Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7URM	26714	2024-02-13	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	28.63	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.15	0.0	0.05	27.88	0.01	2.001	29.60	0.00	0.0	0.0	0.0	—	1.67	0.15	0.53	—	1905	0	1	90	0	0	0	logfile
✔	7ZNN	14812	2024-02-16	2022-04-21	4.8	7.93	6.02	4.7	0.003	0.80	0.0	0.04	14.16	0.00	2.316	6.53	0.93	7.2	92.6	0.2	-4.19	0.87	0.70	—	4.7	0.003	0.70	0.0	0.04	13.34	0.00	2.120	24.30	0.00	5.1	94.9	0.1	-1.32	2.02	0.88	0.71	—	14606	1814	4	0	1	0	0	logfile
✔	7ZNQ	14813	2024-02-15	2022-04-21	3.04	3.71	3.05	3.5	0.004	0.90	1.0	0.05	15.84	0.01	1.840	4.48	0.22	6.0	93.7	0.3	-2.57	0.75	0.88	2.06	3.5	0.007	0.70	0.0	0.05	16.20	0.00	1.924	8.49	3.26	5.9	93.7	0.4	0.18	0.89	0.75	0.89	2.17	12862	1670	8	0	3	0	0	logfile
✘	7ZNL	14808	2024-02-20	2022-04-21	3.45	3.67	3.55	3.4	0.005	0.78	0.0	0.04	11.78	0.01	2.171	7.60	6.04	6.6	93.1	0.3	-2.22	0.37	0.21	0.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	84821	11173	28	0	0	0	0	logfile
✔	7XL6	33273	2024-02-18	2022-04-21	3.25	3.46	3.22	3.5	0.002	0.58	0.0	0.04	17.81	0.00	2.111	7.85	0.13	6.9	93.1	0.0	-1.13	0.66	0.78	1.56	3.5	0.003	0.59	0.0	0.04	18.17	0.00	2.187	7.47	2.97	6.8	93.2	0.0	-0.82	0.80	0.67	0.83	2.16	20783	2576	7	0	0	0	0	logfile
✔	7UR6	26706	2024-02-18	2022-04-21	3.46	3.95	3.52	3.8	0.005	0.81	0.0	0.06	18.66	0.00	2.075	3.15	0.23	2.9	97.1	0.0	-0.21	0.81	0.84	2.48	3.8	0.005	0.73	0.0	0.05	15.23	0.00	2.150	8.75	2.04	4.9	95.1	0.0	-0.22	0.57	0.80	0.85	2.59	21633	2466	60	0	180	0	0	logfile
✘	7XL3	33271	2024-02-19	2022-04-21	3.13	3.20	—	3.2	0.002	0.39	0.0	0.04	12.03	0.00	2.263	4.77	1.08	2.9	97.1	0.0	-4.73	0.73	0.79	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25700	3480	8	0	3	0	0	logfile
✔	7URG	26712	2024-02-13	2022-04-21	3.46	3.69	3.49	3.7	0.002	0.50	0.0	0.04	15.44	0.00	2.229	4.69	0.00	3.5	96.5	0.0	0.73	0.69	0.75	2.59	3.7	0.003	0.57	0.0	0.04	16.94	0.00	2.222	5.74	3.47	4.8	95.2	0.0	0.12	0.52	0.75	0.79	2.27	6260	802	4	0	2	0	0	logfile
✔	7URE	26710	2024-02-13	2022-04-21	3.19	3.51	3.25	3.4	0.017	0.78	0.0	0.78	25.75	0.00	2.118	9.65	0.00	5.7	94.3	0.0	-2.27	0.60	0.85	3.70	3.4	0.004	1.14	0.0	0.12	19.97	0.00	2.155	6.68	2.24	6.2	93.8	0.0	0.38	0.92	0.63	0.87	3.11	5450	678	6	0	3	0	0	logfile
✔	7XL8	33274	2024-02-17	2022-04-21	3.0	3.22	3.00	3.2	0.010	1.31	12.0	0.07	19.59	0.01	2.249	9.41	1.35	1.3	98.7	0.0	-1.48	0.57	0.79	2.25	3.2	0.002	0.57	0.0	0.04	17.28	0.00	2.366	5.89	2.82	2.4	97.6	0.0	1.50	0.99	0.59	0.81	1.87	16920	1956	24	0	84	0	0	logfile
