Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7U9o	26402	2024-02-13	2022-03-11	3.4	3.12	3.37	3.4	0.007	0.92	0.0	0.06	10.08	0.01	2.330	1.94	0.28	9.5	90.3	0.1	-4.13	0.71	0.84	4.52	3.4	0.002	0.58	0.0	0.04	14.16	0.01	2.256	5.50	2.34	5.0	95.0	0.0	-1.49	1.09	0.69	0.85	3.24	6563	829	6	0	3	0	0	logfile
✔	7X83	33054	2024-02-13	2022-03-11	3.4	3.15	2.86	3.5	0.009	0.82	0.0	0.06	13.35	0.00	2.217	17.05	0.00	15.8	84.2	0.0	-5.71	0.38	0.84	4.55	3.5	0.004	0.67	0.0	0.05	15.11	0.00	2.267	12.29	4.76	12.8	87.2	0.0	-4.98	0.94	0.45	0.83	4.34	3258	405	3	0	0	0	0	logfile
✔	7U9Q	26405	2024-02-21	2022-03-11	3.11	3.51	—	1.9	0.003	0.85	0.0	0.04	14.30	0.01	2.065	12.40	0.66	3.4	96.5	0.1	-1.28	0.86	0.79	2.19	1.9	0.003	0.68	0.0	0.04	14.83	0.00	2.124	11.34	0.53	3.5	96.4	0.1	0.84	0.46	0.88	0.86	2.50	138608	17324	12	0	12	0	0	logfile
✔	7U9Z	26410	2024-02-21	2022-03-11	3.29	3.51	—	1.9	0.003	0.76	4.0	0.04	15.41	0.01	1.938	11.72	1.19	4.6	95.3	0.1	0.57	0.86	0.79	2.26	1.9	0.003	0.62	0.0	0.04	15.80	0.00	2.124	10.87	0.61	4.8	95.2	0.1	1.01	1.00	0.87	0.85	2.88	138688	17332	12	0	20	0	0	logfile
✔	7UA3	26413	2024-02-29	2022-03-11	2.97	3.02	—	1.7	0.003	0.69	0.0	0.04	14.13	0.01	1.967	9.63	0.52	3.9	95.9	0.2	1.12	0.85	0.80	3.29	1.8	0.005	0.65	1.0	0.04	15.04	0.00	1.628	11.05	0.56	3.7	96.1	0.2	1.37	0.35	0.87	0.84	3.27	150252	18768	16	0	12	0	0	logfile
✔	7UA9	26416	2024-02-21	2022-03-11	3.59	3.94	—	2.0	0.010	0.88	4.0	0.04	14.89	0.01	1.935	14.89	1.82	3.1	96.8	0.1	0.41	0.85	0.79	2.17	1.9	0.010	0.71	4.0	0.04	15.09	0.00	1.285	13.04	0.52	3.2	96.8	0.1	1.16	0.96	0.86	0.81	2.37	138656	17324	12	0	20	0	0	logfile
✔	7X7N	33042	2024-02-20	2022-03-10	4.47	4.03	4.49	4.2	0.013	1.05	0.0	0.06	15.66	0.01	1.956	29.11	0.52	19.6	80.3	0.1	-5.63	0.73	0.77	—	4.1	0.003	0.75	0.0	0.05	13.97	0.00	1.260	13.74	0.00	9.1	90.9	0.0	-2.48	0.74	0.72	0.76	—	26493	3314	12	0	45	0	0	logfile
✔	7U9G	26397	2024-02-16	2022-03-10	3.39	4.19	3.28	3.9	0.007	0.77	0.0	0.05	11.02	0.01	2.293	5.19	0.00	3.1	96.9	0.0	0.29	0.88	0.86	2.49	3.8	0.003	0.61	0.0	0.04	12.87	0.00	2.203	5.99	2.35	2.8	97.2	0.0	0.27	2.29	0.86	0.86	2.32	14553	1860	12	0	9	0	0	logfile
✔	7X7Y	33053	2024-02-15	2022-03-10	3.8	4.09	3.74	4.0	0.002	0.52	0.0	0.04	7.69	0.00	2.098	5.15	0.06	2.9	97.1	0.0	-3.46	0.76	0.78	1.33	4.0	0.005	0.77	1.0	0.04	13.50	0.00	1.802	13.80	2.40	4.0	96.0	0.0	0.71	1.33	0.78	0.82	0.69	63007	8247	16	0	0	0	0	logfile
