Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XoB	33343	2024-02-22	2022-05-01	3.3	2.37	3.35	2.1	0.005	0.92	12.0	0.08	13.73	0.01	1.329	8.08	0.57	4.9	95.0	0.2	-3.07	0.57	0.43	1.44	2.1	0.004	0.76	0.0	0.05	16.10	0.00	2.121	12.61	2.88	5.0	95.0	0.0	-0.96	1.24	0.74	0.78	2.17	34108	4260	10	0	39	0	0	logfile
✔	7XoV	33360	2024-02-14	2022-05-01	3.0	3.23	3.00	6.0	0.019	1.84	0.0	0.09	10.85	0.02	2.322	6.84	0.90	3.0	96.9	0.1	0.50	0.14	0.02	0.62	3.3	0.003	0.73	0.0	0.04	15.48	0.00	2.051	10.57	1.79	3.8	96.1	0.1	0.33	1.71	0.48	0.61	1.14	8218	1036	5	0	1	1	0	logfile
✔	7XoJ	33349	2024-02-13	2022-05-01	2.8	3.84	2.82	3.2	0.003	0.48	0.0	0.04	13.28	0.00	2.189	10.04	0.00	0.9	99.1	0.0	2.28	0.88	0.87	2.08	3.2	0.003	0.56	0.0	0.04	14.86	0.00	2.115	11.83	0.57	1.0	99.0	0.0	2.16	0.27	0.88	0.88	1.98	53970	7336	14	0	0	0	0	logfile
✔	7XoP	33355	2024-02-13	2022-05-01	3.2	3.56	3.01	3.4	0.003	0.49	0.0	0.04	11.43	0.00	2.190	8.30	0.00	1.1	98.9	0.0	2.31	0.56	0.86	3.54	3.4	0.005	0.63	0.0	0.04	13.18	0.00	2.180	10.73	0.25	1.1	98.9	0.0	1.87	0.40	0.59	0.89	2.88	3855	524	1	0	0	0	0	logfile
✔	7XoQ	33356	2024-02-13	2022-05-01	3.3	3.58	3.06	3.4	0.003	0.54	0.0	0.04	11.31	0.00	2.277	8.56	0.00	1.0	99.0	0.0	2.13	0.56	0.85	2.21	3.4	0.002	0.52	0.0	0.04	14.45	0.00	2.347	8.04	1.24	1.0	99.0	0.0	2.53	0.38	0.58	0.87	1.52	3855	524	1	0	0	0	0	logfile
✔	7Xo3	33335	2024-02-13	2022-04-30	2.6	2.32	1.68	2.7	0.002	0.41	0.0	0.05	12.37	0.00	2.223	4.70	0.00	8.2	91.8	0.0	-3.31	0.45	0.81	5.78	2.6	0.004	0.57	0.0	0.05	16.17	0.00	2.274	2.63	3.03	11.7	88.3	0.0	-1.86	0.39	0.50	0.85	5.90	2598	378	6	0	0	0	0	logfile
✔	7XNZ	33331	2024-02-15	2022-04-30	3.6	3.72	3.56	3.7	0.004	0.60	0.0	0.04	13.12	0.00	2.146	35.80	3.42	12.0	87.7	0.3	-3.94	0.74	0.83	2.51	3.7	0.003	0.65	0.0	0.04	15.32	0.00	2.119	10.18	4.13	3.6	96.4	0.1	-0.39	0.69	0.75	0.84	1.91	13524	1832	8	0	4	0	0	logfile
✔	7Xo2	33334	2024-02-13	2022-04-30	3.0	2.83	2.60	2.9	0.001	0.38	0.0	0.05	18.12	0.00	2.586	6.10	0.00	5.0	95.0	0.0	-0.89	0.49	0.87	6.67	2.9	0.009	0.69	0.0	0.06	19.10	0.00	2.285	4.76	4.65	9.4	90.6	0.0	-1.72	1.12	0.51	0.89	6.72	2550	372	6	0	0	0	0	logfile
✔	7Xo0	33332	2024-02-13	2022-04-30	3.0	2.48	1.85	3.1	0.001	0.39	0.0	0.05	16.62	0.00	2.280	4.76	0.00	5.0	95.0	0.0	-2.66	0.47	0.87	7.11	3.1	0.005	0.49	0.0	0.05	17.10	0.00	2.237	6.29	2.71	9.2	90.8	0.0	-2.93	0.30	0.47	0.88	6.95	2550	372	6	0	0	0	0	logfile
✔	7Xo4	33336	2024-02-22	2022-04-30	3.24	2.35	3.35	2.1	0.002	0.50	0.0	0.04	11.87	0.00	1.184	7.12	0.00	2.0	98.0	0.0	-2.83	0.52	0.40	1.77	2.1	0.004	0.82	2.0	0.05	14.11	0.00	2.098	9.75	2.87	4.1	95.9	0.0	-0.64	1.06	0.70	0.77	2.06	33410	4252	10	0	41	0	0	logfile
