Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UZ7	26881	2024-02-21	2022-05-08	2.9	3.46	3.07	3.4	0.005	0.61	0.0	0.04	13.46	0.01	2.121	9.12	0.00	3.5	96.5	0.0	0.04	0.71	0.78	2.76	3.4	0.004	0.60	0.0	0.04	14.50	0.00	2.176	9.88	1.60	3.8	96.1	0.0	0.03	0.36	0.69	0.80	2.48	30552	3861	15	0	45	0	0	logfile
✔	7UZ5	26879	2024-02-20	2022-05-08	3.2	3.83	3.46	3.7	0.004	0.61	0.0	0.05	14.16	0.00	2.126	9.50	0.07	2.7	97.3	0.0	0.31	0.72	0.80	2.40	3.7	0.003	0.55	0.0	0.05	14.08	0.00	2.130	9.38	1.41	2.7	97.3	0.0	0.47	0.91	0.72	0.82	2.12	27051	3397	8	0	48	0	0	logfile
✔	7UZ8	26882	2024-02-21	2022-05-08	3.1	3.30	3.17	3.3	0.004	0.62	0.0	0.05	14.87	0.00	2.085	10.88	0.06	3.4	96.6	0.0	-0.23	0.68	0.79	3.12	3.3	0.002	0.58	0.0	0.04	14.61	0.00	2.185	10.65	1.40	3.3	96.7	0.0	-0.12	0.40	0.71	0.84	2.62	30075	3801	15	0	33	0	0	logfile
✔	7UZB	26885	2024-02-14	2022-05-08	4.1	4.79	4.12	4.2	0.003	0.60	0.0	0.04	14.48	0.00	2.037	14.67	0.00	3.6	96.4	0.0	0.43	0.90	0.81	—	4.2	0.002	0.56	0.0	0.04	12.73	0.00	2.103	12.72	0.00	3.7	96.3	0.0	0.13	0.94	0.90	0.80	—	8392	1077	4	0	4	0	0	logfile
✔	7UZ9	26883	2024-02-21	2022-05-08	3.5	4.40	3.63	4.5	0.003	0.59	0.0	0.04	15.47	0.00	2.175	10.65	0.03	2.8	97.2	0.0	0.31	0.66	0.73	1.10	4.5	0.004	0.65	0.0	0.05	14.80	0.00	2.126	13.74	2.33	3.9	96.1	0.0	0.16	0.43	0.66	0.74	0.97	30669	3873	12	0	42	0	0	logfile
✔	7XQF	33394	2024-02-25	2022-05-07	2.3	2.69	2.25	2.6	0.005	1.09	0.0	0.04	17.01	0.00	1.942	3.87	0.56	1.6	98.4	0.0	3.06	0.68	0.87	4.51	2.6	0.003	0.54	0.0	0.03	14.95	0.00	2.072	3.93	1.34	2.1	97.9	0.0	3.11	1.05	0.65	0.87	4.60	43140	2412	36	0	168	492	19968	logfile
✔	7XQB	33392	2024-02-25	2022-05-07	3.0	3.07	2.98	3.1	0.006	1.12	0.0	0.04	18.74	0.00	2.280	2.77	1.10	2.0	98.0	0.0	2.22	0.66	0.87	3.09	3.1	0.003	0.59	0.0	0.03	16.03	0.00	2.173	7.03	1.01	4.1	95.9	0.0	2.23	0.84	0.65	0.88	3.01	42852	2424	24	0	168	0	20040	logfile
✔	7XQ9	33391	2024-02-17	2022-05-07	3.3	3.62	3.55	3.8	0.005	0.83	0.0	0.06	14.70	0.01	2.253	1.72	3.89	3.6	96.4	0.0	-2.05	0.52	0.82	2.74	3.8	0.002	0.49	0.0	0.03	15.74	0.00	2.205	3.13	1.53	2.1	97.9	0.0	3.38	0.48	0.53	0.83	2.56	19632	2412	12	0	0	0	0	logfile
✔	7XQ8	33390	2024-02-16	2022-05-07	3.3	3.57	3.29	3.5	0.005	0.76	0.0	0.13	14.24	0.01	1.664	13.03	1.23	6.5	92.9	0.6	-1.08	0.61	0.66	2.30	3.5	0.012	0.95	0.0	0.06	15.34	0.01	1.967	13.30	5.47	8.5	90.9	0.6	-0.99	1.15	0.67	0.78	2.17	12452	1889	10	0	14	0	0	logfile
✔	7XQi	33397	2024-02-14	2022-05-07	3.7	4.27	3.41	4.0	0.006	0.72	0.0	0.04	14.16	0.00	2.304	5.68	2.27	2.1	97.9	0.0	-2.27	0.76	0.86	3.63	3.9	0.003	0.63	0.0	0.04	15.48	0.00	2.192	4.70	1.61	4.4	95.6	0.0	2.67	0.64	0.77	0.85	3.66	9582	1176	6	0	0	0	0	logfile
