Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UB6	26436	2024-02-19	2022-03-14	3.52	3.83	3.48	3.6	0.004	0.67	0.0	0.05	13.16	0.01	2.229	3.31	0.04	2.6	97.4	0.0	-0.83	0.85	0.85	2.91	3.6	0.004	0.52	0.0	0.04	13.69	0.00	2.132	5.43	0.70	3.2	96.8	0.0	0.30	0.27	0.85	0.86	2.80	24762	3105	10	0	36	0	0	logfile
✔	7UAQ	26430	2024-02-13	2022-03-13	3.1	3.91	2.90	3.7	0.006	1.19	2.0	0.07	13.13	0.01	2.101	25.20	0.22	11.5	88.5	0.0	-2.56	0.57	0.74	2.32	3.7	0.003	0.79	0.0	0.05	14.88	0.00	2.144	16.41	3.24	10.5	89.5	0.0	-2.12	1.26	0.57	0.78	2.14	4362	533	8	0	10	0	0	logfile
✔	7UAP	26429	2024-02-21	2022-03-13	2.8	2.98	2.85	3.0	0.007	1.27	12.0	0.08	14.62	0.01	2.041	19.84	0.29	7.1	92.4	0.6	-2.28	0.64	0.65	1.45	3.0	0.004	0.78	0.0	0.05	15.63	0.00	2.138	12.68	3.16	6.5	93.4	0.2	-1.30	1.60	0.71	0.78	1.68	31657	3957	27	0	59	0	0	logfile
✔	7UAK	26427	2024-02-13	2022-03-13	3.38	3.45	2.13	3.6	0.003	0.70	0.0	0.05	13.75	0.00	2.407	13.48	0.00	14.4	85.6	0.0	-2.82	0.31	0.67	2.41	3.6	0.004	0.71	0.0	0.05	17.15	0.00	2.293	6.45	4.92	19.2	80.8	0.0	-3.49	0.62	0.36	0.76	1.84	2586	372	6	0	0	0	0	logfile
✔	7UAi	26426	2024-02-18	2022-03-13	2.8	3.35	2.97	3.3	0.013	1.78	8.0	0.11	14.62	0.01	1.724	1.43	1.03	4.1	95.8	0.0	-0.93	0.72	0.80	2.58	3.3	0.003	0.73	0.0	0.04	15.48	0.00	1.992	14.77	3.05	3.6	96.4	0.0	-0.40	0.82	0.71	0.80	2.06	21936	2690	26	0	57	0	0	logfile
✔	7UAC	26420	2024-02-13	2022-03-12	2.7	2.83	2.85	2.6	0.012	1.79	5.0	0.11	17.45	0.02	1.626	0.57	0.00	3.2	96.8	0.0	-0.63	0.64	0.82	4.65	2.7	0.004	0.74	0.0	0.04	15.44	0.00	1.891	8.72	1.86	3.5	96.3	0.2	-0.05	1.99	0.66	0.87	3.65	4540	546	6	0	13	0	0	logfile
✔	7UAG	26425	2024-02-13	2022-03-12	3.5	3.78	3.45	3.9	0.004	0.66	0.0	0.05	13.11	0.01	2.247	17.66	0.00	6.5	93.4	0.1	-1.43	0.65	0.67	1.75	3.9	0.003	0.64	0.0	0.04	15.26	0.00	2.073	14.48	0.98	5.3	94.7	0.0	-1.14	0.39	0.66	0.67	1.04	7588	938	2	0	0	0	0	logfile
✔	7UAB	26419	2024-02-16	2022-03-12	3.7	2.37	3.72	2.1	0.013	1.72	8.0	0.10	13.98	0.02	1.293	1.13	0.44	4.0	96.0	0.1	-0.57	0.71	0.70	2.94	2.1	0.005	0.73	0.0	0.05	16.68	0.00	1.850	11.51	3.66	5.2	94.8	0.0	-0.04	1.31	0.72	0.72	2.58	16877	2042	19	0	44	0	0	logfile
✔	7UAE	26422	2024-02-13	2022-03-12	2.6	2.71	2.62	2.3	0.012	1.76	2.0	0.10	16.44	0.02	2.282	0.11	0.00	3.9	96.1	0.0	-0.18	0.66	0.87	6.01	2.3	0.004	0.71	0.0	0.04	14.82	0.00	2.185	7.76	2.10	5.3	94.7	0.0	0.12	1.65	0.68	0.89	4.46	4513	535	7	0	18	0	0	logfile
✔	7UAF	26423	2024-02-17	2022-03-12	2.4	2.07	3.04	1.6	0.012	1.80	13.0	0.10	14.57	0.02	1.783	1.19	0.16	3.1	96.9	0.0	-0.18	0.80	0.80	5.45	1.6	0.004	0.78	1.0	0.04	16.07	0.00	1.928	6.74	2.11	3.3	96.7	0.0	0.04	1.18	0.83	0.83	4.30	17864	2131	22	0	58	0	0	logfile
