Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7X92	33064	2024-02-13	2022-03-15	4.1	5.14	4.05	4.5	0.005	0.74	1.0	0.06	17.17	0.01	2.106	12.50	0.27	14.5	85.5	0.0	-2.53	0.77	0.69	—	4.5	0.003	0.66	0.0	0.05	13.75	0.00	1.978	17.54	0.00	13.6	86.0	0.5	-2.75	1.20	0.78	0.75	—	6529	426	4	0	2	0	3171	logfile
✔	7UBM	26438	2024-02-22	2022-03-15	3.13	3.35	3.30	3.3	0.005	0.81	1.0	0.05	18.80	0.01	2.073	6.54	4.08	4.2	95.7	0.0	-3.51	0.84	0.84	2.04	3.3	0.004	0.74	1.0	0.05	19.13	0.00	1.972	11.61	2.66	3.6	96.4	0.0	-0.20	1.17	0.85	0.87	1.65	31583	3716	12	116	4	0	0	logfile
✔	7X9B	33070	2024-02-13	2022-03-15	3.4	3.88	—	3.9	0.003	0.53	0.0	0.04	12.11	0.00	2.284	8.58	0.13	4.0	96.0	0.0	-3.52	0.64	0.75	1.20	3.8	0.003	0.72	0.0	0.04	14.99	0.00	2.166	13.46	2.51	6.1	93.9	0.0	-1.09	1.76	0.64	0.78	1.47	7242	946	5	0	0	0	0	logfile
✔	7X8Z	33061	2024-02-13	2022-03-15	4.1	4.99	4.12	4.4	0.003	0.58	0.0	0.04	13.98	0.00	2.078	11.39	0.00	12.6	87.1	0.2	-2.94	0.80	0.68	—	4.4	0.003	0.61	0.0	0.04	13.66	0.01	1.976	15.08	0.00	12.9	86.9	0.2	-2.98	0.88	0.82	0.78	—	6480	426	4	0	1	0	3147	logfile
✔	7X95	33067	2024-02-13	2022-03-15	3.9	4.89	3.86	4.3	0.003	0.50	0.0	0.04	13.80	0.00	1.979	7.18	0.00	6.4	93.6	0.0	-1.00	0.79	0.71	3.07	4.3	0.005	0.64	0.0	0.04	13.71	0.00	1.994	16.04	0.84	9.3	90.7	0.0	-1.23	0.87	0.81	0.79	3.13	6522	427	4	0	2	0	3176	logfile
✔	7X9A	33069	2024-02-14	2022-03-15	3.2	3.87	—	3.6	0.003	0.51	0.0	0.04	10.43	0.00	2.251	7.09	0.00	3.0	97.0	0.0	-2.79	0.67	0.69	1.31	3.6	0.004	0.75	0.0	0.04	14.52	0.00	2.147	15.19	4.13	5.2	94.8	0.0	-0.80	0.77	0.70	0.81	1.70	7156	950	5	0	0	0	0	logfile
✔	7X91	33063	2024-02-13	2022-03-15	4.3	5.81	4.21	4.4	0.003	0.63	0.0	0.05	14.40	0.00	2.120	11.23	0.00	10.7	89.3	0.0	-2.69	0.81	0.73	—	4.5	0.004	0.65	0.0	0.04	13.04	0.01	2.012	18.67	0.00	13.8	86.2	0.0	-1.79	0.93	0.82	0.78	—	6559	427	4	0	2	0	3196	logfile
✔	7X93	33065	2024-02-15	2022-03-15	3.3	4.15	3.28	3.9	0.003	0.54	0.0	0.07	15.00	0.00	1.890	6.39	0.00	5.6	94.3	0.1	-0.89	0.81	0.82	2.89	3.9	0.002	0.53	0.0	0.06	14.36	0.00	1.968	7.40	0.43	5.5	94.4	0.1	-0.87	0.90	0.80	0.82	3.21	12742	828	8	0	8	0	6162	logfile
✔	7X96	33068	2024-02-13	2022-03-15	3.4	4.29	3.35	4.0	0.003	0.61	0.0	0.04	15.74	0.00	2.101	5.71	0.00	8.8	91.2	0.0	-1.35	0.74	0.82	3.22	4.0	0.003	0.53	0.0	0.04	14.48	0.00	2.091	9.02	2.19	10.0	90.0	0.0	-1.00	4.17	0.73	0.81	3.22	6586	427	4	0	6	0	3184	logfile
✔	7X8Y	33060	2024-02-13	2022-03-15	4.1	5.59	4.09	4.4	0.003	0.53	0.0	0.04	14.08	0.00	1.988	7.11	0.00	9.0	91.0	0.0	-3.09	0.77	0.65	—	4.5	0.003	0.58	0.0	0.04	13.51	0.00	1.975	12.60	0.00	10.6	89.4	0.0	-2.21	0.98	0.80	0.75	—	6731	440	4	0	1	0	3296	logfile
