Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7X58	33011	2024-02-14	2022-03-04	3.93	4.15	—	3.9	0.003	0.56	0.0	0.03	27.06	0.00	2.221	7.16	0.00	0.9	99.1	0.0	0.68	0.86	0.80	1.58	3.9	0.004	0.66	0.0	0.03	29.26	0.00	2.197	13.47	4.74	2.8	97.2	0.0	2.97	0.90	0.88	0.83	0.65	9775	596	10	242	0	0	0	logfile
✔	7X54	33007	2024-02-15	2022-03-04	3.9	3.96	3.89	3.9	0.003	0.61	0.0	0.04	15.23	0.00	2.121	9.13	0.39	8.6	91.4	0.0	-1.64	0.70	0.73	2.73	3.9	0.003	0.74	0.0	0.04	16.40	0.00	2.105	11.53	2.75	7.9	92.1	0.0	-0.63	1.18	0.76	0.81	1.91	11575	1425	10	0	10	0	0	logfile
✔	7Z4K	14500	2024-02-16	2022-03-04	3.81	4.83	3.89	3.9	0.003	0.44	0.0	0.03	17.22	0.00	2.200	9.44	0.99	2.4	97.6	0.0	1.12	0.85	0.75	0.54	3.9	0.004	0.68	0.0	0.04	18.93	0.00	2.087	23.16	2.55	4.6	95.4	0.0	-0.01	2.37	0.88	0.80	0.73	14005	1360	4	138	0	0	0	logfile
✔	7U6o	26377	2024-02-21	2022-03-04	3.2	4.03	3.21	3.6	0.003	0.58	0.0	0.04	13.73	0.00	2.152	17.72	0.06	3.9	96.1	0.0	0.12	0.85	0.79	1.37	3.6	0.003	0.67	0.0	0.04	15.22	0.00	2.139	17.89	0.93	3.0	97.0	0.0	0.81	0.42	0.86	0.81	1.07	29424	3816	6	0	0	0	0	logfile
✔	7Z4i	14498	2024-02-16	2022-03-03	3.12	3.94	3.16	3.5	0.003	0.46	0.0	0.04	17.48	0.00	2.236	7.91	0.58	1.5	98.5	0.0	0.81	0.86	0.82	2.56	3.5	0.002	0.48	0.0	0.03	18.35	0.00	2.182	8.93	0.83	1.7	98.3	0.0	1.53	2.25	0.87	0.84	2.59	13820	1338	5	137	2	0	0	logfile
✔	7Z4E	14494	2024-02-17	2022-03-03	4.14	5.32	4.15	4.2	0.004	0.55	0.0	0.04	17.90	0.00	2.196	9.63	1.64	2.0	98.0	0.0	0.67	0.88	0.76	—	4.3	0.003	0.57	0.0	0.04	18.25	0.00	2.168	17.32	0.00	3.2	96.8	0.0	0.99	3.44	0.90	0.81	—	14069	1357	4	142	0	0	0	logfile
✔	7Z3Z	14481	2024-02-25	2022-03-03	3.1	3.36	3.08	3.2	0.004	0.63	0.0	0.07	12.96	0.01	2.011	4.58	0.53	4.7	95.2	0.1	-0.45	0.80	0.87	4.37	3.2	0.004	0.68	0.0	0.08	13.27	0.00	2.068	4.43	0.39	5.1	94.9	0.0	-0.15	0.38	0.80	0.89	4.50	51252	3267	21	0	69	0	24780	logfile
✔	7Z4C	14493	2024-02-17	2022-03-03	3.87	5.00	3.91	4.1	0.003	0.45	0.0	0.03	17.56	0.00	2.232	8.05	2.06	2.5	97.5	0.0	1.06	0.91	0.83	1.82	4.1	0.002	0.56	0.0	0.04	18.56	0.00	2.134	12.04	1.73	2.9	97.1	0.0	1.25	0.68	0.91	0.84	1.38	14180	1357	4	148	0	0	0	logfile
✔	7U67	26362	2024-02-25	2022-03-03	2.5	2.10	2.53	1.8	0.005	0.75	0.0	0.05	17.77	0.00	2.161	3.24	0.91	2.4	97.6	0.0	-0.22	0.79	0.79	3.83	1.8	0.002	0.52	0.0	0.04	17.74	0.00	2.071	3.64	1.67	2.3	97.7	0.0	1.16	0.39	0.83	0.83	3.33	26778	3360	18	0	12	0	0	logfile
✔	7Z4H	14497	2024-02-16	2022-03-03	3.49	4.59	3.66	3.8	0.003	0.45	0.0	0.03	16.01	0.00	2.043	9.94	1.25	2.0	98.0	0.0	1.67	0.90	0.83	1.71	3.8	0.002	0.51	0.0	0.03	17.25	0.00	2.170	12.24	1.42	2.3	97.7	0.0	1.56	1.20	0.91	0.85	1.74	13900	1334	4	142	0	0	0	logfile
