Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7X6U	33027	2024-02-23	2022-03-08	4.5	4.59	4.67	4.5	0.004	0.94	0.0	0.05	13.23	0.01	0.507	29.62	0.00	10.1	89.3	0.6	-3.46	0.38	0.58	—	4.5	0.005	0.89	0.0	0.05	13.23	0.01	2.142	21.52	0.00	12.0	87.6	0.3	-3.35	0.54	0.38	0.57	—	39324	5328	24	0	30	0	0	logfile
✔	7X6V	33028	2024-02-15	2022-03-08	3.6	4.04	3.51	3.9	0.011	1.52	34.0	0.12	14.93	0.01	1.450	15.04	0.62	14.7	84.3	1.0	-3.94	0.71	0.70	1.28	3.9	0.004	0.78	0.0	0.04	16.35	0.00	2.028	8.87	0.89	13.3	86.5	0.2	-2.08	1.36	0.75	0.79	1.82	10903	1429	4	0	3	0	0	logfile
✔	7U8G	26383	2024-02-14	2022-03-08	3.2	3.47	3.14	3.5	0.006	0.99	0.0	0.05	14.76	0.00	2.157	5.55	0.00	2.5	97.5	0.0	0.96	0.65	0.83	3.28	3.5	0.003	0.51	0.0	0.04	14.55	0.00	1.987	7.83	0.79	3.1	96.9	0.0	1.00	0.30	0.63	0.85	2.98	9907	621	6	0	8	0	4861	logfile
✘	7X6S	33026	2024-02-15	2022-03-08	3.4	4.06	3.56	3.9	0.010	1.44	31.0	0.10	14.71	0.01	1.947	14.25	0.18	15.8	83.8	0.4	-3.97	0.75	0.76	2.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10987	1453	2	0	1	0	0	logfile
✔	7X6C	33021	2024-02-18	2022-03-07	3.15	3.36	3.18	3.4	0.004	0.74	0.0	0.04	16.82	0.01	2.249	3.20	0.66	3.3	96.7	0.0	-0.29	0.71	0.82	3.06	3.4	0.003	0.49	0.0	0.04	16.66	0.00	2.117	5.67	0.54	3.1	96.9	0.0	1.87	1.13	0.71	0.86	3.15	22632	2700	8	0	24	0	0	logfile
✔	7U7N	26382	2024-02-13	2022-03-07	3.47	2.42	3.51	2.0	0.004	0.69	0.0	0.05	19.36	0.01	2.164	8.81	0.89	2.6	97.4	0.0	1.04	0.74	0.76	2.33	2.1	0.003	0.61	0.0	0.04	16.73	0.00	2.126	9.85	3.57	2.9	97.1	0.0	1.13	0.89	0.73	0.77	2.36	7284	884	10	0	16	0	0	logfile
✔	7X6i	33022	2024-02-22	2022-03-07	3.93	2.84	—	3.5	0.008	1.06	4.0	0.07	16.75	0.01	2.306	6.40	0.45	2.7	97.3	0.0	-0.48	0.76	0.73	1.27	3.5	0.004	0.60	0.0	0.04	17.08	0.00	2.149	8.48	2.40	3.7	96.3	0.0	1.98	3.16	0.81	0.82	1.44	32864	3968	16	0	24	0	0	logfile
✔	7X6o	33024	2024-02-18	2022-03-07	3.5	2.65	—	3.8	0.002	0.49	0.0	0.04	8.09	0.00	2.283	3.17	1.82	2.0	98.0	0.0	-3.07	0.60	0.53	0.73	2.1	0.004	0.79	0.0	0.05	12.77	0.00	2.040	18.49	2.11	4.3	95.7	0.0	-0.99	1.57	0.64	0.59	1.13	21609	2787	12	0	0	0	0	logfile
✔	7X6L	33023	2024-02-18	2022-03-07	3.7	2.76	—	2.2	0.002	0.45	0.0	0.04	7.43	0.00	2.291	4.47	2.04	1.9	97.9	0.2	-3.07	0.64	0.56	0.95	2.2	0.006	0.88	0.0	0.05	13.93	0.01	2.042	26.15	4.11	7.9	92.0	0.1	-1.88	1.02	0.68	0.63	1.29	21486	2781	12	0	0	0	0	logfile
✔	7X6A	33019	2024-02-21	2022-03-07	3.5	3.86	—	3.8	0.002	0.52	0.0	0.04	14.04	0.00	1.981	7.25	0.06	6.2	93.5	0.4	-1.29	0.76	0.78	1.61	3.8	0.003	0.59	0.0	0.04	15.78	0.00	2.131	7.30	1.79	6.1	93.5	0.4	-1.12	1.65	0.77	0.81	2.01	30879	3969	9	0	0	0	0	logfile