✔	7X8W	33059	2024-02-13	2022-03-15	3.1	3.76	3.14	3.6	0.004	0.60	0.0	0.05	16.08	0.00	2.257	4.44	0.00	5.8	94.2	0.0	-1.35	0.73	0.85	4.31	3.6	0.002	0.50	0.0	0.04	15.05	0.00	2.159	5.47	0.82	4.0	96.0	0.0	-1.00	0.90	0.70	0.82	4.39	6674	435	5	0	8	0	3214	logfile
✔	7X94	33066	2024-02-13	2022-03-15	4.0	5.15	4.05	4.4	0.003	0.62	0.0	0.05	15.70	0.00	2.194	12.77	0.00	11.0	89.0	0.0	-2.27	0.78	0.65	—	4.4	0.003	0.64	0.0	0.04	13.99	0.00	1.933	17.88	1.10	11.9	88.1	0.0	-2.00	0.88	0.80	0.76	—	6617	434	4	0	3	0	3208	logfile
✔	7UB6	26436	2024-02-19	2022-03-14	3.52	3.83	3.48	3.6	0.004	0.67	0.0	0.05	13.16	0.01	2.229	3.31	0.04	2.6	97.4	0.0	-0.83	0.85	0.85	2.91	3.6	0.004	0.52	0.0	0.04	13.69	0.00	2.132	5.43	0.70	3.2	96.8	0.0	0.30	0.27	0.85	0.86	2.80	24762	3105	10	0	36	0	0	logfile
✔	7UBB	26437	2024-02-13	2022-03-14	4.5	5.42	4.95	5.3	0.002	0.68	0.0	0.04	14.32	0.00	2.231	14.38	0.00	0.9	99.1	0.0	-1.04	0.40	0.59	—	5.3	0.002	0.58	0.0	0.04	15.00	0.00	2.247	9.30	0.00	1.8	98.2	0.0	-0.99	0.79	0.38	0.55	—	7448	896	8	0	0	0	0	logfile
✔	7Z6V	14531	2024-02-20	2022-03-14	3.1	3.16	3.00	3.1	0.010	1.64	30.0	0.14	13.89	0.02	1.932	8.12	0.45	2.8	97.1	0.1	-0.18	0.74	0.86	3.02	3.1	0.003	0.58	0.0	0.04	14.41	0.00	2.183	6.44	1.20	2.4	97.6	0.0	0.65	0.61	0.78	0.84	2.82	27154	3360	28	0	66	0	0	logfile
✔	7X8S	33058	2024-02-14	2022-03-14	3.09	3.25	—	3.2	0.020	0.81	0.0	0.29	16.19	0.00	2.155	9.12	0.22	3.4	96.5	0.1	0.09	0.65	0.76	2.35	3.2	0.004	0.92	0.0	0.16	16.95	0.00	2.147	11.09	1.11	3.5	96.5	0.0	0.33	0.32	0.64	0.78	2.28	8480	1052	5	0	1	0	0	logfile
✔	7UB2	26434	2024-02-17	2022-03-14	3.4	3.54	3.54	3.5	0.003	0.56	0.0	0.04	21.08	0.00	2.134	4.67	0.60	0.5	99.5	0.0	0.65	0.59	0.85	1.32	3.5	0.002	0.52	0.0	0.04	21.09	0.00	2.279	4.11	3.59	2.1	97.9	0.0	0.74	0.38	0.66	0.88	1.16	17579	1910	12	98	0	0	0	logfile
✔	7UB0	26433	2024-02-19	2022-03-14	3.31	3.57	3.27	3.4	0.003	0.51	0.0	0.04	13.23	0.00	2.205	4.98	0.04	2.0	98.0	0.0	-0.12	0.85	0.86	3.45	3.4	0.006	0.56	0.0	0.05	13.75	0.00	2.150	5.34	0.67	3.3	96.7	0.0	0.16	0.23	0.86	0.88	3.47	24993	3109	16	0	50	0	0	logfile
✔	7X8R	33057	2024-02-14	2022-03-14	2.61	2.75	—	2.8	0.025	0.73	0.0	0.08	14.29	0.00	2.201	7.50	0.00	3.1	96.9	0.0	0.83	0.67	0.80	3.43	2.8	0.004	0.65	0.0	0.04	16.88	0.00	1.794	6.66	1.32	3.2	96.8	0.0	1.12	0.33	0.70	0.84	2.81	8493	1051	5	0	1	0	0	logfile
✘	7UB5	26435	2024-02-19	2022-03-14	3.35	3.64	3.34	3.5	0.004	0.67	0.0	0.05	13.35	0.01	2.287	3.61	0.00	3.5	96.5	0.0	-0.85	0.85	0.87	3.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24923	3104	16	0	47	0	0	logfile

• ← previous
• Page 237 of 633
• next →