✔	7Z4G	14496	2024-02-15	2022-03-03	3.64	4.65	3.78	3.9	0.003	0.48	0.0	0.03	16.65	0.00	2.209	12.71	1.03	1.9	98.1	0.0	1.30	0.85	0.76	0.95	3.9	0.003	0.59	0.0	0.04	18.49	0.00	2.175	17.10	2.44	3.5	96.5	0.0	1.05	2.10	0.86	0.78	0.72	12714	1188	4	144	0	0	0	logfile
✔	7Z4J	14499	2024-02-16	2022-03-03	2.99	3.74	3.13	3.4	0.005	0.48	0.0	0.04	16.16	0.00	1.860	7.21	2.15	2.2	97.8	0.0	0.96	0.85	0.87	2.76	3.4	0.003	0.46	0.0	0.03	16.97	0.00	1.893	7.66	1.41	2.5	97.5	0.0	1.39	0.80	0.85	0.86	2.64	13948	1345	10	142	4	8	0	logfile
✔	7U65	26360	2024-02-25	2022-03-03	2.8	2.10	2.73	1.9	0.005	0.65	0.0	0.05	12.92	0.01	2.297	2.74	0.46	3.6	96.4	0.0	1.18	0.78	0.77	3.50	1.9	0.003	0.53	0.0	0.04	15.37	0.00	2.164	3.59	1.53	2.8	97.2	0.0	2.45	0.41	0.81	0.81	3.07	26616	3384	12	0	0	0	0	logfile
✔	7U66	26361	2024-02-25	2022-03-03	3.1	2.19	3.03	2.0	0.009	0.78	0.0	0.05	14.20	0.00	2.105	2.81	0.92	3.5	96.3	0.2	-0.05	0.78	0.78	3.54	2.0	0.003	0.53	0.0	0.04	15.71	0.00	2.072	2.79	1.95	2.6	97.4	0.0	0.82	1.00	0.80	0.81	3.08	26664	3348	24	0	12	0	0	logfile
✔	7U6E	26364	2024-02-13	2022-03-03	3.0	3.18	2.99	3.1	0.008	0.91	0.0	0.06	14.19	0.01	2.171	5.91	1.82	4.6	95.3	0.1	-2.19	0.79	0.74	2.42	3.1	0.003	0.73	0.0	0.05	16.47	0.00	2.155	14.61	2.72	4.3	95.7	0.0	-1.76	1.66	0.81	0.77	2.03	8004	974	9	0	10	0	0	logfile
✔	7U5L	26354	2024-02-22	2022-03-02	2.67	2.65	2.91	2.6	0.005	0.58	0.0	0.06	12.29	0.00	1.737	4.42	0.00	1.2	98.8	0.0	4.39	0.71	0.84	4.88	2.6	0.004	0.53	0.0	0.04	17.11	0.00	2.071	5.54	2.34	1.2	98.8	0.0	4.91	0.36	0.76	0.87	4.33	34104	4152	48	0	24	0	0	logfile
✔	7U5T	26358	2024-02-17	2022-03-02	3.43	3.65	3.40	3.5	0.008	1.09	0.0	0.07	13.05	0.01	2.280	7.60	0.10	6.4	93.6	0.0	-5.95	0.59	0.62	1.15	3.5	0.004	0.76	0.0	0.05	15.58	0.00	2.004	13.41	2.26	4.4	95.6	0.0	-1.40	1.10	0.64	0.74	1.43	9093	1190	2	0	0	0	0	logfile
✔	7U5S	26357	2024-02-24	2022-03-02	4.16	3.37	4.30	4.2	0.008	1.02	0.0	0.06	14.83	0.01	2.265	9.16	0.00	6.0	94.0	0.0	-4.93	0.57	0.42	—	4.2	0.003	0.75	0.0	0.04	13.47	0.00	2.082	16.77	0.00	5.7	94.3	0.0	-1.27	1.57	0.65	0.62	—	23086	3006	2	0	0	0	0	logfile
✔	7U5C	26346	2024-02-21	2022-03-02	4.6	4.72	4.53	4.6	0.006	0.87	1.0	0.05	15.09	0.01	1.932	28.65	0.39	16.4	83.6	0.1	-5.85	0.77	0.76	—	4.6	0.003	0.71	0.0	0.04	14.55	0.01	1.968	16.14	0.00	9.2	90.8	0.0	-2.25	0.70	0.77	0.76	—	30077	3740	12	4	5	0	0	logfile
✔	7U5K	26353	2024-02-16	2022-03-02	2.78	2.62	2.83	2.7	0.003	0.64	0.0	0.04	17.75	0.00	1.465	8.53	2.48	1.9	98.1	0.0	0.18	0.61	0.77	3.89	2.7	0.004	0.60	0.0	0.04	17.91	0.00	2.072	9.23	3.69	1.8	98.2	0.0	0.32	0.30	0.72	0.83	3.71	15316	1972	8	0	0	148	0	logfile

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