✔	7Z52	14513	2024-02-13	2022-03-07	3.4	3.41	3.27	3.4	0.004	0.66	0.0	0.04	15.64	0.00	2.209	8.49	0.00	1.8	98.0	0.3	-1.69	0.77	0.84	2.48	3.4	0.003	0.55	0.0	0.04	16.97	0.00	2.281	6.78	2.45	8.3	91.6	0.1	-0.53	0.60	0.77	0.87	2.34	5911	746	4	5	1	0	0	logfile
✔	7Z4Z	14511	2024-02-13	2022-03-06	4.0	3.29	3.87	3.9	0.003	0.75	1.0	0.05	14.17	0.01	2.305	11.39	0.00	2.1	97.3	0.6	-4.82	0.61	0.72	—	3.9	0.003	0.83	0.0	0.05	16.80	0.01	2.243	12.38	3.96	14.4	85.3	0.3	-1.76	0.73	0.58	0.73	—	4817	673	4	0	0	0	0	logfile
✘	7U6V	26381	2024-02-16	2022-03-06	4.1	3.17	4.21	6.8	0.002	0.52	0.0	0.04	13.79	0.00	1.948	13.74	1.57	4.7	95.3	0.0	-0.16	0.64	0.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9997	637	14	0	0	23	4901	logfile
✔	7Z4Y	14510	2024-02-16	2022-03-06	4.5	3.71	4.32	4.3	0.003	0.74	0.0	0.05	14.19	0.01	2.154	14.96	0.46	1.9	97.5	0.6	-1.98	0.69	0.68	—	4.3	0.003	0.70	0.0	0.04	13.82	0.00	2.147	15.48	0.06	8.6	91.2	0.2	-0.84	0.55	0.69	0.70	—	16756	2197	4	0	0	0	0	logfile
✔	7Z4W	14509	2024-02-14	2022-03-05	2.7	2.53	—	2.5	0.006	0.89	2.0	0.06	14.33	0.01	2.223	2.01	0.16	3.7	96.2	0.1	-1.99	0.74	0.84	4.49	2.5	0.003	0.57	0.0	0.04	16.70	0.00	2.150	3.33	1.50	3.7	96.3	0.0	1.12	0.82	0.74	0.87	4.02	58942	7242	60	0	0	406	0	logfile
✔	7X5V	33016	2024-02-14	2022-03-05	2.83	3.04	—	3.1	0.007	0.87	1.0	0.05	14.75	0.01	1.891	19.22	1.40	5.7	94.3	0.0	-2.31	0.57	0.77	2.65	3.1	0.003	0.59	0.0	0.04	16.51	0.00	2.143	10.97	2.71	4.1	95.9	0.0	1.47	1.59	0.56	0.79	2.92	9504	1176	5	0	0	0	0	logfile
✔	7U6R	26378	2024-02-19	2022-03-05	2.5	2.72	2.58	2.8	0.015	1.60	47.0	0.10	11.68	0.02	2.390	2.62	1.61	1.6	98.2	0.2	0.53	0.74	0.82	5.45	2.7	0.004	0.63	0.0	0.04	13.97	0.00	2.184	4.90	1.48	2.0	98.0	0.0	0.54	0.50	0.71	0.85	4.63	25561	3291	12	0	51	0	0	logfile
✔	7X57	33010	2024-02-14	2022-03-04	3.63	3.95	—	3.8	0.003	0.63	0.0	0.03	28.74	0.01	2.286	9.90	0.20	1.4	98.6	0.0	0.39	0.82	0.76	1.31	3.8	0.004	0.63	0.0	0.03	29.63	0.00	2.279	12.74	2.57	2.4	97.6	0.0	2.83	0.69	0.83	0.79	1.28	9767	595	10	242	0	0	0	logfile
✔	7Z4K	14500	2024-02-16	2022-03-04	3.81	4.83	3.89	3.9	0.003	0.44	0.0	0.03	17.22	0.00	2.200	9.44	0.99	2.4	97.6	0.0	1.12	0.85	0.75	0.54	3.9	0.004	0.68	0.0	0.04	18.93	0.00	2.087	23.16	2.55	4.6	95.4	0.0	-0.01	2.37	0.88	0.80	0.73	14005	1360	4	138	0	0	0	logfile
✔	7X58	33011	2024-02-14	2022-03-04	3.93	4.15	—	3.9	0.003	0.56	0.0	0.03	27.06	0.00	2.221	7.16	0.00	0.9	99.1	0.0	0.68	0.86	0.80	1.58	3.9	0.004	0.66	0.0	0.03	29.26	0.00	2.197	13.47	4.74	2.8	97.2	0.0	2.97	0.90	0.88	0.83	0.65	9775	596	10	242	0	0	0	logfile

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