Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7X57	33010	2024-02-14	2022-03-04	3.63	3.95	—	3.8	0.003	0.63	0.0	0.03	28.74	0.01	2.286	9.90	0.20	1.4	98.6	0.0	0.39	0.82	0.76	1.31	3.8	0.004	0.63	0.0	0.03	29.63	0.00	2.279	12.74	2.57	2.4	97.6	0.0	2.83	0.69	0.83	0.79	1.28	9767	595	10	242	0	0	0	logfile
✔	7X58	33011	2024-02-14	2022-03-04	3.93	4.15	—	3.9	0.003	0.56	0.0	0.03	27.06	0.00	2.221	7.16	0.00	0.9	99.1	0.0	0.68	0.86	0.80	1.58	3.9	0.004	0.66	0.0	0.03	29.26	0.00	2.197	13.47	4.74	2.8	97.2	0.0	2.97	0.90	0.88	0.83	0.65	9775	596	10	242	0	0	0	logfile
✔	7X5A	33013	2024-02-15	2022-03-04	3.01	3.27	3.09	3.2	0.003	0.53	0.0	0.04	20.33	0.00	2.182	3.74	0.00	1.7	98.3	0.0	0.22	0.70	0.81	3.38	3.2	0.003	0.52	0.0	0.04	21.91	0.00	2.252	7.47	2.26	1.1	98.9	0.0	0.32	0.36	0.73	0.87	3.23	10686	1083	12	104	0	0	0	logfile
✔	7Z4L	14501	2024-02-16	2022-03-04	2.54	3.13	2.76	3.0	0.005	0.53	0.0	0.04	17.44	0.00	1.780	8.74	2.83	2.3	97.7	0.0	0.38	0.80	0.88	4.10	3.0	0.003	0.52	0.0	0.04	18.55	0.00	1.892	9.88	1.66	2.3	97.7	0.0	1.12	0.51	0.78	0.87	3.70	13823	1337	6	136	3	6	0	logfile
✔	7U67	26362	2024-02-25	2022-03-03	2.5	2.10	2.53	1.8	0.005	0.75	0.0	0.05	17.77	0.00	2.161	3.24	0.91	2.4	97.6	0.0	-0.22	0.79	0.79	3.83	1.8	0.002	0.52	0.0	0.04	17.74	0.00	2.071	3.64	1.67	2.3	97.7	0.0	1.16	0.39	0.83	0.83	3.33	26778	3360	18	0	12	0	0	logfile
✔	7U6E	26364	2024-02-13	2022-03-03	3.0	3.18	2.99	3.1	0.008	0.91	0.0	0.06	14.19	0.01	2.171	5.91	1.82	4.6	95.3	0.1	-2.19	0.79	0.74	2.42	3.1	0.003	0.73	0.0	0.05	16.47	0.00	2.155	14.61	2.72	4.3	95.7	0.0	-1.76	1.66	0.81	0.77	2.03	8004	974	9	0	10	0	0	logfile
✔	7Z4H	14497	2024-02-16	2022-03-03	3.49	4.59	3.66	3.8	0.003	0.45	0.0	0.03	16.01	0.00	2.043	9.94	1.25	2.0	98.0	0.0	1.67	0.90	0.83	1.71	3.8	0.002	0.51	0.0	0.03	17.25	0.00	2.170	12.24	1.42	2.3	97.7	0.0	1.56	1.20	0.91	0.85	1.74	13900	1334	4	142	0	0	0	logfile
✔	7Z4J	14499	2024-02-16	2022-03-03	2.99	3.74	3.13	3.4	0.005	0.48	0.0	0.04	16.16	0.00	1.860	7.21	2.15	2.2	97.8	0.0	0.96	0.85	0.87	2.76	3.4	0.003	0.46	0.0	0.03	16.97	0.00	1.893	7.66	1.41	2.5	97.5	0.0	1.39	0.80	0.85	0.86	2.64	13948	1345	10	142	4	8	0	logfile
✔	7Z3Z	14481	2024-02-25	2022-03-03	3.1	3.36	3.08	3.2	0.004	0.63	0.0	0.07	12.96	0.01	2.011	4.58	0.53	4.7	95.2	0.1	-0.45	0.80	0.87	4.37	3.2	0.004	0.68	0.0	0.08	13.27	0.00	2.068	4.43	0.39	5.1	94.9	0.0	-0.15	0.38	0.80	0.89	4.50	51252	3267	21	0	69	0	24780	logfile
✔	7Z4G	14496	2024-02-15	2022-03-03	3.64	4.65	3.78	3.9	0.003	0.48	0.0	0.03	16.65	0.00	2.209	12.71	1.03	1.9	98.1	0.0	1.30	0.85	0.76	0.95	3.9	0.003	0.59	0.0	0.04	18.49	0.00	2.175	17.10	2.44	3.5	96.5	0.0	1.05	2.10	0.86	0.78	0.72	12714	1188	4	144	0	0	0	logfile
