Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XMG	33296	2024-02-15	2022-04-25	3.09	3.36	3.11	3.4	0.006	0.85	1.0	0.05	16.61	0.01	2.017	20.33	4.46	7.3	92.4	0.3	-2.84	0.50	0.67	1.81	3.4	0.003	0.66	0.0	0.04	17.18	0.00	2.121	12.24	3.36	5.8	94.2	0.0	-0.41	1.16	0.55	0.75	1.41	11692	1431	7	0	10	0	0	logfile
✔	7XMF	33295	2024-02-15	2022-04-25	3.07	3.32	3.09	3.3	0.008	0.87	3.0	0.05	16.55	0.01	1.953	16.26	3.37	5.6	94.1	0.4	-2.41	0.55	0.73	2.36	3.3	0.004	0.90	0.0	0.04	17.29	0.00	2.098	10.05	3.21	5.1	94.8	0.1	0.12	0.54	0.61	0.81	2.11	11709	1433	7	0	11	0	0	logfile
✔	7Zo9	14844	2024-02-14	2022-04-24	3.5	3.84	3.61	3.9	0.003	0.63	0.0	0.04	15.33	0.00	2.164	10.83	0.00	7.1	92.7	0.2	0.40	0.68	0.79	1.52	3.9	0.003	0.66	0.0	0.04	16.42	0.00	2.262	10.09	0.97	6.0	93.9	0.2	0.52	1.09	0.67	0.78	1.69	8730	1112	4	0	4	0	0	logfile
✔	7Zo8	14843	2024-02-14	2022-04-24	3.6	3.59	3.40	3.6	0.004	0.70	0.0	0.04	16.85	0.00	2.257	8.47	0.42	4.8	94.9	0.4	1.72	0.66	0.80	1.67	3.6	0.004	0.58	0.0	0.04	16.86	0.00	2.199	7.47	1.80	4.2	95.4	0.4	1.83	0.31	0.66	0.78	1.62	8952	1140	4	0	2	0	0	logfile
✔	7ZoA	14845	2024-02-14	2022-04-24	4.0	4.31	4.04	4.2	0.004	0.81	1.0	0.07	24.01	0.00	2.176	9.69	0.11	3.3	96.4	0.4	0.93	0.64	0.75	—	4.2	0.003	0.74	0.0	0.04	18.36	0.00	2.134	10.90	3.20	3.6	96.1	0.3	1.55	0.79	0.69	0.80	—	9042	1140	3	0	18	0	0	logfile
✔	7XM1	33289	2024-02-14	2022-04-24	3.96	3.41	3.91	4.0	0.002	0.43	0.0	0.04	15.16	0.00	2.503	2.22	0.00	3.3	96.7	0.0	2.33	0.73	0.81	1.85	4.0	0.004	0.55	0.0	0.04	18.98	0.00	2.236	4.12	2.26	3.9	96.1	0.0	2.54	0.65	0.75	0.84	1.79	60240	7380	101	0	60	0	0	logfile
✔	7US9	26729	2024-02-13	2022-04-23	3.8	3.84	3.64	3.9	0.015	1.58	0.0	0.11	7.49	0.01	2.489	3.45	0.00	2.3	97.7	0.0	1.07	0.59	0.74	4.43	3.8	0.003	0.78	0.0	0.11	11.81	0.01	2.146	5.42	1.23	1.6	98.4	0.0	0.51	1.45	0.60	0.77	2.97	1127	145	3	0	4	0	0	logfile
✔	7USA	26730	2024-02-19	2022-04-23	2.8	2.94	2.77	3.0	0.015	1.60	18.0	0.13	12.19	0.01	1.968	1.95	0.04	3.5	96.2	0.3	0.09	0.75	0.85	4.68	3.0	0.003	0.61	0.0	0.05	12.96	0.00	2.271	2.93	1.92	2.3	97.6	0.1	0.61	1.76	0.75	0.91	4.18	24307	3181	33	0	90	0	0	logfile
✔	7USB	26731	2024-02-13	2022-04-23	3.1	3.28	3.18	3.3	0.013	1.72	0.0	0.11	10.32	0.01	2.590	1.61	1.39	5.5	94.5	0.0	-0.28	0.59	0.76	5.40	3.3	0.003	0.60	0.0	0.05	12.35	0.00	2.340	6.42	2.08	3.0	97.0	0.0	-1.02	1.02	0.59	0.83	5.54	1661	213	3	0	5	0	0	logfile
✔	7ZNY	14842	2024-02-16	2022-04-23	3.26	3.51	3.24	3.5	0.003	0.63	0.0	0.05	12.60	0.00	2.233	8.53	0.00	4.7	95.3	0.0	-1.12	0.74	0.76	2.30	3.5	0.003	0.78	0.0	0.05	13.99	0.00	2.213	9.07	3.16	5.0	95.0	0.0	-0.77	0.32	0.75	0.78	2.35	14763	1879	4	0	0	0	0	logfile
