Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7X95	33067	2024-02-13	2022-03-15	3.9	4.89	3.86	4.3	0.003	0.50	0.0	0.04	13.80	0.00	1.979	7.18	0.00	6.4	93.6	0.0	-1.00	0.79	0.71	3.07	4.3	0.005	0.64	0.0	0.04	13.71	0.00	1.994	16.04	0.84	9.3	90.7	0.0	-1.23	0.87	0.81	0.79	3.13	6522	427	4	0	2	0	3176	logfile
✔	7X9C	33071	2024-02-13	2022-03-15	3.0	3.24	—	3.2	0.002	0.52	0.0	0.04	10.17	0.00	2.208	8.69	0.00	3.2	96.8	0.0	-2.49	0.58	0.71	1.58	3.2	0.003	0.67	0.0	0.04	14.50	0.00	2.166	11.85	3.19	3.8	96.2	0.0	-0.25	0.59	0.59	0.78	1.77	7219	945	5	0	0	0	0	logfile
✔	7X90	33062	2024-02-13	2022-03-15	4.2	4.77	4.13	4.4	0.003	0.58	0.0	0.04	13.96	0.00	2.191	10.21	0.00	11.8	88.2	0.0	-3.08	0.77	0.73	—	4.4	0.002	0.56	0.0	0.04	13.57	0.00	2.151	13.92	0.00	10.1	89.6	0.2	-2.83	1.17	0.76	0.76	—	6441	420	4	0	2	0	3140	logfile
✔	7UBN	26439	2024-02-23	2022-03-15	3.36	3.58	3.49	3.4	0.006	0.86	0.0	0.05	18.99	0.01	2.088	7.39	5.70	5.2	94.8	0.0	-3.81	0.88	0.86	1.96	3.4	0.005	0.66	0.0	0.04	18.96	0.00	1.899	12.77	4.57	5.0	95.0	0.0	-0.47	0.49	0.90	0.88	1.54	35069	4165	13	116	4	0	0	logfile
✔	7X94	33066	2024-02-13	2022-03-15	4.0	5.15	4.05	4.4	0.003	0.62	0.0	0.05	15.70	0.00	2.194	12.77	0.00	11.0	89.0	0.0	-2.27	0.78	0.65	—	4.4	0.003	0.64	0.0	0.04	13.99	0.00	1.933	17.88	1.10	11.9	88.1	0.0	-2.00	0.88	0.80	0.76	—	6617	434	4	0	3	0	3208	logfile
✔	7X8W	33059	2024-02-13	2022-03-15	3.1	3.76	3.14	3.6	0.004	0.60	0.0	0.05	16.08	0.00	2.257	4.44	0.00	5.8	94.2	0.0	-1.35	0.73	0.85	4.31	3.6	0.002	0.50	0.0	0.04	15.05	0.00	2.159	5.47	0.82	4.0	96.0	0.0	-1.00	0.90	0.70	0.82	4.39	6674	435	5	0	8	0	3214	logfile
✔	7UBM	26438	2024-02-22	2022-03-15	3.13	3.35	3.30	3.3	0.005	0.81	1.0	0.05	18.80	0.01	2.073	6.54	4.08	4.2	95.7	0.0	-3.51	0.84	0.84	2.04	3.3	0.004	0.74	1.0	0.05	19.13	0.00	1.972	11.61	2.66	3.6	96.4	0.0	-0.20	1.17	0.85	0.87	1.65	31583	3716	12	116	4	0	0	logfile
✔	7X9A	33069	2024-02-14	2022-03-15	3.2	3.87	—	3.6	0.003	0.51	0.0	0.04	10.43	0.00	2.251	7.09	0.00	3.0	97.0	0.0	-2.79	0.67	0.69	1.31	3.6	0.004	0.75	0.0	0.04	14.52	0.00	2.147	15.19	4.13	5.2	94.8	0.0	-0.80	0.77	0.70	0.81	1.70	7156	950	5	0	0	0	0	logfile
✔	7X92	33064	2024-02-13	2022-03-15	4.1	5.14	4.05	4.5	0.005	0.74	1.0	0.06	17.17	0.01	2.106	12.50	0.27	14.5	85.5	0.0	-2.53	0.77	0.69	—	4.5	0.003	0.66	0.0	0.05	13.75	0.00	1.978	17.54	0.00	13.6	86.0	0.5	-2.75	1.20	0.78	0.75	—	6529	426	4	0	2	0	3171	logfile
✔	7X8Y	33060	2024-02-13	2022-03-15	4.1	5.59	4.09	4.4	0.003	0.53	0.0	0.04	14.08	0.00	1.988	7.11	0.00	9.0	91.0	0.0	-3.09	0.77	0.65	—	4.5	0.003	0.58	0.0	0.04	13.51	0.00	1.975	12.60	0.00	10.6	89.4	0.0	-2.21	0.98	0.80	0.75	—	6731	440	4	0	1	0	3296	logfile
