Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UTR	26787	2024-02-22	2022-04-27	3.7	2.66	3.48	2.9	0.008	0.92	0.0	0.05	12.99	0.01	2.067	0.73	0.66	3.7	96.3	0.0	-0.87	0.62	0.74	3.84	2.3	0.007	0.74	0.0	0.05	15.91	0.01	2.034	12.85	3.81	4.6	95.4	0.0	-0.63	0.54	0.64	0.75	3.01	32764	3976	10	0	202	0	0	logfile
✔	7ZP9	14851	2024-02-18	2022-04-27	2.82	2.56	2.83	2.8	0.008	1.13	4.0	0.06	23.10	0.00	1.266	15.02	0.88	2.2	97.6	0.2	1.50	0.63	0.86	3.61	2.8	0.003	0.63	0.0	0.04	15.73	0.00	1.905	8.81	1.93	2.2	97.8	0.0	2.59	0.93	0.64	0.88	2.93	23097	2804	34	0	60	45	0	logfile
✔	7UTS	26788	2024-02-19	2022-04-27	3.6	2.51	3.41	2.1	0.008	0.97	0.0	0.05	13.01	0.01	2.296	0.78	0.99	4.0	96.0	0.0	-1.10	0.59	0.65	2.93	2.1	0.006	0.86	1.0	0.04	15.22	0.01	2.056	12.90	3.26	3.8	96.2	0.0	-0.60	1.21	0.61	0.67	2.50	25804	3092	10	0	203	0	0	logfile
✔	7ZPK	14856	2024-02-19	2022-04-27	3.81	7.29	3.88	5.6	0.004	0.81	0.0	0.05	15.30	0.02	2.214	2.12	0.68	2.8	97.2	0.0	0.04	0.81	0.55	-0.44	4.0	0.003	0.67	0.0	0.04	17.36	0.00	1.910	21.18	2.63	5.7	94.3	0.0	0.37	2.36	0.86	0.72	-0.64	25935	1513	3	55	0	0	12760	logfile
✔	7XMZ	33308	2024-02-21	2022-04-27	3.25	3.45	3.31	3.4	0.009	1.06	5.0	0.07	13.61	0.00	1.460	5.15	0.47	4.4	95.5	0.1	-1.48	0.73	0.80	3.38	3.4	0.003	0.58	0.0	0.04	13.68	0.00	2.157	6.33	1.90	3.5	96.5	0.0	-0.46	1.04	0.74	0.81	2.88	29203	3745	12	0	32	0	0	logfile
✔	7UTP	26786	2024-02-21	2022-04-27	3.8	2.72	3.52	2.2	0.007	1.10	0.0	0.06	15.95	0.01	2.076	3.73	0.42	3.8	96.1	0.0	-1.38	0.62	0.72	2.91	3.1	0.003	0.69	0.0	0.04	16.78	0.01	2.088	12.14	4.04	3.7	96.3	0.0	-0.60	0.44	0.64	0.74	2.67	31056	3762	10	0	207	0	0	logfile
✔	7ZPL	14857	2024-02-17	2022-04-27	3.12	3.95	3.13	3.2	0.002	0.39	0.0	0.04	14.56	0.00	2.178	5.65	0.00	2.2	97.8	0.0	0.80	0.92	0.85	2.46	3.2	0.003	0.56	0.0	0.04	15.64	0.00	2.117	8.82	1.44	2.9	97.1	0.0	1.04	4.21	0.93	0.89	2.37	19919	2422	9	24	1	0	0	logfile
✘	7XMV	33306	2024-02-16	2022-04-27	2.6	2.75	2.70	2.8	0.015	0.96	0.0	0.05	15.36	0.04	1.853	5.34	1.18	3.6	96.4	0.0	-0.87	0.72	0.86	4.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15228	1842	18	0	30	810	0	logfile
✔	7ZPM	14858	2024-02-17	2022-04-27	2.81	3.56	2.81	3.0	0.002	0.49	0.0	0.04	13.14	0.00	1.820	6.91	0.14	3.5	96.4	0.1	-0.23	0.93	0.88	3.42	3.0	0.003	0.66	0.0	0.04	15.08	0.00	2.140	9.14	0.89	3.1	96.9	0.0	0.81	1.06	0.93	0.91	3.13	19330	2412	6	0	0	0	0	logfile
✔	7UTV	26790	2024-02-22	2022-04-27	3.0	2.33	2.88	2.1	0.009	0.92	0.0	0.05	13.27	0.01	2.234	0.87	1.24	2.4	97.5	0.0	-0.60	0.65	0.81	5.31	2.1	0.003	0.61	0.0	0.04	16.17	0.00	2.144	8.28	2.36	1.8	98.2	0.0	-0.27	0.46	0.65	0.81	3.96	32546	3957	10	0	191	0	0	logfile
