Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Z9C	14570	2024-02-21	2022-03-21	3.06	3.36	3.11	3.3	0.004	0.61	0.0	0.04	14.02	0.01	1.887	1.59	0.00	6.0	94.0	0.0	0.45	0.73	0.85	3.67	3.3	0.003	0.49	0.0	0.04	16.15	0.00	1.792	2.71	0.84	5.8	94.1	0.1	0.62	0.59	0.73	0.88	3.27	31325	1838	15	64	3	10	15359	logfile
✔	7XBD	33103	2024-02-14	2022-03-21	3.11	3.35	3.12	3.4	0.003	0.53	0.0	0.04	14.05	0.00	2.201	6.38	0.00	4.8	95.2	0.0	-1.80	0.61	0.73	2.27	3.5	0.003	0.61	0.0	0.04	16.12	0.00	2.131	6.72	2.07	5.6	94.4	0.0	-0.76	0.36	0.58	0.73	1.57	8981	1153	6	0	0	0	0	logfile
✔	7Z9G	14572	2024-02-21	2022-03-21	3.25	3.56	3.29	3.6	0.005	0.86	0.0	0.04	13.20	0.00	1.903	1.53	0.13	4.8	95.2	0.0	0.79	0.73	0.82	3.03	3.6	0.004	0.53	0.0	0.04	16.27	0.00	1.766	3.83	0.52	6.2	93.8	0.0	0.58	0.73	0.75	0.87	2.86	31335	1838	15	64	3	10	15363	logfile
✔	7UDU	26460	2024-02-16	2022-03-20	4.15	4.18	4.07	4.1	0.004	0.67	0.0	0.05	14.26	0.00	2.186	10.92	0.06	6.0	94.0	0.0	-0.29	0.55	0.65	—	4.1	0.003	0.69	0.0	0.04	14.35	0.00	1.899	11.89	0.06	5.4	94.6	0.0	0.02	1.40	0.65	0.80	—	15711	1966	9	0	8	0	0	logfile
✔	7UDT	26459	2024-02-16	2022-03-20	3.17	3.35	3.18	3.3	0.003	0.59	0.0	0.04	14.89	0.00	2.197	7.48	0.24	3.3	96.7	0.0	0.38	0.55	0.69	1.91	3.3	0.003	0.64	0.0	0.04	16.59	0.00	2.004	8.18	2.12	2.8	97.2	0.0	0.55	0.73	0.63	0.80	1.76	15806	1966	8	0	6	0	0	logfile
✔	7UDS	26458	2024-02-17	2022-03-20	3.1	2.25	3.26	1.5	0.005	0.74	0.0	0.05	17.29	0.00	2.015	10.59	0.00	4.8	95.2	0.0	-0.23	0.73	0.69	2.60	1.5	0.003	0.65	0.0	0.04	15.40	0.00	2.114	10.50	2.98	4.0	96.0	0.0	-0.21	1.13	0.74	0.71	2.36	17032	2094	32	0	53	0	0	logfile
✔	7XAU	33099	2024-02-14	2022-03-19	2.97	3.19	3.01	3.2	0.011	1.19	0.0	0.06	14.13	0.01	2.187	7.25	1.17	8.1	91.9	0.0	-4.69	0.64	0.76	3.22	3.2	0.002	0.70	0.0	0.04	16.04	0.00	2.081	10.23	2.57	4.0	96.0	0.0	-1.48	1.23	0.60	0.74	2.31	8443	1141	6	0	2	0	0	logfile
✔	7XAT	33098	2024-02-14	2022-03-19	2.85	3.05	2.92	3.1	0.010	1.00	0.0	0.06	13.72	0.01	2.215	5.11	0.82	6.7	93.3	0.0	-4.15	0.66	0.82	3.83	3.1	0.005	0.69	0.0	0.04	15.72	0.00	2.182	9.61	3.04	5.6	94.4	0.0	-1.04	0.50	0.65	0.83	3.37	8470	1153	6	0	0	0	0	logfile
✔	7XAV	33100	2024-02-14	2022-03-19	2.87	3.03	2.89	3.1	0.009	1.05	0.0	0.06	14.14	0.01	1.494	7.90	0.71	8.3	91.7	0.0	-4.66	0.63	0.77	2.98	3.1	0.003	0.68	0.0	0.04	16.12	0.00	2.131	12.49	4.00	5.3	94.7	0.0	-1.48	0.58	0.60	0.76	2.38	8410	1140	6	0	1	0	0	logfile
