Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XNo	33321	2024-02-16	2022-04-29	2.54	2.96	2.54	2.8	0.002	0.53	0.0	0.04	12.89	0.00	2.215	5.72	0.12	4.5	95.4	0.1	1.92	0.69	0.85	3.07	2.8	0.004	0.56	0.0	0.04	15.12	0.00	2.208	5.78	1.27	5.2	94.7	0.1	1.79	0.27	0.69	0.87	2.94	15888	2085	15	0	3	0	0	logfile
✔	7XNV	33327	2024-02-17	2022-04-29	3.4	3.18	3.11	3.2	0.005	1.07	0.0	0.05	16.87	0.00	2.213	7.73	0.90	1.0	98.4	0.6	0.24	0.69	0.85	2.90	3.2	0.003	0.48	0.0	0.04	16.83	0.00	2.150	5.48	2.44	0.9	99.1	0.0	2.55	0.36	0.70	0.88	2.33	18378	2088	24	0	114	0	0	logfile
✔	7XNK	33317	2024-02-21	2022-04-29	2.6	3.10	2.61	3.2	0.020	1.10	0.0	0.09	12.81	0.01	2.092	1.62	0.73	3.1	96.9	0.0	-1.76	0.61	0.79	3.72	3.1	0.003	0.66	1.0	0.09	16.92	0.00	2.057	5.97	1.33	1.1	98.9	0.0	2.53	1.06	0.58	0.79	2.97	31500	1968	12	0	8	0	15652	logfile
✔	7XNL	33318	2024-02-21	2022-04-29	3.1	3.41	3.13	3.4	0.014	0.99	0.0	0.06	14.78	0.00	2.084	3.23	0.00	3.9	96.1	0.0	-2.27	0.62	0.78	2.85	3.4	0.004	0.56	0.0	0.04	17.09	0.00	2.085	10.61	2.00	1.5	98.5	0.0	1.36	1.54	0.61	0.80	2.94	31688	1968	16	0	12	0	15652	logfile
✔	7UV0	26808	2024-02-13	2022-04-29	3.1	3.20	3.07	3.2	0.005	0.61	0.0	0.04	13.42	0.00	2.160	5.85	0.51	7.7	92.3	0.0	0.23	0.59	0.79	2.75	3.3	0.003	0.58	0.0	0.04	15.02	0.00	2.290	7.41	2.28	5.5	94.5	0.0	1.71	1.12	0.54	0.76	1.89	3784	501	1	0	4	0	0	logfile
✔	7ZQB	14869	2024-02-20	2022-04-29	3.88	3.88	3.85	3.8	0.003	0.56	0.0	0.05	13.10	0.00	1.812	10.84	0.03	4.6	95.4	0.0	-1.99	0.83	0.78	1.89	3.8	0.005	0.69	0.0	0.05	15.13	0.00	2.105	15.05	2.86	5.1	94.8	0.0	-1.44	0.84	0.86	0.85	2.08	86580	11109	36	0	0	0	0	logfile
✔	7ZQ6	14865	2024-02-20	2022-04-29	2.75	3.18	3.04	2.9	0.009	0.93	2.0	0.08	24.80	0.00	2.140	5.42	3.67	5.0	94.8	0.2	-0.70	0.76	0.85	2.90	2.8	0.005	0.58	0.0	0.04	23.70	0.00	2.087	9.38	4.95	4.5	95.5	0.1	0.05	1.20	0.78	0.89	3.22	90507	3091	32	3095	0	0	0	logfile
✔	7XNS	33325	2024-02-20	2022-04-29	3.48	3.93	3.54	3.8	0.004	0.65	0.0	0.05	15.42	0.00	2.252	6.45	0.00	4.8	95.2	0.0	-0.65	0.79	0.78	2.56	3.8	0.002	0.58	0.0	0.04	14.80	0.00	2.158	5.38	2.17	4.1	95.9	0.0	-0.47	0.54	0.82	0.83	2.16	26595	3285	24	0	66	0	0	logfile
✔	7ZQ5	14864	2024-02-20	2022-04-29	2.7	3.10	2.72	2.9	0.012	1.13	1.0	0.11	25.20	0.01	2.104	6.00	4.15	5.8	93.8	0.4	-1.31	0.77	0.87	4.44	2.9	0.005	0.59	0.0	0.04	23.51	0.00	2.073	9.26	3.51	4.5	95.4	0.1	-0.25	1.16	0.78	0.90	3.59	88848	3088	30	3018	0	0	0	logfile
✔	7XN6	33312	2024-02-13	2022-04-28	3.45	3.69	3.42	3.6	0.007	0.96	2.0	0.06	15.94	0.01	1.596	11.25	0.70	8.6	91.4	0.0	-3.19	0.79	0.79	2.08	3.6	0.004	0.63	0.0	0.04	17.27	0.00	2.120	10.96	3.63	8.3	91.7	0.0	-2.53	0.41	0.80	0.83	2.22	6874	861	6	0	2	0	0	logfile
