Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XQ0	33387	2024-02-13	2022-05-06	3.0	2.77	3.09	3.2	0.014	1.26	0.0	0.06	13.01	0.01	2.232	7.04	0.86	1.5	98.5	0.0	-6.72	0.49	0.79	4.03	3.2	0.004	0.64	0.0	0.04	14.07	0.00	2.172	8.09	1.73	1.8	98.2	0.0	0.86	1.09	0.43	0.77	3.24	3320	402	1	0	2	0	0	logfile
✔	7ZSD	14930	2024-02-13	2022-05-06	3.29	3.62	3.56	3.6	0.003	0.60	0.0	0.05	17.98	0.00	2.226	9.82	0.00	7.0	93.0	0.0	-0.09	0.38	0.74	2.01	3.6	0.003	0.69	0.0	0.05	15.76	0.00	2.254	13.18	3.59	7.0	93.0	0.0	-0.44	0.40	0.38	0.77	0.96	2120	261	3	0	2	0	0	logfile
✔	7UY8	26867	2024-02-14	2022-05-06	4.5	8.56	4.38	4.2	0.003	0.63	1.0	0.05	14.55	0.00	2.207	8.69	0.00	6.1	93.9	0.0	-0.66	0.79	0.60	—	4.4	0.003	0.64	0.0	0.04	14.41	0.00	2.222	15.98	0.00	4.8	95.1	0.1	-0.31	1.40	0.92	0.85	—	9552	1161	5	0	1	0	0	logfile
✔	7UY6	26865	2024-02-17	2022-05-06	2.9	2.49	2.94	3.0	0.002	0.44	0.0	0.04	18.33	0.00	2.215	4.00	0.06	1.7	98.3	0.0	1.19	0.70	0.81	3.09	2.9	0.002	0.50	0.0	0.04	19.72	0.00	2.205	5.37	2.23	2.4	97.6	0.1	1.38	0.42	0.70	0.84	2.66	18746	1847	9	170	1	0	0	logfile
✘	7UY7	26866	2024-02-16	2022-05-06	4.2	4.18	4.04	3.2	0.002	0.56	1.0	0.04	15.12	0.00	2.203	13.96	0.18	3.8	96.2	0.0	-0.53	0.73	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15161	1808	7	10	1	0	0	logfile
✔	7ZSA	14928	2024-02-20	2022-05-06	4.0	3.53	3.63	3.5	0.004	0.75	0.0	0.05	16.32	0.01	1.361	6.83	0.00	2.9	97.1	0.0	-1.01	0.76	0.69	—	3.5	0.004	0.67	3.0	0.04	18.12	0.00	1.714	13.97	1.58	3.1	96.9	0.0	0.24	0.47	0.78	0.72	—	86388	9723	50	418	19	0	0	logfile
✔	7ZS9	14927	2024-02-20	2022-05-06	3.1	2.94	3.01	3.2	0.004	0.69	0.0	0.05	16.83	0.01	2.117	5.57	0.00	2.5	97.5	0.0	-0.69	0.77	0.74	1.70	3.1	0.004	0.60	0.0	0.04	18.95	0.00	2.094	12.34	2.16	2.9	97.1	0.0	0.58	1.65	0.78	0.80	1.51	86357	9719	50	418	19	0	0	logfile
✘	7ZRZ	14923	2024-02-13	2022-05-05	3.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✔	7ZRV	14922	2024-02-20	2022-05-05	2.8	3.68	3.14	3.4	0.004	0.63	0.0	0.05	18.63	0.00	2.089	9.52	0.00	4.7	95.1	0.2	-0.19	0.79	0.82	2.37	3.4	0.003	0.64	0.0	0.05	14.69	0.00	2.109	10.86	1.51	5.4	94.5	0.1	-0.28	0.46	0.75	0.80	2.10	28055	3429	38	0	88	0	0	logfile
✔	7UXA	26856	2024-02-13	2022-05-05	3.28	3.56	3.32	3.5	0.003	0.58	0.0	0.04	16.77	0.00	2.084	7.47	0.88	5.2	94.8	0.0	-0.97	0.78	0.82	2.37	3.5	0.003	0.86	0.0	0.04	18.20	0.00	2.072	8.90	2.20	4.1	95.8	0.1	0.34	0.54	0.77	0.80	1.62	8120	820	5	78	2	0	0	logfile
