Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XA3	33086	2024-02-14	2022-03-17	2.9	2.18	—	2.1	0.005	0.85	0.0	0.05	7.87	0.01	2.250	4.13	0.00	2.5	97.5	0.0	0.60	0.75	0.74	3.21	1.7	0.003	0.61	0.0	0.04	13.92	0.00	2.182	8.84	3.04	3.4	96.6	0.0	1.55	1.16	0.78	0.79	2.66	9591	1220	6	0	0	0	0	logfile
✔	7Z88	14546	2024-02-23	2022-03-16	3.33	3.00	3.54	3.1	0.005	0.92	0.0	0.05	16.28	0.01	2.160	21.19	0.19	11.3	88.6	0.1	-3.26	0.56	0.64	1.37	3.1	0.003	0.69	0.0	0.04	18.03	0.00	2.143	13.85	2.32	9.4	90.5	0.1	-1.27	1.38	0.56	0.65	0.48	38754	4750	6	52	1	0	0	logfile
✔	7Z87	14545	2024-02-23	2022-03-16	2.91	2.84	2.97	2.9	0.006	0.85	2.0	0.05	15.49	0.01	2.199	16.64	0.38	10.5	89.4	0.1	-1.73	0.41	0.59	1.38	2.9	0.003	0.71	0.0	0.04	17.98	0.00	2.135	13.43	2.43	8.8	91.2	0.0	-0.68	1.40	0.61	0.70	1.11	39708	4840	10	52	1	194	0	logfile
✔	7Z83	14541	2024-02-23	2022-03-16	2.88	2.67	—	2.7	0.005	0.79	0.0	1.47	17.17	0.01	2.199	5.61	2.59	2.4	97.6	0.0	-0.35	0.90	0.88	2.92	2.8	0.011	2.18	0.0	0.44	16.96	0.00	2.012	9.14	2.85	2.5	97.5	0.0	1.26	0.29	0.89	0.87	3.06	37546	4732	23	0	25	0	0	logfile
✔	7Z84	14542	2024-02-23	2022-03-16	2.87	2.56	—	2.7	0.004	0.76	0.0	1.46	16.76	0.01	2.221	5.51	1.65	2.0	98.0	0.0	-0.27	0.89	0.88	3.17	2.7	0.012	2.18	0.0	0.44	16.84	0.00	2.042	9.24	2.70	2.5	97.5	0.0	0.98	0.30	0.89	0.88	3.22	37772	4751	23	0	26	0	0	logfile
✔	7Z7R	14535	2024-02-23	2022-03-16	3.36	3.64	—	3.4	0.004	0.85	0.0	1.47	16.89	0.01	2.232	6.74	0.41	2.7	97.3	0.0	-0.57	0.91	0.85	2.15	3.4	0.012	2.21	0.0	0.44	17.17	0.00	2.040	13.38	3.81	3.5	96.5	0.0	0.81	1.26	0.91	0.85	2.30	37252	4750	21	0	14	0	0	logfile
✔	7X9W	33084	2024-02-14	2022-03-16	2.78	2.90	2.88	2.9	0.008	0.84	12.0	0.06	15.86	0.01	2.241	6.77	6.86	3.8	96.2	0.0	-2.46	0.78	0.83	3.91	2.9	0.002	0.57	0.0	0.04	17.07	0.00	2.100	8.38	1.48	1.5	98.4	0.0	-0.47	1.90	0.76	0.83	3.98	59640	7368	72	0	24	48	0	logfile
✔	7X9Y	33085	2024-02-14	2022-03-16	3.1	2.46	—	2.2	0.003	0.49	1.0	0.04	12.62	0.00	1.932	4.86	0.31	3.0	97.0	0.0	2.03	0.73	0.73	1.91	2.1	0.003	0.62	0.0	0.04	15.95	0.00	2.238	10.67	3.16	3.0	97.0	0.0	1.30	0.54	0.74	0.77	1.67	8982	1137	5	0	0	0	0	logfile
✔	7Z85	14543	2024-02-20	2022-03-16	3.1	2.74	3.08	3.0	0.007	0.88	0.0	0.05	13.01	0.00	2.156	5.48	0.99	3.6	96.3	0.0	-0.88	0.57	0.64	2.92	3.0	0.003	0.58	0.0	0.04	13.94	0.00	2.225	6.52	2.40	2.5	97.5	0.0	0.31	0.54	0.71	0.81	2.60	26834	3344	29	0	66	0	0	logfile
✔	7UCG	26443	2024-02-19	2022-03-16	3.5	3.64	3.50	3.6	0.005	0.98	1.0	0.07	16.14	0.01	2.253	7.06	0.00	5.4	94.2	0.4	-2.34	0.71	0.76	1.66	3.6	0.003	0.66	0.0	0.05	15.50	0.00	2.094	11.65	2.07	4.2	95.3	0.4	-1.04	1.01	0.73	0.80	1.97	25389	3063	48	0	99	0	0	logfile