✔	7XQH	33396	2024-02-14	2022-05-07	3.8	4.45	3.57	4.2	0.005	0.78	0.0	0.04	15.53	0.01	2.337	5.28	2.23	3.6	95.9	0.5	-2.01	0.77	0.84	2.84	4.2	0.004	0.94	1.0	0.04	16.94	0.00	2.147	8.27	4.93	3.7	95.7	0.6	2.53	1.48	0.77	0.85	2.01	9774	1200	6	0	0	0	0	logfile
✔	7XQG	33395	2024-02-14	2022-05-07	3.8	4.58	3.85	4.2	0.002	0.46	0.0	0.03	12.11	0.00	2.268	4.64	5.00	1.5	98.0	0.5	2.98	0.79	0.85	2.01	4.2	0.003	0.76	0.0	0.04	14.99	0.00	2.292	8.46	3.15	3.2	96.8	0.0	2.44	0.73	0.79	0.85	1.25	10206	1206	12	0	12	0	0	logfile
✔	7XQD	33393	2024-02-25	2022-05-07	2.7	3.09	2.64	2.9	0.006	1.17	0.0	0.04	17.82	0.00	2.067	3.24	0.56	2.0	98.0	0.0	3.53	0.63	0.87	4.27	2.9	0.002	0.55	0.0	0.03	15.23	0.00	2.023	7.54	1.44	2.7	97.3	0.0	3.39	1.17	0.64	0.88	4.05	42980	2412	36	0	156	272	19968	logfile
✔	7XQJ	33398	2024-02-14	2022-05-07	4.0	4.56	3.73	4.2	0.007	0.84	0.0	0.05	15.98	0.01	2.401	6.40	6.01	6.5	93.5	0.0	-2.82	0.78	0.85	—	4.3	0.003	0.77	0.0	0.04	16.51	0.00	2.256	9.82	3.10	4.1	95.9	0.0	1.25	0.72	0.78	0.85	—	9960	1224	6	0	0	0	0	logfile
✔	7UY8	26867	2024-02-14	2022-05-06	4.5	8.56	4.38	4.2	0.003	0.63	1.0	0.05	14.55	0.00	2.207	8.69	0.00	6.1	93.9	0.0	-0.66	0.79	0.60	—	4.4	0.003	0.64	0.0	0.04	14.41	0.00	2.222	15.98	0.00	4.8	95.1	0.1	-0.31	1.40	0.92	0.85	—	9552	1161	5	0	1	0	0	logfile
✔	7ZSD	14930	2024-02-13	2022-05-06	3.29	3.62	3.56	3.6	0.003	0.60	0.0	0.05	17.98	0.00	2.226	9.82	0.00	7.0	93.0	0.0	-0.09	0.38	0.74	2.01	3.6	0.003	0.69	0.0	0.05	15.76	0.00	2.254	13.18	3.59	7.0	93.0	0.0	-0.44	0.40	0.38	0.77	0.96	2120	261	3	0	2	0	0	logfile
✔	7ZSA	14928	2024-02-20	2022-05-06	4.0	3.53	3.63	3.5	0.004	0.75	0.0	0.05	16.32	0.01	1.361	6.83	0.00	2.9	97.1	0.0	-1.01	0.76	0.69	—	3.5	0.004	0.67	3.0	0.04	18.12	0.00	1.714	13.97	1.58	3.1	96.9	0.0	0.24	0.47	0.78	0.72	—	86388	9723	50	418	19	0	0	logfile
✔	7UY5	26863	2024-02-20	2022-05-06	3.5	3.20	3.49	3.3	0.002	0.46	0.0	0.04	18.10	0.00	2.182	6.99	0.04	2.8	97.2	0.0	0.64	0.76	0.72	1.86	3.3	0.002	0.51	0.0	0.04	19.02	0.00	2.138	8.50	1.87	3.1	96.9	0.0	0.66	0.41	0.77	0.75	1.70	25772	2690	13	170	2	0	0	logfile
✔	7ZS5	14926	2024-02-17	2022-05-06	3.2	3.53	3.32	3.3	0.002	0.55	0.0	0.03	22.99	0.00	1.329	12.45	0.02	2.5	97.1	0.4	-1.60	0.84	0.78	1.80	3.3	0.005	0.69	0.0	0.04	23.01	0.00	1.916	16.74	3.50	8.5	91.1	0.4	-1.55	0.37	0.86	0.82	1.67	127849	6416	50	3603	24	0	0	logfile
✔	7XPX	33385	2024-02-16	2022-05-06	3.2	3.32	3.18	3.3	0.004	0.61	0.0	0.04	27.53	0.00	2.185	10.26	0.00	3.6	96.4	0.0	0.82	0.67	0.79	2.86	3.3	0.003	0.54	0.0	0.03	27.24	0.00	2.227	9.53	1.92	2.3	97.6	0.1	1.66	1.06	0.57	0.79	2.32	13408	934	11	290	1	0	0	logfile

• ← previous
• Page 208 of 633
• next →