1	95.9	0.0	0.55	1.96	0.84	0.85	1.96	47382	6215	29	0	0	0	0	logfile
✔	7UZY	26922	2024-02-16	2022-05-09	4.05	5.04	4.10	3.8	0.005	0.76	0.0	0.05	13.95	0.01	1.373	14.50	0.38	4.7	95.2	0.1	-0.62	0.77	0.63	—	3.8	0.003	0.66	0.0	0.04	15.25	0.00	2.050	17.83	0.06	3.1	96.8	0.1	-0.09	1.25	0.83	0.74	—	15332	1781	11	44	0	0	0	logfile
✘	7ZTA	14956	2024-02-27	2022-05-09	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✔	7UZH	26911	2024-02-18	2022-05-09	3.8	3.93	—	3.8	0.012	1.65	1.0	0.08	12.25	0.01	2.489	0.19	0.10	3.3	96.5	0.2	-0.71	0.75	0.79	1.53	3.8	0.004	0.85	0.0	0.05	16.36	0.00	2.028	18.52	2.94	3.1	96.9	0.0	-0.19	1.06	0.77	0.81	1.18	71955	9174	36	0	1	0	0	logfile
✔	7UZG	26910	2024-02-17	2022-05-09	3.7	3.82	—	3.7	0.012	1.67	2.0	0.08	12.35	0.01	2.499	0.23	0.11	3.6	96.3	0.1	-0.70	0.72	0.78	1.91	3.7	0.003	0.78	0.0	0.04	16.27	0.00	2.092	15.08	2.77	2.7	97.3	0.0	0.13	1.66	0.72	0.79	1.34	69795	8913	36	0	1	0	0	logfile
✔	7UZZ	26923	2024-02-17	2022-05-09	4.45	6.04	4.45	4.4	0.008	0.98	0.0	0.06	13.20	0.00	1.424	17.03	0.75	5.0	95.0	0.0	-0.66	0.84	0.70	—	4.4	0.002	0.58	0.0	0.04	13.49	0.00	2.095	13.63	0.05	3.4	96.6	0.0	0.58	2.36	0.91	0.83	—	19967	2380	11	30	0	0	0	logfile
✔	7UZi	26912	2024-02-17	2022-05-09	3.9	4.08	—	4.0	0.012	1.65	3.0	0.08	12.35	0.02	2.492	0.18	0.18	3.8	96.1	0.1	-0.65	0.70	0.77	1.27	4.0	0.004	0.90	0.0	0.05	16.48	0.01	2.065	22.68	3.21	3.6	96.4	0.0	-0.37	2.87	0.72	0.79	0.92	71172	9083	37	0	1	0	0	logfile
✔	7UZF	26909	2024-02-18	2022-05-09	3.8	3.94	—	3.8	0.012	1.68	4.0	0.08	12.40	0.01	2.519	0.32	0.49	2.8	97.1	0.1	-0.62	0.74	0.79	1.60	3.8	0.004	0.84	0.0	0.05	16.63	0.00	2.032	18.55	3.31	2.7	97.3	0.0	0.35	1.08	0.77	0.80	1.14	71930	9170	36	0	1	0	0	logfile
✔	7UZV	26919	2024-02-14	2022-05-09	2.5	2.29	2.44	2.3	0.003	0.58	0.0	0.04	19.05	0.00	1.944	3.69	2.84	1.4	98.3	0.3	1.78	0.62	0.84	3.61	2.3	0.003	0.55	0.0	0.04	18.75	0.00	1.958	6.19	2.84	2.1	97.7	0.2	1.38	0.27	0.61	0.85	3.90	9274	584	4	0	0	63	4592	logfile
✔	7UZ9	26883	2024-02-21	2022-05-08	3.5	4.40	3.63	4.5	0.003	0.59	0.0	0.04	15.47	0.00	2.175	10.65	0.03	2.8	97.2	0.0	0.31	0.66	0.73	1.10	4.5	0.004	0.65	0.0	0.05	14.80	0.00	2.126	13.74	2.33	3.9	96.1	0.0	0.16	0.43	0.66	0.74	0.97	30669	3873	12	0	42	0	0	logfile
✔	7UZ6	26880	2024-02-21	2022-05-08	2.8	3.35	2.92	3.3	0.004	0.56	0.0	0.04	13.21	0.00	2.055	9.49	0.03	3.6	96.4	0.0	-0.38	0.69	0.80	3.12	3.3	0.003	0.57	0.0	0.04	14.94	0.00	2.081	10.43	1.46	3.6	96.4	0.0	-0.18	0.38	0.63	0.76	2.76	30942	3906	12	0	39	0	0	logfile
✔	7UZ5	26879	2024-02-20	2022-05-08	3.2	3.83	3.46	3.7	0.004	0.61	0.0	0.05	14.16	0.00	2.126	9.50	0.07	2.7	97.3	0.0	0.31	0.72	0.80	2.40	3.7	0.003	0.55	0.0	0.05	14.08	0.00	2.130	9.38	1.41	2.7	97.3	0.0	0.47	0.91	0.72	0.82	2.12	27051	3397	8	0	48	0	0	logfile
✔	7UZ7	26881	2024-02-21	2022-05-08	2.9	3.46	3.07	3.4	0.005	0.61	0.0	0.04	13.46	0.01	2.121	9.12	0.00	3.5	96.5	0.0	0.04	0.71	0.78	2.76	3.4	0.004	0.60	0.0	0.04	14.50	0.00	2.176	9.88	1.60	3.8	96.1	0.0	0.03	0.36	0.69	0.80	2.48	30552	3861	15	0	45	0	0	logfile

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