✔	7Z7X	14539	2024-02-20	2022-03-16	3.3	3.02	3.24	3.2	0.006	0.72	0.0	0.05	13.27	0.00	2.149	8.13	0.11	4.3	95.7	0.0	-0.13	0.73	0.82	2.95	3.2	0.004	0.57	0.0	0.04	13.95	0.00	2.054	8.10	1.58	4.0	96.0	0.0	0.16	0.32	0.74	0.84	2.52	26906	3353	29	0	66	0	0	logfile
✔	7Z7T	14537	2024-02-23	2022-03-16	3.1	2.49	—	3.0	0.005	0.76	0.0	1.47	17.06	0.01	2.217	5.89	0.23	2.2	97.8	0.1	-0.38	0.79	0.87	2.91	3.0	0.011	2.18	0.0	0.44	17.05	0.00	2.138	10.14	2.54	2.2	97.8	0.0	0.98	0.26	0.79	0.86	3.00	37395	4721	23	0	23	0	0	logfile
✔	7Z86	14544	2024-02-20	2022-03-16	3.4	3.30	3.32	3.4	0.008	1.19	3.0	0.10	14.68	0.02	1.791	5.06	1.97	3.0	97.0	0.0	-0.77	0.59	0.70	2.40	3.4	0.003	0.59	0.0	0.04	14.08	0.00	2.182	6.47	1.66	2.6	97.4	0.0	0.60	1.27	0.74	0.80	2.50	27071	3348	29	0	66	0	0	logfile
✔	7Z80	14540	2024-02-23	2022-03-16	2.93	2.62	—	2.8	0.005	0.79	0.0	1.46	16.66	0.01	2.210	5.73	2.08	2.4	97.5	0.0	-0.51	0.88	0.87	2.63	2.8	0.012	2.23	2.0	0.44	16.75	0.00	1.914	10.47	2.42	2.6	97.4	0.0	0.84	0.33	0.89	0.87	2.85	37821	4764	24	0	28	0	0	logfile
✔	7X8Z	33061	2024-02-13	2022-03-15	4.1	4.99	4.12	4.4	0.003	0.58	0.0	0.04	13.98	0.00	2.078	11.39	0.00	12.6	87.1	0.2	-2.94	0.80	0.68	—	4.4	0.003	0.61	0.0	0.04	13.66	0.01	1.976	15.08	0.00	12.9	86.9	0.2	-2.98	0.88	0.82	0.78	—	6480	426	4	0	1	0	3147	logfile
✔	7X90	33062	2024-02-13	2022-03-15	4.2	4.77	4.13	4.4	0.003	0.58	0.0	0.04	13.96	0.00	2.191	10.21	0.00	11.8	88.2	0.0	-3.08	0.77	0.73	—	4.4	0.002	0.56	0.0	0.04	13.57	0.00	2.151	13.92	0.00	10.1	89.6	0.2	-2.83	1.17	0.76	0.76	—	6441	420	4	0	2	0	3140	logfile
✔	7X93	33065	2024-02-15	2022-03-15	3.3	4.15	3.28	3.9	0.003	0.54	0.0	0.07	15.00	0.00	1.890	6.39	0.00	5.6	94.3	0.1	-0.89	0.81	0.82	2.89	3.9	0.002	0.53	0.0	0.06	14.36	0.00	1.968	7.40	0.43	5.5	94.4	0.1	-0.87	0.90	0.80	0.82	3.21	12742	828	8	0	8	0	6162	logfile
✔	7Z7H	14532	2024-02-16	2022-03-15	3.8	4.22	3.93	4.0	0.011	1.25	0.0	0.06	14.27	0.01	1.777	11.90	0.00	3.5	96.5	0.0	-0.19	0.75	0.77	1.93	4.0	0.003	0.74	0.0	0.04	15.63	0.00	1.880	10.28	1.74	3.9	96.1	0.0	0.17	0.90	0.76	0.81	1.69	16111	2036	12	0	12	0	0	logfile
✔	7X8W	33059	2024-02-13	2022-03-15	3.1	3.76	3.14	3.6	0.004	0.60	0.0	0.05	16.08	0.00	2.257	4.44	0.00	5.8	94.2	0.0	-1.35	0.73	0.85	4.31	3.6	0.002	0.50	0.0	0.04	15.05	0.00	2.159	5.47	0.82	4.0	96.0	0.0	-1.00	0.90	0.70	0.82	4.39	6674	435	5	0	8	0	3214	logfile
✔	7X94	33066	2024-02-13	2022-03-15	4.0	5.15	4.05	4.4	0.003	0.62	0.0	0.05	15.70	0.00	2.194	12.77	0.00	11.0	89.0	0.0	-2.27	0.78	0.65	—	4.4	0.003	0.64	0.0	0.04	13.99	0.00	1.933	17.88	1.10	11.9	88.1	0.0	-2.00	0.88	0.80	0.76	—	6617	434	4	0	3	0	3208	logfile

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