✔	7U9R	26407	2024-02-20	2022-03-11	3.69	3.91	—	2.1	0.003	0.85	8.0	0.04	15.25	0.01	1.708	13.03	2.45	2.4	97.5	0.1	1.06	0.80	0.69	1.99	2.0	0.003	0.59	0.0	0.04	15.15	0.00	2.151	10.32	0.43	2.8	97.1	0.1	1.54	0.50	0.82	0.80	2.62	138656	17324	12	0	20	0	0	logfile
✔	7U9T	26408	2024-02-23	2022-03-11	2.68	3.04	—	1.7	0.004	0.81	2.0	0.04	14.98	0.01	2.097	10.70	1.89	3.5	96.4	0.1	0.12	0.86	0.80	2.51	1.7	0.003	0.66	0.0	0.04	15.16	0.00	2.176	9.31	0.68	3.3	96.6	0.1	1.11	0.52	0.87	0.85	3.08	143236	17912	16	0	12	0	0	logfile
✔	7X84	33055	2024-02-13	2022-03-11	3.0	3.07	2.65	3.2	0.008	0.83	0.0	0.06	13.87	0.00	2.259	11.21	0.00	10.3	89.7	0.0	-5.69	0.40	0.84	3.98	3.2	0.006	0.80	0.0	0.05	17.34	0.00	2.115	11.37	3.17	7.3	92.7	0.0	-3.78	0.56	0.40	0.85	3.41	3258	405	3	0	0	0	0	logfile
✔	7UA1	26412	2024-02-21	2022-03-11	2.99	3.02	—	1.9	0.003	0.62	0.0	0.04	14.48	0.00	1.785	8.77	0.29	3.3	96.6	0.1	1.20	0.85	0.80	2.97	1.9	0.005	0.69	0.0	0.04	15.39	0.00	2.111	8.92	0.44	4.2	95.7	0.1	1.08	0.43	0.87	0.85	3.39	138680	17324	12	0	16	0	0	logfile
✔	7U9o	26402	2024-02-13	2022-03-11	3.4	3.12	3.37	3.4	0.007	0.92	0.0	0.06	10.08	0.01	2.330	1.94	0.28	9.5	90.3	0.1	-4.13	0.71	0.84	4.52	3.4	0.002	0.58	0.0	0.04	14.16	0.01	2.256	5.50	2.34	5.0	95.0	0.0	-1.49	1.09	0.69	0.85	3.24	6563	829	6	0	3	0	0	logfile
✘	7X8A	33056	2024-02-16	2022-03-11	2.8	3.34	2.83	3.2	0.003	0.53	0.0	0.04	15.01	0.00	2.145	9.18	0.00	5.5	94.4	0.1	0.22	0.79	0.83	3.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16031	1940	4	33	4	0	0	logfile
✔	7Z6H	14527	2024-02-18	2022-03-11	3.59	2.39	3.80	2.2	0.003	0.62	0.0	0.04	19.91	0.01	2.045	8.00	0.68	6.4	93.4	0.2	-0.27	0.74	0.70	1.41	2.2	0.003	0.57	0.0	0.04	20.00	0.00	2.064	7.73	4.78	6.3	93.5	0.2	-0.02	0.28	0.75	0.71	1.41	20629	2513	15	32	5	0	0	logfile
✔	7X83	33054	2024-02-13	2022-03-11	3.4	3.15	2.86	3.5	0.009	0.82	0.0	0.06	13.35	0.00	2.217	17.05	0.00	15.8	84.2	0.0	-5.71	0.38	0.84	4.55	3.5	0.004	0.67	0.0	0.05	15.11	0.00	2.267	12.29	4.76	12.8	87.2	0.0	-4.98	0.94	0.45	0.83	4.34	3258	405	3	0	0	0	0	logfile
✔	7U9P	26404	2024-02-13	2022-03-11	3.5	3.18	3.38	3.4	0.013	1.18	0.0	0.07	10.40	0.01	2.304	2.58	0.15	11.6	88.2	0.3	-4.34	0.69	0.84	4.54	3.4	0.003	0.61	0.0	0.04	13.85	0.00	2.153	5.65	3.54	5.6	94.4	0.0	-2.05	0.98	0.68	0.83	3.01	6126	773	6	0	4	0	0	logfile
✔	7UA5	26415	2024-02-20	2022-03-11	2.83	3.22	—	1.8	0.003	0.78	0.0	0.04	14.82	0.01	1.909	11.04	1.41	3.1	96.8	0.1	0.85	0.86	0.82	2.90	1.8	0.003	0.67	1.0	0.04	15.26	0.00	2.142	9.71	0.63	3.1	96.8	0.1	1.31	0.43	0.87	0.86	3.19	138608	17324	12	0	12	0	0	logfile

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