Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UVV	26817	2024-02-20	2022-05-02	2.5	2.67	—	2.6	0.006	0.65	0.0	0.04	23.03	0.02	1.993	5.08	2.55	2.6	97.2	0.1	0.74	0.91	0.91	3.70	2.6	0.009	0.78	0.0	0.05	22.65	0.01	2.064	4.68	4.52	3.6	96.3	0.1	0.54	0.21	0.92	0.93	3.62	138294	5500	56	4447	3	0	0	logfile
✔	7UVT	26816	2024-02-15	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	24.65	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.72	0.0	0.04	24.99	0.01	1.910	21.92	0.00	0.0	0.0	0.0	—	0.48	0.77	0.77	—	12409	0	1	386	0	0	4149	logfile
✔	7XoU	33359	2024-02-14	2022-05-01	3.2	3.39	3.29	3.4	0.004	0.71	0.0	0.04	13.47	0.00	2.205	11.37	0.11	5.1	94.9	0.0	-3.52	0.56	0.66	1.65	3.5	0.004	0.68	0.0	0.04	16.20	0.00	2.138	14.16	2.34	5.5	94.4	0.1	-0.98	0.59	0.55	0.68	1.38	8247	1043	6	0	1	0	0	logfile
✔	7XoM	33352	2024-02-13	2022-05-01	3.2	3.57	3.19	3.2	0.002	0.49	0.0	0.04	13.30	0.00	2.175	10.99	0.02	0.9	99.1	0.0	2.16	0.87	0.86	1.74	3.2	0.003	0.54	0.0	0.04	15.16	0.00	2.138	12.09	0.99	1.1	98.9	0.0	2.04	1.28	0.88	0.88	1.58	54129	7336	15	0	32	0	0	logfile
✔	7XoP	33355	2024-02-13	2022-05-01	3.2	3.56	3.01	3.4	0.003	0.49	0.0	0.04	11.43	0.00	2.190	8.30	0.00	1.1	98.9	0.0	2.31	0.56	0.86	3.54	3.4	0.005	0.63	0.0	0.04	13.18	0.00	2.180	10.73	0.25	1.1	98.9	0.0	1.87	0.40	0.59	0.89	2.88	3855	524	1	0	0	0	0	logfile
✔	7XoJ	33349	2024-02-13	2022-05-01	2.8	3.84	2.82	3.2	0.003	0.48	0.0	0.04	13.28	0.00	2.189	10.04	0.00	0.9	99.1	0.0	2.28	0.88	0.87	2.08	3.2	0.003	0.56	0.0	0.04	14.86	0.00	2.115	11.83	0.57	1.0	99.0	0.0	2.16	0.27	0.88	0.88	1.98	53970	7336	14	0	0	0	0	logfile
✔	7XoQ	33356	2024-02-13	2022-05-01	3.3	3.58	3.06	3.4	0.003	0.54	0.0	0.04	11.31	0.00	2.277	8.56	0.00	1.0	99.0	0.0	2.13	0.56	0.85	2.21	3.4	0.002	0.52	0.0	0.04	14.45	0.00	2.347	8.04	1.24	1.0	99.0	0.0	2.53	0.38	0.58	0.87	1.52	3855	524	1	0	0	0	0	logfile
✔	7XoH	33348	2024-02-15	2022-05-01	3.6	3.64	3.56	3.6	0.004	0.58	0.0	0.04	12.55	0.00	2.005	32.89	4.34	10.6	89.3	0.1	-4.16	0.72	0.83	2.38	3.6	0.003	0.69	0.0	0.04	14.87	0.00	2.119	9.55	3.56	7.0	93.0	0.0	-1.53	0.54	0.73	0.83	2.39	13524	1832	8	0	4	0	0	logfile
✔	7XoW	33361	2024-02-14	2022-05-01	3.1	3.48	3.17	3.6	0.005	0.86	0.0	0.05	13.16	0.01	2.198	9.68	0.11	4.7	95.3	0.0	-2.76	0.57	0.74	2.81	3.6	0.003	0.66	0.0	0.04	15.36	0.00	2.167	7.97	2.80	5.3	94.7	0.0	-0.12	1.13	0.54	0.73	2.01	8566	1122	6	0	0	0	0	logfile
✔	7XoD	33345	2024-02-23	2022-05-01	3.27	2.34	3.34	2.1	0.003	0.60	1.0	0.05	13.94	0.00	1.716	4.08	0.16	4.8	95.2	0.0	-2.45	0.68	0.69	2.09	2.1	0.009	1.01	1.0	0.05	15.96	0.01	1.914	12.40	3.81	6.8	93.2	0.0	-1.16	1.01	0.72	0.77	2.43	36173	4742	17	0	39	0	0	logfile