✔	7Z4E	14494	2024-02-17	2022-03-03	4.14	5.32	4.15	4.2	0.004	0.55	0.0	0.04	17.90	0.00	2.196	9.63	1.64	2.0	98.0	0.0	0.67	0.88	0.76	—	4.3	0.003	0.57	0.0	0.04	18.25	0.00	2.168	17.32	0.00	3.2	96.8	0.0	0.99	3.44	0.90	0.81	—	14069	1357	4	142	0	0	0	logfile
✔	7Z4C	14493	2024-02-17	2022-03-03	3.87	5.00	3.91	4.1	0.003	0.45	0.0	0.03	17.56	0.00	2.232	8.05	2.06	2.5	97.5	0.0	1.06	0.91	0.83	1.82	4.1	0.002	0.56	0.0	0.04	18.56	0.00	2.134	12.04	1.73	2.9	97.1	0.0	1.25	0.68	0.91	0.84	1.38	14180	1357	4	148	0	0	0	logfile
✔	7U65	26360	2024-02-25	2022-03-03	2.8	2.10	2.73	1.9	0.005	0.65	0.0	0.05	12.92	0.01	2.297	2.74	0.46	3.6	96.4	0.0	1.18	0.78	0.77	3.50	1.9	0.003	0.53	0.0	0.04	15.37	0.00	2.164	3.59	1.53	2.8	97.2	0.0	2.45	0.41	0.81	0.81	3.07	26616	3384	12	0	0	0	0	logfile
✔	7U66	26361	2024-02-25	2022-03-03	3.1	2.19	3.03	2.0	0.009	0.78	0.0	0.05	14.20	0.00	2.105	2.81	0.92	3.5	96.3	0.2	-0.05	0.78	0.78	3.54	2.0	0.003	0.53	0.0	0.04	15.71	0.00	2.072	2.79	1.95	2.6	97.4	0.0	0.82	1.00	0.80	0.81	3.08	26664	3348	24	0	12	0	0	logfile
✔	7Z4i	14498	2024-02-16	2022-03-03	3.12	3.94	3.16	3.5	0.003	0.46	0.0	0.04	17.48	0.00	2.236	7.91	0.58	1.5	98.5	0.0	0.81	0.86	0.82	2.56	3.5	0.002	0.48	0.0	0.03	18.35	0.00	2.182	8.93	0.83	1.7	98.3	0.0	1.53	2.25	0.87	0.84	2.59	13820	1338	5	137	2	0	0	logfile
✔	7U5D	26348	2024-02-21	2022-03-02	3.52	3.22	3.45	3.4	0.013	1.65	1.0	0.09	15.66	0.01	0.483	10.61	0.20	3.2	96.7	0.2	-0.43	0.86	0.79	3.11	3.4	0.004	0.66	0.0	0.04	17.30	0.00	2.189	5.28	1.28	4.7	95.3	0.0	0.00	0.75	0.89	0.86	2.82	31515	3603	13	141	0	0	0	logfile
✔	7U5S	26357	2024-02-24	2022-03-02	4.16	3.37	4.30	4.2	0.008	1.02	0.0	0.06	14.83	0.01	2.265	9.16	0.00	6.0	94.0	0.0	-4.93	0.57	0.42	—	4.2	0.003	0.75	0.0	0.04	13.47	0.00	2.082	16.77	0.00	5.7	94.3	0.0	-1.27	1.57	0.65	0.62	—	23086	3006	2	0	0	0	0	logfile
✔	7U5i	26351	2024-02-19	2022-03-02	3.26	3.14	3.37	3.2	0.002	0.56	0.0	0.04	11.62	0.00	2.219	7.74	2.82	0.8	99.2	0.0	0.87	0.63	0.75	1.83	3.2	0.003	0.66	0.0	0.04	16.11	0.00	2.139	13.74	2.12	2.4	97.6	0.0	0.28	0.63	0.70	0.80	2.18	23539	2904	16	0	0	123	0	logfile
✔	7U5L	26354	2024-02-22	2022-03-02	2.67	2.65	2.91	2.6	0.005	0.58	0.0	0.06	12.29	0.00	1.737	4.42	0.00	1.2	98.8	0.0	4.39	0.71	0.84	4.88	2.6	0.004	0.53	0.0	0.04	17.11	0.00	2.071	5.54	2.34	1.2	98.8	0.0	4.91	0.36	0.76	0.87	4.33	34104	4152	48	0	24	0	0	logfile
✔	7U5H	26350	2024-02-23	2022-03-02	3.32	3.20	3.49	3.3	0.006	0.94	12.0	0.07	14.00	0.01	1.424	10.04	5.32	3.2	96.8	0.0	-0.50	0.64	0.77	3.03	3.3	0.006	0.94	4.0	0.05	16.21	0.00	1.886	14.73	4.76	3.9	96.1	0.0	-0.49	1.22	0.66	0.79	2.81	39192	5064	24	0	24	0	0	logfile

• ← previous
• Page 241 of 633
• next →