Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7ZRi	14915	2024-02-15	2022-05-04	3.5	3.62	3.50	3.6	0.006	0.92	0.0	0.05	16.16	0.01	2.196	7.56	0.00	4.6	95.4	0.0	-1.22	0.70	0.82	1.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11014	1450	6	0	9	0	0	logfile
✔	7ZRE	14912	2024-02-15	2022-05-04	3.4	2.77	3.31	3.2	0.006	0.93	1.0	0.05	16.34	0.01	2.231	7.35	0.00	4.3	95.7	0.0	-0.86	0.61	0.78	2.49	3.3	0.002	0.56	0.0	0.04	16.61	0.00	2.176	11.45	1.68	3.8	96.2	0.0	0.82	0.28	0.62	0.81	2.28	10996	1447	6	0	11	0	0	logfile
✔	7ZRM	14919	2024-02-15	2022-05-04	3.7	3.18	3.69	3.5	0.004	0.81	0.0	0.05	14.87	0.01	2.260	7.18	0.00	5.1	94.9	0.0	-1.35	0.64	0.79	0.91	3.5	0.005	0.63	0.0	0.04	16.42	0.00	2.136	12.90	2.03	5.2	94.8	0.0	-0.10	1.07	0.64	0.81	1.32	10839	1450	6	0	7	0	0	logfile
✔	7ZRG	14913	2024-02-15	2022-05-04	3.5	3.19	3.44	3.3	0.004	0.78	0.0	0.05	16.91	0.01	2.291	6.53	0.00	4.5	95.5	0.0	-1.09	0.64	0.80	1.65	3.3	0.003	0.55	0.0	0.04	16.89	0.00	2.154	9.82	2.03	4.0	96.0	0.0	0.37	0.30	0.64	0.82	1.39	11032	1448	6	0	10	0	0	logfile
✔	7ZRC	14910	2024-02-21	2022-05-04	3.5	3.13	3.03	3.0	0.006	0.64	0.0	0.05	10.10	0.01	2.125	7.43	0.99	3.3	96.7	0.0	-0.03	0.71	0.72	2.99	3.0	0.003	0.55	0.0	0.04	12.29	0.00	2.117	7.00	1.65	2.9	97.0	0.0	0.31	0.51	0.72	0.72	2.62	30724	3852	24	0	52	0	0	logfile
✔	7ZR8	14886	2024-02-13	2022-05-03	3.7	3.81	3.43	3.8	0.003	0.46	0.0	0.04	8.42	0.00	2.181	7.02	0.74	3.9	96.1	0.0	-0.94	0.72	0.82	2.69	3.8	0.004	0.58	0.0	0.04	12.94	0.00	2.179	10.32	3.47	4.9	95.1	0.0	-0.91	0.49	0.72	0.82	2.17	3693	471	4	0	1	0	0	logfile
✔	7UWF	26831	2024-02-15	2022-05-03	2.7	2.78	2.77	2.7	0.004	0.62	0.0	0.04	12.06	0.01	2.127	6.27	0.00	3.0	97.0	0.0	1.46	0.77	0.82	2.47	2.7	0.004	0.65	0.0	0.04	15.60	0.00	2.060	7.63	2.08	3.0	97.0	0.0	1.77	0.37	0.78	0.85	2.66	13174	1760	4	0	0	0	0	logfile
✔	7UWQ	26838	2024-02-18	2022-05-03	3.05	3.55	3.19	3.5	0.005	0.57	0.0	0.04	13.81	0.00	2.313	3.18	0.00	3.0	97.0	0.0	-0.63	0.70	0.86	3.23	3.5	0.002	0.47	0.0	0.04	15.07	0.00	2.280	4.63	0.96	1.4	98.6	0.0	0.58	0.24	0.72	0.87	2.48	20538	2598	6	0	0	0	0	logfile
✔	7UWM	26836	2024-02-13	2022-05-03	2.5	2.14	2.51	1.9	0.004	0.59	0.0	0.04	17.88	0.00	2.107	6.68	2.96	3.0	97.0	0.0	-0.69	0.80	0.79	2.42	1.8	0.004	0.61	0.0	0.05	17.82	0.00	2.115	8.15	5.05	3.8	96.2	0.0	-0.66	0.23	0.80	0.80	2.51	7972	967	9	0	9	0	0	logfile
✔	7ZR5	14883	2024-02-17	2022-05-03	3.9	2.55	4.11	2.3	0.009	1.02	1.0	0.04	16.99	0.01	2.119	9.63	0.26	9.1	90.3	0.5	-1.57	0.70	0.70	1.62	2.3	0.005	0.70	0.0	0.04	17.79	0.00	2.088	9.78	3.69	9.7	89.9	0.3	-1.46	0.93	0.71	0.72	1.32	17518	2145	7	0	2	0	0	logfile