✔	7X7T	33047	2024-02-13	2022-03-10	3.48	3.70	—	3.7	0.007	1.04	3.0	0.06	13.41	0.01	2.174	8.12	0.14	6.0	93.9	0.1	-4.53	0.44	0.61	3.49	3.7	0.003	0.61	0.0	0.04	15.55	0.00	2.189	8.27	3.54	3.7	96.3	0.0	-1.83	0.90	0.69	0.83	3.19	6815	871	8	0	1	0	0	logfile
✔	7X7R	33046	2024-02-14	2022-03-10	3.5	4.18	3.46	4.1	0.002	0.58	0.0	0.04	18.55	0.00	2.058	11.61	0.00	7.7	92.3	0.0	-1.19	0.71	0.68	1.20	4.1	0.002	0.61	0.0	0.04	19.76	0.00	2.004	12.32	2.11	7.6	92.4	0.0	-1.12	1.02	0.65	0.64	0.96	10529	1237	3	56	4	0	0	logfile
✔	7U8o	26385	2024-02-17	2022-03-09	3.5	4.15	3.57	2.1	0.009	1.36	29.0	0.08	15.17	0.01	2.204	7.40	5.89	4.5	95.2	0.3	0.53	0.86	0.83	1.60	2.2	0.003	0.68	0.0	0.04	15.12	0.00	2.091	14.56	2.16	3.9	96.1	0.0	1.64	1.40	0.86	0.84	1.25	68632	9348	36	0	0	0	0	logfile
✘	7Z5J	14522	2024-02-25	2022-03-09	2.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25576	3234	24	0	54	0	0	logfile
✔	7Z5C	14517	2024-02-15	2022-03-09	4.16	3.90	3.78	3.8	0.003	0.55	0.0	0.04	14.21	0.00	2.167	9.56	0.07	3.6	96.4	0.0	1.03	0.79	0.79	—	3.8	0.003	0.55	0.0	0.04	14.19	0.00	2.115	10.90	0.07	3.2	96.8	0.0	1.27	0.43	0.80	0.79	—	13707	1717	4	0	0	0	0	logfile
✔	7X7A	33040	2024-02-14	2022-03-09	3.2	3.65	3.23	3.6	0.002	0.49	0.0	0.04	16.63	0.00	2.134	8.04	0.00	5.1	94.8	0.2	-0.24	0.78	0.82	3.29	3.6	0.004	0.85	1.0	0.04	17.65	0.00	2.153	8.64	1.86	5.7	94.1	0.2	0.15	0.28	0.78	0.84	2.71	10278	1241	3	33	4	0	0	logfile
✔	7X7M	33041	2024-02-17	2022-03-09	2.33	2.38	2.34	2.3	0.007	0.72	13.0	0.05	17.99	0.01	2.256	4.82	2.56	2.6	97.4	0.0	2.72	0.78	0.86	3.51	2.3	0.007	0.77	47.0	0.06	18.49	0.01	2.176	4.68	3.49	2.7	97.3	0.0	1.79	0.50	0.80	0.88	3.56	70620	9240	60	0	0	0	0	logfile
✔	7X74	33031	2024-02-22	2022-03-09	3.7	3.88	3.72	3.8	0.005	0.80	1.0	0.05	20.73	0.01	1.912	5.88	0.87	3.4	96.6	0.0	-0.08	0.78	0.72	1.26	3.7	0.004	0.73	0.0	0.04	21.14	0.00	1.880	14.25	4.44	4.3	95.7	0.0	-0.28	1.73	0.79	0.74	1.32	32550	3733	18	173	15	0	0	logfile
✘	7X76	33033	2024-02-15	2022-03-09	3.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64334	3793	18	168	15	0	31436	logfile
✔	7X75	33032	2024-02-22	2022-03-09	3.45	3.68	3.54	3.6	0.004	0.75	1.0	0.05	19.86	0.00	1.963	4.97	0.66	3.2	96.8	0.0	0.42	0.78	0.73	1.36	3.6	0.004	0.68	0.0	0.04	20.57	0.00	2.022	13.02	3.22	3.0	97.0	0.0	0.12	0.60	0.81	0.79	1.28	34872	4055	22	168	21	0	0	logfile
✘	7X6Q	33025	2024-02-15	2022-03-08	4.5	4.41	4.61	4.3	0.009	0.73	0.0	0.06	9.96	0.00	2.197	0.93	0.01	3.2	96.7	0.2	-0.87	0.78	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64472	8440	16	0	0	0	0	logfile

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