✔	7Xo1	33333	2024-02-13	2022-04-30	3.0	2.71	1.85	3.1	0.002	0.53	0.0	0.05	16.42	0.00	2.269	6.86	0.00	5.0	95.0	0.0	-2.46	0.45	0.86	4.75	3.1	0.007	0.66	0.0	0.05	18.46	0.00	2.280	3.05	1.55	8.3	91.7	0.0	-2.15	0.32	0.44	0.87	5.88	2550	372	6	0	0	0	0	logfile
✔	7XNQ	33323	2024-02-20	2022-04-29	3.52	3.71	3.54	3.6	0.004	0.63	0.0	0.05	14.68	0.00	2.121	11.63	0.49	6.0	93.9	0.1	-2.00	0.75	0.76	1.64	3.6	0.005	0.66	0.0	0.05	14.67	0.00	2.080	11.55	2.18	7.5	92.5	0.0	-1.62	1.18	0.80	0.81	1.69	26463	3267	24	0	69	0	0	logfile
✔	7XNK	33317	2024-02-21	2022-04-29	2.6	3.10	2.61	3.2	0.020	1.10	0.0	0.09	12.81	0.01	2.092	1.62	0.73	3.1	96.9	0.0	-1.76	0.61	0.79	3.72	3.1	0.003	0.66	1.0	0.09	16.92	0.00	2.057	5.97	1.33	1.1	98.9	0.0	2.53	1.06	0.58	0.79	2.97	31500	1968	12	0	8	0	15652	logfile
✔	7ZQB	14869	2024-02-20	2022-04-29	3.88	3.88	3.85	3.8	0.003	0.56	0.0	0.05	13.10	0.00	1.812	10.84	0.03	4.6	95.4	0.0	-1.99	0.83	0.78	1.89	3.8	0.005	0.69	0.0	0.05	15.13	0.00	2.105	15.05	2.86	5.1	94.8	0.0	-1.44	0.84	0.86	0.85	2.08	86580	11109	36	0	0	0	0	logfile
✔	7XNL	33318	2024-02-21	2022-04-29	3.1	3.41	3.13	3.4	0.014	0.99	0.0	0.06	14.78	0.00	2.084	3.23	0.00	3.9	96.1	0.0	-2.27	0.62	0.78	2.85	3.4	0.004	0.56	0.0	0.04	17.09	0.00	2.085	10.61	2.00	1.5	98.5	0.0	1.36	1.54	0.61	0.80	2.94	31688	1968	16	0	12	0	15652	logfile
✔	7XNo	33321	2024-02-16	2022-04-29	2.54	2.96	2.54	2.8	0.002	0.53	0.0	0.04	12.89	0.00	2.215	5.72	0.12	4.5	95.4	0.1	1.92	0.69	0.85	3.07	2.8	0.004	0.56	0.0	0.04	15.12	0.00	2.208	5.78	1.27	5.2	94.7	0.1	1.79	0.27	0.69	0.87	2.94	15888	2085	15	0	3	0	0	logfile
✔	7XNR	33324	2024-02-20	2022-04-29	3.49	3.73	3.52	3.7	0.004	0.63	0.0	0.05	15.33	0.00	2.085	8.92	0.00	7.2	92.8	0.0	-1.28	0.75	0.73	1.89	3.7	0.003	0.63	0.0	0.05	14.72	0.00	2.146	8.21	1.58	6.3	93.7	0.0	-1.08	0.69	0.80	0.84	1.98	26460	3285	21	0	57	0	0	logfile
✔	7ZQ6	14865	2024-02-20	2022-04-29	2.75	3.18	3.04	2.9	0.009	0.93	2.0	0.08	24.80	0.00	2.140	5.42	3.67	5.0	94.8	0.2	-0.70	0.76	0.85	2.90	2.8	0.005	0.58	0.0	0.04	23.70	0.00	2.087	9.38	4.95	4.5	95.5	0.1	0.05	1.20	0.78	0.89	3.22	90507	3091	32	3095	0	0	0	logfile
✘	7ZQ9	14867	2024-02-14	2022-04-29	2.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92130	4713	47	0	397	88	35670	logfile
✘	7ZQC	14870	2024-02-22	2022-04-29	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	82030	4165	39	0	351	621	31531	logfile

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