Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UMM	26605	2024-02-17	2022-04-07	3.36	3.08	—	3.0	0.014	0.82	0.0	0.06	13.08	0.01	2.096	9.98	0.45	7.6	92.4	0.0	-2.00	0.69	0.85	4.23	3.0	0.004	0.64	0.0	0.04	14.90	0.00	2.099	10.23	1.51	4.0	96.0	0.0	-0.04	0.48	0.70	0.87	3.71	18147	2322	15	0	12	0	0	logfile
✔	7XGY	33189	2024-02-13	2022-04-07	3.5	3.46	3.56	3.3	0.008	1.16	0.0	0.06	16.48	0.01	2.307	9.06	2.17	6.4	93.6	0.0	-3.05	0.78	0.73	2.38	3.3	0.004	0.81	0.0	0.05	18.06	0.01	2.027	19.11	5.21	5.5	94.5	0.0	0.99	1.11	0.78	0.73	1.22	4555	574	8	0	4	0	0	logfile
✔	7UMN	26606	2024-02-15	2022-04-07	3.6	3.47	—	3.5	0.011	0.89	0.0	0.06	12.51	0.01	2.206	15.23	0.22	7.9	92.1	0.0	-2.39	0.69	0.76	3.01	3.5	0.008	0.86	0.0	0.05	15.25	0.01	2.168	19.19	2.29	8.0	92.0	0.0	-1.49	0.56	0.70	0.77	2.39	12375	1581	9	0	0	0	0	logfile
✔	7UM7	26599	2024-02-14	2022-04-06	2.75	2.13	2.74	1.9	0.002	0.48	0.0	0.04	13.05	0.01	2.220	2.88	0.00	2.8	97.2	0.0	-0.25	0.81	0.80	4.23	1.9	0.005	0.62	0.0	0.04	15.06	0.00	2.215	3.70	3.00	4.0	96.0	0.0	0.56	0.33	0.83	0.83	4.01	8165	1089	6	0	1	0	0	logfile
✘	7XGR	33187	2024-02-13	2022-04-06	2.6	3.38	2.47	3.2	0.004	0.71	0.0	0.04	18.88	0.00	2.259	8.70	2.17	6.3	93.7	0.0	-0.28	0.52	0.75	2.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4340	546	1	0	0	0	0	logfile
✔	7ZHJ	14733	2024-02-18	2022-04-06	3.53	3.10	3.39	3.3	0.003	0.55	0.0	0.04	13.02	0.00	2.151	8.47	0.04	3.6	96.4	0.0	-1.71	0.73	0.78	2.05	3.3	0.004	0.63	1.0	0.05	15.68	0.00	1.882	8.92	2.56	2.9	97.1	0.0	-1.24	1.53	0.74	0.82	2.44	74346	9528	33	0	0	0	0	logfile
✔	7UM6	26598	2024-02-14	2022-04-06	2.79	2.13	2.81	1.9	0.004	0.58	0.0	0.04	11.09	0.00	2.359	2.38	0.12	3.8	96.2	0.0	-0.54	0.82	0.81	4.30	1.9	0.003	0.60	0.0	0.04	14.17	0.00	2.241	3.20	3.26	3.4	96.6	0.0	0.53	0.37	0.83	0.83	3.41	8175	1094	6	0	1	0	0	logfile
✔	7ZHG	14731	2024-02-15	2022-04-06	2.25	2.12	2.20	2.2	0.016	0.85	3.0	0.04	21.53	0.06	1.889	2.84	1.41	3.3	96.7	0.0	0.18	0.70	0.86	5.31	2.2	0.003	1.19	1.0	0.04	22.50	0.01	1.852	3.49	1.60	2.9	97.1	0.0	0.47	0.38	0.72	0.88	4.99	64278	3601	69	1533	96	2083	0	logfile
✔	7ZH5	14724	2024-02-18	2022-04-05	3.3	2.88	3.25	3.0	0.004	0.60	0.0	0.05	14.19	0.00	2.018	3.80	0.22	8.8	91.0	0.1	-2.46	0.70	0.75	2.41	2.9	0.005	0.68	0.0	0.05	15.34	0.00	2.188	5.94	2.38	9.6	90.3	0.1	-1.50	0.31	0.71	0.77	2.20	21592	2792	6	0	23	0	0	logfile
✔	7ZH2	14718	2024-02-19	2022-04-05	2.71	2.24	2.66	2.5	0.003	0.62	0.0	0.04	13.22	0.00	2.038	2.41	0.30	3.3	96.6	0.1	-0.81	0.73	0.81	3.90	2.5	0.003	0.59	0.0	0.04	15.19	0.00	2.164	3.10	2.23	4.4	95.6	0.0	-0.63	0.37	0.74	0.83	4.11	24419	3060	9	0	36	0	0	logfile