✘	7ZNK	14804	2024-02-20	2022-04-21	3.9	6.01	—	7.4	0.006	0.88	2.0	0.05	11.88	0.01	1.707	9.96	5.83	6.4	93.3	0.3	-2.12	0.73	0.46	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	88261	11599	32	6	0	0	0	logfile
✘	7XL4	33272	2024-02-19	2022-04-21	3.86	3.92	—	3.8	0.001	0.36	0.0	0.04	9.42	0.00	2.274	4.13	0.00	1.4	98.6	0.0	-4.82	0.78	0.75	1.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24560	3479	8	0	3	0	0	logfile
✔	7ZNJ	14803	2024-02-22	2022-04-21	2.4	2.51	2.47	2.5	0.004	0.82	0.0	0.05	17.78	0.01	2.092	3.02	0.83	1.1	98.9	0.0	-1.45	0.70	0.77	3.99	2.5	0.004	0.68	0.0	0.05	17.88	0.00	2.138	5.36	2.88	1.9	98.1	0.0	0.94	1.10	0.70	0.79	3.84	35088	4242	36	36	12	0	0	logfile
✔	7UR4	26704	2024-02-23	2022-04-21	3.34	4.06	3.35	3.8	0.006	0.63	0.0	0.05	14.50	0.01	2.034	1.55	0.42	3.8	96.2	0.0	-0.89	0.86	0.85	3.07	3.8	0.004	0.56	0.0	0.04	13.44	0.00	1.984	6.12	1.02	3.4	96.6	0.0	0.08	1.43	0.84	0.83	2.66	30066	1974	15	0	15	0	14784	logfile
✔	7UR5	26705	2024-02-13	2022-04-21	2.6	2.89	2.82	2.9	0.008	1.48	0.0	0.11	29.59	0.01	2.204	2.44	0.00	0.0	0.0	0.0	—	0.05	0.58	—	2.9	0.005	0.89	0.0	0.05	27.26	0.01	2.007	16.72	0.00	0.0	0.0	0.0	—	1.85	0.08	0.67	—	5709	0	3	270	0	0	0	logfile
✔	7URD	26709	2024-02-13	2022-04-21	2.92	3.41	2.97	3.3	0.017	0.95	0.0	0.83	26.25	0.00	2.177	10.24	0.00	5.0	95.0	0.0	-2.44	0.59	0.86	3.86	3.3	0.002	1.08	0.0	0.12	19.85	0.00	2.272	6.22	1.56	3.6	96.4	0.0	0.73	0.93	0.55	0.85	3.16	5534	678	5	0	6	0	0	logfile
✘	7URC	26708	2024-02-13	2022-04-21	3.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5561	658	4	0	12	0	0	logfile
✔	7XLB	33276	2024-02-17	2022-04-21	3.44	3.67	3.47	3.7	0.003	0.64	0.0	0.04	19.23	0.01	2.236	8.13	0.19	7.7	92.3	0.0	-3.68	0.63	0.71	0.83	3.7	0.003	0.67	0.0	0.04	19.76	0.01	2.222	7.15	6.07	8.3	91.7	0.0	-3.13	0.27	0.64	0.72	0.35	19138	2352	7	0	0	0	0	logfile
✔	7XKP	33259	2024-02-19	2022-04-20	3.0	3.46	3.07	3.2	0.002	0.48	0.0	0.04	13.19	0.00	2.089	3.88	0.00	2.4	97.6	0.0	1.63	0.84	0.90	3.37	3.2	0.002	0.50	0.0	0.04	14.76	0.00	2.081	4.80	0.90	2.4	97.6	0.0	1.63	0.29	0.84	0.91	2.94	24105	3128	8	0	2	0	0	logfile
✔	7XKQ	33264	2024-02-19	2022-04-20	3.3	3.61	3.27	3.3	0.003	0.50	0.0	0.04	14.15	0.00	1.967	4.96	0.00	2.0	98.0	0.0	1.22	0.86	0.89	2.81	3.3	0.003	0.49	0.0	0.04	15.10	0.00	1.949	6.02	1.01	2.3	97.6	0.0	1.36	0.39	0.87	0.91	2.41	25299	3259	15	0	13	0	0	logfile

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