✔	7US6	26727	2024-02-19	2022-04-23	3.8	3.39	3.16	3.4	0.015	1.49	12.0	0.11	12.01	0.01	2.101	1.86	0.45	2.7	96.9	0.4	0.23	0.72	0.84	5.29	3.4	0.003	0.58	0.0	0.04	12.19	0.00	2.165	3.27	2.37	1.9	98.0	0.1	0.56	0.99	0.74	0.85	4.35	23747	3159	32	0	107	0	0	logfile
✔	7US2	26722	2024-02-17	2022-04-22	2.76	3.74	2.77	3.1	0.009	1.13	0.0	0.05	11.27	0.00	1.974	3.11	0.56	4.8	95.1	0.1	-2.67	0.85	0.81	4.17	3.1	0.002	0.57	0.0	0.04	12.88	0.00	1.951	7.46	0.33	1.5	98.5	0.0	1.22	1.30	0.86	0.86	3.52	17200	2082	13	0	26	0	0	logfile
✔	7XLT	33286	2024-02-13	2022-04-22	4.4	4.55	4.45	4.3	0.004	0.89	0.0	0.05	18.80	0.01	2.288	8.02	0.79	6.8	93.2	0.0	-2.19	0.68	0.59	—	4.3	0.004	0.72	0.0	0.04	16.83	0.00	2.086	24.40	0.00	7.7	92.3	0.0	-2.41	1.74	0.74	0.72	—	4985	431	4	80	0	0	0	logfile
✔	7XLQ	33285	2024-02-17	2022-04-22	3.1	3.36	3.17	3.4	0.006	0.85	0.0	0.05	16.12	0.01	2.117	12.12	0.33	8.0	91.9	0.1	-3.52	0.65	0.81	3.29	3.4	0.003	0.63	0.0	0.04	16.01	0.00	2.176	8.23	2.11	6.9	93.0	0.0	-0.52	1.14	0.65	0.82	2.30	20132	2436	8	0	33	0	0	logfile
✔	7XLM	33284	2024-02-14	2022-04-22	3.73	4.01	3.65	4.0	0.008	1.09	0.0	0.06	15.99	0.01	2.287	4.87	0.97	12.7	87.1	0.3	-5.14	0.64	0.83	1.81	4.0	0.002	0.69	0.0	0.04	17.49	0.00	2.274	6.29	4.46	10.1	89.9	0.0	-1.26	0.44	0.63	0.82	2.26	9268	1190	4	0	2	0	0	logfile
✔	7ZNU	14814	2024-02-14	2022-04-22	4.0	4.28	4.04	4.1	0.003	0.64	0.0	0.04	15.16	0.00	2.173	9.52	0.00	3.2	96.7	0.2	1.40	0.69	0.74	—	4.1	0.003	0.81	0.0	0.04	17.08	0.00	2.208	14.54	2.27	5.1	94.8	0.1	1.16	0.97	0.71	0.78	—	8730	1112	4	0	4	0	0	logfile
✔	7URV	26719	2024-02-13	2022-04-22	3.05	3.32	2.93	3.5	0.005	0.97	1.0	0.06	14.08	0.01	2.300	11.25	0.78	6.9	92.8	0.2	-1.04	0.64	0.78	3.35	3.5	0.004	0.66	0.0	0.04	15.59	0.01	2.263	11.98	2.59	7.2	92.8	0.0	-0.76	0.38	0.63	0.80	3.27	3460	445	2	0	0	0	0	logfile
✔	7URi	26713	2024-02-13	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	30.06	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.007	1.42	0.0	0.07	28.72	0.01	2.070	25.42	0.00	0.0	0.0	0.0	—	2.08	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	7URR	26717	2024-02-23	2022-04-22	4.7	4.27	—	4.2	0.006	0.96	0.0	0.04	18.75	0.01	2.096	4.95	0.23	5.9	94.0	0.1	-1.06	0.44	0.63	—	4.2	0.002	0.54	0.0	0.03	14.83	0.00	1.938	11.11	0.00	5.6	94.3	0.1	0.27	0.78	0.52	0.70	—	38168	2345	2	0	0	0	19331	logfile
✔	7URT	26718	2024-02-13	2022-04-22	2.39	2.51	2.52	2.5	0.008	0.96	0.0	0.07	13.99	0.01	0.512	6.62	1.60	0.9	99.1	0.0	1.22	0.71	0.82	4.21	2.5	0.037	3.41	17.0	0.29	25.51	0.01	0.387	10.75	2.97	1.5	98.5	0.0	1.74	1.11	0.69	0.81	2.97	107880	13260	60	0	120	0	0	logfile

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