✔	7Xo8	33340	2024-02-23	2022-05-01	3.48	2.53	3.64	2.1	0.004	0.71	11.0	0.07	13.52	0.01	1.275	7.97	0.45	3.6	96.3	0.2	-2.72	0.58	0.47	0.91	2.1	0.003	0.70	0.0	0.04	15.82	0.00	2.110	11.24	2.59	3.9	96.0	0.0	-0.33	1.21	0.69	0.75	1.52	39126	4863	12	0	45	0	0	logfile
✔	7XoS	33358	2024-02-13	2022-05-01	3.2	3.54	3.05	3.3	0.003	0.58	0.0	0.04	13.12	0.00	2.109	10.85	0.00	1.5	98.5	0.0	1.37	0.54	0.84	2.95	3.3	0.002	0.62	0.0	0.04	15.45	0.00	2.186	11.62	1.73	1.0	99.0	0.0	1.93	0.42	0.55	0.86	2.24	3855	524	1	0	0	0	0	logfile
✔	7Xo6	33338	2024-02-13	2022-05-01	2.6	2.25	3.18	2.1	0.003	0.56	0.0	0.08	13.23	0.01	2.075	2.62	0.00	1.3	98.7	0.0	-1.43	0.72	0.68	2.45	2.1	0.003	0.59	0.0	0.04	17.05	0.00	2.100	8.66	1.46	2.2	97.8	0.0	0.69	1.56	0.78	0.82	3.13	6440	786	5	0	5	0	0	logfile
✔	7XoB	33343	2024-02-22	2022-05-01	3.3	2.37	3.35	2.1	0.005	0.92	12.0	0.08	13.73	0.01	1.329	8.08	0.57	4.9	95.0	0.2	-3.07	0.57	0.43	1.44	2.1	0.004	0.76	0.0	0.05	16.10	0.00	2.121	12.61	2.88	5.0	95.0	0.0	-0.96	1.24	0.74	0.78	2.17	34108	4260	10	0	39	0	0	logfile
✔	7XoV	33360	2024-02-14	2022-05-01	3.0	3.23	3.00	6.0	0.019	1.84	0.0	0.09	10.85	0.02	2.322	6.84	0.90	3.0	96.9	0.1	0.50	0.14	0.02	0.62	3.3	0.003	0.73	0.0	0.04	15.48	0.00	2.051	10.57	1.79	3.8	96.1	0.1	0.33	1.71	0.48	0.61	1.14	8218	1036	5	0	1	1	0	logfile
✔	7XoN	33353	2024-02-13	2022-05-01	3.1	3.66	2.94	3.3	0.002	0.47	0.0	0.04	12.44	0.00	2.325	9.45	0.00	1.5	98.5	0.0	2.61	0.57	0.88	2.21	3.3	0.004	0.52	0.0	0.04	13.80	0.00	2.294	9.32	1.24	1.3	98.7	0.0	2.64	0.41	0.59	0.91	2.40	3855	524	1	0	0	0	0	logfile
✘	7XoL	33351	2024-02-13	2022-05-01	3.26	4.02	3.37	3.4	0.002	0.49	0.0	0.04	13.50	0.00	2.224	10.95	0.00	0.5	99.5	0.0	2.40	0.89	0.88	1.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53970	7336	14	0	0	0	0	logfile
✔	7Xo9	33341	2024-02-13	2022-05-01	3.0	2.26	3.23	3.1	0.002	0.47	0.0	0.06	13.06	0.01	2.059	3.31	0.00	2.0	98.0	0.0	-1.79	0.74	0.73	2.69	2.0	0.004	0.66	0.0	0.04	17.14	0.00	2.046	10.73	2.01	3.5	96.5	0.0	0.33	0.65	0.77	0.80	3.03	6483	793	2	0	5	0	0	logfile
✔	7Xo7	33339	2024-02-22	2022-05-01	3.38	2.45	3.48	2.1	0.002	0.45	0.0	0.04	8.03	0.00	2.025	7.24	0.08	2.0	98.0	0.0	-3.21	0.62	0.55	1.27	2.1	0.004	0.66	0.0	0.04	13.23	0.00	2.009	9.67	2.54	4.0	96.0	0.0	-0.29	0.67	0.70	0.76	1.66	34209	4267	10	0	43	0	0	logfile
✔	7XoC	33344	2024-02-13	2022-05-01	3.0	2.28	3.19	2.1	0.002	0.49	0.0	0.04	10.96	0.00	2.149	5.34	0.00	2.1	97.9	0.0	-2.11	0.73	0.69	2.72	2.0	0.003	0.66	0.0	0.04	15.64	0.00	2.076	8.36	2.20	3.1	96.9	0.0	0.97	1.37	0.76	0.82	3.23	6432	786	5	0	5	0	0	logfile

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