✔	7UUQ	26800	2024-02-13	2022-04-28	3.1	3.45	2.98	3.3	0.018	1.82	0.0	0.06	18.29	0.01	1.865	20.35	0.00	0.0	100.0	0.0	-9.31	0.68	0.85	2.95	3.3	0.118	4.54	13.0	0.23	31.76	0.03	1.584	57.12	19.78	66.7	30.4	3.0	-10.84	0.67	0.73	0.90	3.59	4760	364	98	0	98	0	0	logfile
✘	7ZPo	14859	2024-02-16	2022-04-28	3.24	2.81	3.17	3.1	0.004	0.73	0.0	0.05	16.16	0.00	2.053	10.37	0.00	1.3	98.7	0.0	1.71	0.65	0.82	2.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15102	1932	20	0	16	0	0	logfile
✔	7UTZ	26795	2024-02-19	2022-04-28	2.4	2.07	—	2.4	0.004	0.69	0.0	0.04	12.46	0.01	2.137	3.96	0.08	3.0	97.0	0.0	-0.05	0.66	0.68	3.51	1.6	0.003	0.58	0.0	0.04	15.04	0.00	1.933	9.01	1.71	4.0	96.0	0.0	-0.22	0.77	0.72	0.76	3.60	23679	1536	10	0	8	0	11632	logfile
✔	7XN5	33311	2024-02-13	2022-04-28	3.18	3.41	3.11	3.3	0.005	0.69	0.0	0.05	16.22	0.00	2.242	8.51	0.14	7.6	92.4	0.0	-1.89	0.83	0.84	3.17	3.3	0.003	0.53	0.0	0.04	16.66	0.00	2.142	9.52	2.07	6.6	93.4	0.0	-1.67	0.31	0.83	0.86	2.66	6955	873	5	0	2	0	0	logfile
✔	7ZPR	14862	2024-02-18	2022-04-28	3.56	3.13	3.58	3.6	0.005	0.80	4.0	0.05	14.45	0.00	1.919	9.58	0.89	2.3	97.5	0.2	1.50	0.59	0.77	2.00	3.5	0.003	0.64	0.0	0.04	16.49	0.00	1.905	11.36	2.14	2.0	98.0	0.0	2.47	1.50	0.61	0.81	2.09	21350	2766	24	0	20	0	0	logfile
✔	7XN7	33313	2024-02-15	2022-04-28	3.1	3.76	3.04	3.1	0.004	0.50	0.0	0.04	14.59	0.00	2.019	6.56	0.00	2.2	97.8	0.0	1.50	0.80	0.70	1.58	3.1	0.008	0.65	0.0	0.04	15.94	0.00	1.996	10.65	0.56	3.2	96.8	0.0	1.43	0.51	0.85	0.85	1.56	66076	7929	33	114	11	0	0	logfile
✔	7XNH	33315	2024-02-17	2022-04-28	3.1	2.98	2.73	2.9	0.006	1.12	0.0	0.05	13.57	0.01	2.144	6.68	0.61	0.6	99.4	0.0	-0.23	0.72	0.87	4.77	2.9	0.003	0.48	0.0	0.04	13.66	0.00	2.348	5.01	1.18	0.9	99.1	0.0	2.66	0.97	0.73	0.84	3.07	19224	2172	24	0	132	0	0	logfile
✔	7XN4	33310	2024-02-13	2022-04-28	3.35	3.60	3.25	3.5	0.005	0.79	1.0	0.05	15.38	0.01	2.223	8.84	0.70	9.8	90.2	0.0	-2.93	0.79	0.81	2.84	3.5	0.004	0.64	0.0	0.04	16.33	0.00	2.137	10.84	2.94	9.7	90.3	0.0	-2.30	0.93	0.80	0.84	2.35	6859	859	5	0	1	0	0	logfile
✔	7ZPP	14860	2024-02-22	2022-04-28	4.5	3.20	4.54	4.6	0.003	0.64	0.0	0.04	15.32	0.00	2.166	11.62	0.00	3.8	96.1	0.1	0.57	0.62	0.53	—	4.4	0.004	0.81	1.0	0.05	15.82	0.00	2.067	19.12	0.03	5.2	94.7	0.1	-0.45	1.73	0.67	0.66	—	33171	3903	20	80	0	0	0	logfile
✔	7XNi	33316	2024-02-21	2022-04-28	3.5	4.10	3.70	3.9	0.012	1.23	0.0	0.07	11.50	0.01	2.028	20.98	0.00	4.5	95.3	0.2	-4.06	0.64	0.75	0.60	3.9	0.004	0.64	0.0	0.03	16.23	0.00	2.028	14.00	3.28	2.6	97.4	0.0	1.54	1.19	0.64	0.76	1.07	31368	1968	8	0	0	0	15652	logfile

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