✔	7UWC	26828	2024-02-24	2022-05-03	4.0	4.38	4.18	2.5	0.005	0.70	1.0	0.05	10.20	0.00	2.216	5.60	0.50	5.0	94.8	0.2	1.98	0.76	0.74	—	2.3	0.002	0.54	0.0	0.04	11.38	0.00	2.129	6.46	1.34	4.0	95.9	0.1	2.35	0.37	0.82	0.84	—	46123	7764	31	0	56	0	0	logfile
✔	7XP6	33366	2024-02-14	2022-05-03	3.01	2.40	3.14	2.1	0.003	0.59	0.0	0.04	13.31	0.01	2.100	7.69	0.00	2.6	97.4	0.0	1.78	0.74	0.75	2.85	2.1	0.003	0.55	0.0	0.04	14.64	0.00	2.231	8.30	2.42	2.8	97.2	0.0	1.59	1.11	0.75	0.77	2.44	8336	1051	5	0	1	0	0	logfile
✔	7UWN	26837	2024-02-15	2022-05-03	3.01	2.26	3.04	1.6	0.004	0.64	0.0	0.04	16.39	0.00	2.105	14.51	2.21	6.1	93.9	0.0	-1.09	0.66	0.63	1.06	1.5	0.003	0.59	0.0	0.04	16.58	0.00	2.136	12.43	4.68	5.3	94.7	0.0	-0.89	0.30	0.66	0.63	0.69	10602	1325	12	0	11	0	0	logfile
✔	7UW9	26825	2024-02-24	2022-05-03	4.2	4.40	4.30	2.2	0.003	0.62	2.0	0.04	10.30	0.00	2.207	7.60	1.21	3.9	96.0	0.1	2.14	0.79	0.78	—	2.1	0.002	0.54	0.0	0.04	10.11	0.00	2.148	7.79	0.00	4.5	95.5	0.1	2.29	1.67	0.80	0.79	—	46156	7764	31	0	56	0	0	logfile
✔	7ZR0	14875	2024-02-16	2022-05-03	3.4	2.38	3.28	2.2	0.007	1.00	0.0	0.05	19.99	0.01	2.011	10.56	0.19	10.1	89.3	0.6	-2.37	0.78	0.78	1.91	2.2	0.003	0.68	0.0	0.04	20.02	0.00	2.107	8.50	4.44	8.8	90.9	0.4	-1.63	1.27	0.75	0.77	2.02	14052	1716	6	0	2	0	0	logfile
✔	7XP4	33364	2024-02-14	2022-05-03	3.01	2.36	3.08	2.2	0.003	0.58	0.0	0.04	12.47	0.00	2.204	9.62	0.00	2.9	97.0	0.1	0.87	0.75	0.75	2.96	2.2	0.003	0.59	0.0	0.04	15.41	0.00	2.104	9.62	2.71	3.0	97.0	0.0	1.24	0.41	0.76	0.78	1.99	8437	1066	5	0	0	0	0	logfile
✔	7UWJ	26833	2024-02-13	2022-05-03	3.2	2.38	3.23	2.0	0.004	0.79	1.0	0.05	13.20	0.01	2.189	11.24	0.00	4.1	95.9	0.0	-2.14	0.66	0.61	2.04	1.5	0.003	0.65	0.0	0.04	14.99	0.01	2.243	9.91	3.01	5.6	94.4	0.0	-2.12	0.46	0.68	0.65	2.01	5314	664	6	0	6	0	0	logfile
✔	7UWA	26826	2024-02-24	2022-05-03	4.3	4.39	4.41	2.3	0.003	0.61	1.0	0.04	10.20	0.00	2.202	7.93	1.05	3.8	96.1	0.0	2.06	0.79	0.79	—	2.1	0.004	0.58	0.0	0.04	10.13	0.00	2.120	9.04	0.00	5.7	94.3	0.0	2.06	1.63	0.82	0.83	—	46194	7772	31	0	56	0	0	logfile
✔	7UWL	26835	2024-02-14	2022-05-03	3.7	2.40	3.59	1.9	0.005	0.78	1.0	0.05	16.74	0.00	2.137	15.51	0.63	7.1	92.9	0.0	-1.39	0.68	0.64	1.65	1.7	0.003	0.78	0.0	0.05	16.71	0.00	2.099	14.75	5.05	7.1	92.9	0.0	-1.54	0.41	0.68	0.65	1.61	10100	1236	16	0	22	0	0	logfile
✔	7ZR9	14887	2024-02-21	2022-05-03	4.0	4.37	4.12	4.1	0.006	0.86	3.0	0.05	10.86	0.01	2.158	8.55	1.22	3.7	96.2	0.1	-0.10	0.81	0.77	—	4.1	0.003	0.60	0.0	0.04	12.83	0.00	2.136	11.54	2.39	4.3	95.7	0.0	0.40	0.67	0.82	0.78	—	31014	3899	24	0	54	0	0	logfile

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