✔	7ZH6	14725	2024-02-13	2022-04-05	3.67	4.10	0.95	4.2	0.006	0.90	0.0	0.06	15.91	0.01	1.607	26.36	1.26	6.4	93.6	0.0	0.99	0.54	0.73	1.36	4.2	0.004	0.71	0.0	0.04	16.90	0.00	2.203	15.14	6.80	6.4	93.6	0.0	1.06	1.11	0.54	0.75	1.16	3771	478	1	0	1	0	0	logfile
✔	7ZH3	14720	2024-02-13	2022-04-05	2.5	2.66	2.45	2.7	0.010	0.84	0.0	0.06	13.33	0.01	2.209	7.02	0.00	3.8	96.2	0.0	-1.40	0.59	0.87	4.43	2.7	0.003	0.54	0.0	0.04	16.15	0.00	2.226	6.41	3.21	2.3	97.7	0.0	1.14	1.10	0.55	0.86	3.85	3301	407	4	0	1	38	0	logfile
✔	7ZH4	14721	2024-02-13	2022-04-05	2.49	2.65	2.46	2.6	0.005	0.88	0.0	0.04	14.07	0.00	2.231	4.63	0.00	2.3	97.7	0.0	-0.97	0.56	0.86	4.93	2.6	0.003	0.50	0.0	0.04	16.83	0.00	2.244	4.63	1.81	1.4	98.6	0.0	1.09	2.14	0.52	0.85	3.68	2957	362	4	0	2	39	0	logfile
✔	7ZH1	14717	2024-02-19	2022-04-05	2.48	2.28	2.44	2.3	0.007	1.14	0.0	0.07	16.42	0.02	2.120	5.11	2.38	4.3	95.2	0.5	-0.18	0.71	0.79	3.85	2.3	0.005	0.75	0.0	0.05	16.61	0.01	2.206	3.42	2.49	4.7	95.3	0.1	-0.53	0.50	0.74	0.84	4.24	24501	3060	9	0	39	0	0	logfile
✔	7ZHA	14728	2024-02-13	2022-04-05	3.55	3.96	3.62	4.0	0.005	0.73	0.0	0.04	14.09	0.01	2.352	15.98	0.50	4.8	95.2	0.0	1.39	0.58	0.72	1.74	4.0	0.003	0.71	0.0	0.04	16.49	0.00	2.158	14.82	4.47	5.2	94.6	0.2	1.37	0.83	0.58	0.73	1.67	3836	487	1	0	1	0	0	logfile
✔	7ZH0	14716	2024-02-13	2022-04-05	3.2	3.63	3.07	3.5	0.004	0.72	0.0	0.04	13.97	0.01	2.191	14.27	0.24	6.0	94.0	0.0	1.08	0.65	0.75	3.58	3.5	0.004	0.66	0.0	0.04	16.36	0.00	2.216	13.25	4.65	5.7	94.3	0.0	1.15	0.48	0.67	0.77	2.86	3869	495	1	0	0	0	0	logfile
✔	7ZH7	14726	2024-02-15	2022-04-05	3.3	3.52	2.56	3.5	0.003	0.74	0.0	0.05	11.41	0.01	2.267	3.63	0.00	2.7	97.3	0.0	-4.42	0.36	0.78	5.27	3.5	0.006	0.69	0.0	0.05	14.87	0.00	2.025	9.16	0.73	13.1	86.9	0.0	-4.46	1.50	0.39	0.82	5.45	11520	760	10	0	0	0	5390	logfile
✔	7ULW	26595	2024-02-17	2022-04-05	3.1	3.61	3.28	3.5	0.002	0.41	0.0	0.04	13.47	0.00	2.235	2.87	0.00	1.3	98.7	0.0	2.53	0.53	0.83	2.45	3.4	0.003	0.57	0.0	0.04	16.67	0.00	2.122	7.18	2.10	2.5	97.5	0.0	1.73	0.73	0.54	0.85	2.63	18766	2400	6	0	0	0	0	logfile
✔	7ZGU	14713	2024-02-23	2022-04-04	3.4	2.24	3.39	2.1	0.003	0.68	0.0	0.04	14.94	0.00	2.201	11.55	0.55	6.2	93.8	0.0	-0.91	0.69	0.68	1.58	1.6	0.003	0.71	0.0	0.04	17.43	0.00	2.124	12.67	3.05	6.3	93.7	0.0	-0.94	0.97	0.71	0.72	1.52	38940	4854	12	0	6	0	0	logfile
✔	7XGD	33186	2024-02-19	2022-04-04	4.0	4.65	4.34	4.3	0.003	0.71	1.0	0.05	13.04	0.01	1.886	25.05	0.00	12.5	87.1	0.4	-2.75	0.80	0.65	—	4.3	0.003	0.63	1.0	0.05	14.77	0.00	1.959	23.43	1.41	11.9	87.7	0.4	-2.71	1.17	0.81	0.66	—	25488	1672	4	0	4	0	12030	logfile

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