✔	7UTJ	26772	2024-02-19	2022-04-27	2.77	3.05	2.85	3.1	0.009	0.91	0.0	0.06	16.79	0.01	1.927	7.51	3.88	3.1	96.9	0.0	0.03	0.67	0.85	3.76	3.0	0.004	0.60	0.0	0.04	17.76	0.00	2.136	7.59	1.58	2.5	97.5	0.0	1.18	1.59	0.64	0.86	3.32	24591	3156	24	0	12	21	0	logfile
✔	7ZPA	14852	2024-02-14	2022-04-27	3.9	4.14	3.88	4.0	0.006	0.66	0.0	0.04	19.80	0.01	2.214	9.92	0.00	6.4	93.6	0.0	-0.40	0.76	0.75	1.14	4.0	0.003	0.61	0.0	0.04	21.11	0.00	2.106	10.32	1.55	5.3	94.7	0.0	-0.56	0.47	0.75	0.75	0.71	9121	874	4	95	0	0	0	logfile
✔	7XN3	33309	2024-02-16	2022-04-27	2.9	3.05	2.92	3.0	0.006	0.62	0.0	0.05	13.52	0.00	2.174	6.06	2.37	7.9	92.1	0.0	-0.76	0.72	0.84	3.66	3.0	0.003	0.57	0.0	0.05	14.66	0.00	2.205	5.56	1.45	6.1	93.9	0.0	0.27	0.34	0.74	0.86	3.45	14016	1830	18	0	12	54	0	logfile
✔	7UTN	26782	2024-02-13	2022-04-27	2.74	3.33	2.90	3.1	0.007	0.68	0.0	0.04	23.53	0.00	2.080	8.58	0.00	1.8	98.2	0.0	0.01	0.86	0.88	4.65	3.1	0.003	0.55	0.0	0.03	23.18	0.00	2.178	8.50	0.87	1.0	99.0	0.0	0.90	0.28	0.82	0.85	3.82	8003	397	4	228	0	0	0	logfile
✔	7XMX	33307	2024-02-20	2022-04-27	3.62	3.63	3.44	22.0	0.012	1.30	7.0	0.09	12.65	0.01	1.407	4.82	1.34	6.6	93.3	0.1	-0.95	0.29	0.01	0.23	21.0	0.003	0.66	0.0	0.04	14.30	0.00	2.124	10.62	2.07	5.6	94.3	0.1	-0.83	1.07	0.32	0.14	0.16	28727	3700	12	0	24	0	0	logfile
✔	7UTU	26789	2024-02-22	2022-04-27	3.0	2.33	2.86	2.0	0.006	0.99	0.0	0.05	15.29	0.01	2.067	2.87	0.26	2.8	97.2	0.0	-1.20	0.65	0.77	4.45	2.0	0.005	0.77	3.0	0.05	16.32	0.01	1.923	11.32	2.71	1.9	98.1	0.0	-0.60	0.43	0.66	0.78	3.79	33004	4003	10	0	210	0	0	logfile
✔	7ZPJ	14855	2024-02-19	2022-04-27	3.81	3.24	3.86	6.5	0.004	0.86	0.0	0.05	15.40	0.01	2.159	2.94	0.67	3.3	96.7	0.0	0.22	0.54	0.33	0.15	2.9	0.003	0.64	0.0	0.04	17.29	0.01	1.980	12.22	2.33	4.5	95.5	0.0	0.29	1.48	0.64	0.57	0.40	23479	1355	3	55	0	0	11508	logfile
✔	7ZP8	14850	2024-02-21	2022-04-26	2.2	3.37	2.30	2.5	0.008	1.05	2.0	0.11	25.35	0.00	1.813	5.05	1.68	4.7	95.1	0.2	-0.45	0.78	0.87	4.53	2.5	0.006	0.61	0.0	0.04	23.14	0.00	2.055	7.76	1.80	4.7	95.3	0.1	0.10	1.62	0.81	0.93	4.16	90951	3145	32	3095	0	0	0	logfile
✔	7USX	26742	2024-02-16	2022-04-26	3.09	3.45	3.15	3.4	0.004	0.86	0.0	0.04	17.36	0.01	2.223	9.94	0.14	3.7	96.3	0.0	1.65	0.62	0.78	1.63	3.4	0.003	0.51	0.0	0.04	16.80	0.00	2.241	6.85	3.23	3.7	96.3	0.0	1.76	0.89	0.57	0.79	1.46	14220	1670	12	0	54	0	0	logfile
✔	7ZoL	14847	2024-02-16	2022-04-26	3.03	3.33	3.14	3.3	0.003	0.64	0.0	0.05	17.39	0.00	2.216	6.74	0.20	6.5	92.6	0.8	-0.47	0.69	0.74	1.68	3.3	0.003	0.66	0.0	0.04	18.08	0.00	2.194	8.43	0.66	7.1	92.1	0.7	-0.87	0.40	0.69	0.78	1.98	15440	1852	4	39	4	0	0	logfile

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