✔	7X96	33068	2024-02-13	2022-03-15	3.4	4.29	3.35	4.0	0.003	0.61	0.0	0.04	15.74	0.00	2.101	5.71	0.00	8.8	91.2	0.0	-1.35	0.74	0.82	3.22	4.0	0.003	0.53	0.0	0.04	14.48	0.00	2.091	9.02	2.19	10.0	90.0	0.0	-1.00	4.17	0.73	0.81	3.22	6586	427	4	0	6	0	3184	logfile
✔	7Z7H	14532	2024-02-16	2022-03-15	3.8	4.22	3.93	4.0	0.011	1.25	0.0	0.06	14.27	0.01	1.777	11.90	0.00	3.5	96.5	0.0	-0.19	0.75	0.77	1.93	4.0	0.003	0.74	0.0	0.04	15.63	0.00	1.880	10.28	1.74	3.9	96.1	0.0	0.17	0.90	0.76	0.81	1.69	16111	2036	12	0	12	0	0	logfile
✔	7X8S	33058	2024-02-14	2022-03-14	3.09	3.25	—	3.2	0.020	0.81	0.0	0.29	16.19	0.00	2.155	9.12	0.22	3.4	96.5	0.1	0.09	0.65	0.76	2.35	3.2	0.004	0.92	0.0	0.16	16.95	0.00	2.147	11.09	1.11	3.5	96.5	0.0	0.33	0.32	0.64	0.78	2.28	8480	1052	5	0	1	0	0	logfile
✔	7Z6V	14531	2024-02-20	2022-03-14	3.1	3.16	3.00	3.1	0.010	1.64	30.0	0.14	13.89	0.02	1.932	8.12	0.45	2.8	97.1	0.1	-0.18	0.74	0.86	3.02	3.1	0.003	0.58	0.0	0.04	14.41	0.00	2.183	6.44	1.20	2.4	97.6	0.0	0.65	0.61	0.78	0.84	2.82	27154	3360	28	0	66	0	0	logfile
✔	7UBB	26437	2024-02-13	2022-03-14	4.5	5.42	4.95	5.3	0.002	0.68	0.0	0.04	14.32	0.00	2.231	14.38	0.00	0.9	99.1	0.0	-1.04	0.40	0.59	—	5.3	0.002	0.58	0.0	0.04	15.00	0.00	2.247	9.30	0.00	1.8	98.2	0.0	-0.99	0.79	0.38	0.55	—	7448	896	8	0	0	0	0	logfile
✘	7UB5	26435	2024-02-19	2022-03-14	3.35	3.64	3.34	3.5	0.004	0.67	0.0	0.05	13.35	0.01	2.287	3.61	0.00	3.5	96.5	0.0	-0.85	0.85	0.87	3.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24923	3104	16	0	47	0	0	logfile
✔	7UB0	26433	2024-02-19	2022-03-14	3.31	3.57	3.27	3.4	0.003	0.51	0.0	0.04	13.23	0.00	2.205	4.98	0.04	2.0	98.0	0.0	-0.12	0.85	0.86	3.45	3.4	0.006	0.56	0.0	0.05	13.75	0.00	2.150	5.34	0.67	3.3	96.7	0.0	0.16	0.23	0.86	0.88	3.47	24993	3109	16	0	50	0	0	logfile
✘	7Z6Q	14528	2024-02-23	2022-03-14	2.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36557	3956	28	0	91	10	0	logfile
✔	7UB2	26434	2024-02-17	2022-03-14	3.4	3.54	3.54	3.5	0.003	0.56	0.0	0.04	21.08	0.00	2.134	4.67	0.60	0.5	99.5	0.0	0.65	0.59	0.85	1.32	3.5	0.002	0.52	0.0	0.04	21.09	0.00	2.279	4.11	3.59	2.1	97.9	0.0	0.74	0.38	0.66	0.88	1.16	17579	1910	12	98	0	0	0	logfile
✔	7UB6	26436	2024-02-19	2022-03-14	3.52	3.83	3.48	3.6	0.004	0.67	0.0	0.05	13.16	0.01	2.229	3.31	0.04	2.6	97.4	0.0	-0.83	0.85	0.85	2.91	3.6	0.004	0.52	0.0	0.04	13.69	0.00	2.132	5.43	0.70	3.2	96.8	0.0	0.30	0.27	0.85	0.86	2.80	24762	3105	10	0	36	0	0	logfile

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