✔	7UXC	26857	2024-02-21	2022-05-05	3.2	3.49	3.37	3.4	0.005	0.89	0.0	0.11	15.05	0.01	1.971	1.67	0.00	4.7	95.2	0.1	-1.42	0.78	0.76	2.02	3.4	0.003	0.56	0.0	0.04	15.54	0.00	1.817	7.39	0.65	4.2	95.7	0.0	0.63	1.17	0.80	0.81	2.21	95147	5959	23	2	5	0	47565	logfile
✔	7UXE	26858	2024-02-14	2022-05-05	3.38	3.63	3.46	3.9	0.005	0.86	0.0	0.04	19.49	0.01	2.026	14.38	2.00	14.2	85.8	0.0	-2.79	0.58	0.77	1.31	3.9	0.005	0.76	0.0	0.04	18.64	0.00	2.193	10.19	3.70	14.4	85.6	0.0	-0.15	0.75	0.56	0.77	1.61	9480	1150	10	0	0	0	0	logfile
✔	7UXF	26860	2024-02-17	2022-05-05	2.7	2.95	2.73	3.0	0.008	0.81	1.0	0.05	14.77	0.01	1.983	6.62	1.71	1.9	98.1	0.0	0.24	0.66	0.86	4.48	3.0	0.003	0.58	0.0	0.04	16.23	0.00	1.940	5.90	1.39	2.3	97.7	0.0	0.59	0.37	0.62	0.85	4.33	17556	2220	18	0	12	60	0	logfile
✔	7UX2	26846	2024-02-13	2022-05-04	2.9	3.04	—	3.0	0.003	0.64	0.0	0.04	14.24	0.00	1.999	4.45	0.00	5.1	94.9	0.0	0.24	0.74	0.78	3.35	3.0	0.004	0.59	0.0	0.04	16.44	0.00	1.824	8.60	1.56	5.4	94.6	0.0	0.14	0.48	0.73	0.82	3.14	54396	3421	20	2	4	0	27147	logfile
✔	7ZRK	14917	2024-02-15	2022-05-04	3.1	2.68	3.17	3.0	0.005	0.77	0.0	0.05	16.23	0.01	2.251	6.83	0.00	4.5	95.5	0.0	-0.25	0.63	0.81	2.05	3.0	0.003	0.55	0.0	0.04	16.38	0.00	2.170	9.05	1.15	3.8	96.2	0.0	1.00	0.27	0.63	0.83	2.10	11050	1450	6	0	15	0	0	logfile
✘	7ZRi	14915	2024-02-15	2022-05-04	3.5	3.62	3.50	3.6	0.006	0.92	0.0	0.05	16.16	0.01	2.196	7.56	0.00	4.6	95.4	0.0	-1.22	0.70	0.82	1.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11014	1450	6	0	9	0	0	logfile
✔	7ZRE	14912	2024-02-15	2022-05-04	3.4	2.77	3.31	3.2	0.006	0.93	1.0	0.05	16.34	0.01	2.231	7.35	0.00	4.3	95.7	0.0	-0.86	0.61	0.78	2.49	3.3	0.002	0.56	0.0	0.04	16.61	0.00	2.176	11.45	1.68	3.8	96.2	0.0	0.82	0.28	0.62	0.81	2.28	10996	1447	6	0	11	0	0	logfile
✔	7ZRG	14913	2024-02-15	2022-05-04	3.5	3.19	3.44	3.3	0.004	0.78	0.0	0.05	16.91	0.01	2.291	6.53	0.00	4.5	95.5	0.0	-1.09	0.64	0.80	1.65	3.3	0.003	0.55	0.0	0.04	16.89	0.00	2.154	9.82	2.03	4.0	96.0	0.0	0.37	0.30	0.64	0.82	1.39	11032	1448	6	0	10	0	0	logfile
✔	7ZRM	14919	2024-02-15	2022-05-04	3.7	3.18	3.69	3.5	0.004	0.81	0.0	0.05	14.87	0.01	2.260	7.18	0.00	5.1	94.9	0.0	-1.35	0.64	0.79	0.91	3.5	0.005	0.63	0.0	0.04	16.42	0.00	2.136	12.90	2.03	5.2	94.8	0.0	-0.10	1.07	0.64	0.81	1.32	10839	1450	6	0	7	0	0	logfile
✔	7ZRD	14911	2024-02-15	2022-05-04	3.3	3.45	3.22	3.4	0.004	0.81	0.0	0.05	16.19	0.01	2.272	5.42	0.00	4.1	95.9	0.0	-0.83	0.70	0.84	1.89	3.4	0.004	0.57	0.0	0.04	16.30	0.00	2.159	9.81	1.94	4.2	95.8	0.0	0.76	0.37	0.69	0.86	1.91	11037	1452	6	0	12	0	0	logfile

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