✔	7UDB	26455	2024-02-15	2022-03-18	3.5	3.64	3.39	3.6	0.003	0.50	0.0	0.04	15.55	0.00	2.182	6.46	0.14	2.8	97.2	0.0	1.74	0.77	0.82	1.51	3.6	0.003	0.55	0.0	0.04	16.75	0.00	2.230	7.70	1.38	2.8	97.2	0.0	2.13	1.14	0.77	0.83	1.60	6472	807	3	0	0	0	0	logfile
✔	7UD5	26454	2024-02-18	2022-03-18	4.25	4.38	4.20	4.2	0.003	0.59	0.0	0.04	22.04	0.00	2.144	12.64	1.50	7.6	92.4	0.0	-2.04	0.72	0.60	—	4.2	0.004	0.65	0.0	0.04	22.40	0.00	2.148	17.62	0.06	9.1	90.9	0.0	-2.26	0.51	0.76	0.66	—	22713	2106	18	292	1	0	0	logfile
✔	7Z8R	14561	2024-02-16	2022-03-18	2.7	2.85	2.72	2.9	0.002	0.52	0.0	0.04	13.27	0.00	1.991	4.45	0.12	2.0	98.0	0.0	1.79	0.80	0.84	3.22	2.9	0.002	0.52	0.0	0.04	15.76	0.00	2.194	4.52	1.57	1.9	98.1	0.0	2.39	1.97	0.82	0.89	2.59	15124	1950	3	0	3	0	0	logfile
✔	7UDC	26456	2024-02-15	2022-03-18	3.7	3.83	3.54	3.8	0.003	0.54	0.0	0.04	14.90	0.00	2.200	7.86	0.28	3.3	96.7	0.0	1.79	0.71	0.80	1.93	3.8	0.002	0.51	0.0	0.04	16.93	0.00	2.095	6.69	1.39	3.2	96.8	0.0	2.17	0.36	0.74	0.82	1.69	6425	806	3	0	0	0	0	logfile
✔	7Z8T	14563	2024-02-17	2022-03-18	3.0	2.27	2.91	2.0	0.002	0.50	0.0	0.04	13.08	0.00	1.988	5.05	0.05	2.0	98.0	0.0	1.77	0.80	0.79	2.41	1.9	0.005	0.62	0.0	0.04	16.43	0.00	2.000	6.37	2.46	2.7	97.3	0.0	1.66	0.91	0.81	0.83	2.33	18077	2395	6	0	3	0	0	logfile
✔	7Z8S	14562	2024-02-21	2022-03-18	3.9	4.05	3.83	4.0	0.004	0.74	0.0	0.04	16.37	0.01	2.262	1.54	1.03	2.0	98.0	0.0	-0.90	0.72	0.71	1.54	3.9	0.004	0.80	1.0	0.04	18.14	0.00	2.077	9.88	2.62	3.9	96.1	0.0	0.20	2.31	0.74	0.78	1.25	29271	1692	4	72	0	0	14473	logfile
✘	7Z8V	14564	2024-02-17	2022-03-18	2.7	2.20	2.73	1.9	0.003	0.51	0.0	0.04	13.97	0.00	1.989	4.21	0.00	1.7	98.3	0.0	1.51	0.80	0.81	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18313	2417	6	0	3	0	0	logfile
✔	7Z8Q	14560	2024-02-18	2022-03-18	4.08	4.47	—	4.2	0.003	0.52	0.0	0.04	9.98	0.00	2.012	5.33	0.37	4.0	95.9	0.1	-0.46	0.78	0.70	—	4.2	0.003	0.68	0.0	0.04	12.47	0.00	2.018	12.10	0.00	4.6	95.4	0.0	-0.09	1.02	0.85	0.82	—	22485	2891	6	0	3	0	0	logfile
✔	7XAQ	33097	2024-02-18	2022-03-18	3.59	4.39	—	4.3	0.007	1.02	1.0	0.05	23.46	0.01	1.800	11.83	2.87	11.8	87.9	0.3	-4.12	0.78	0.53	0.56	3.4	0.004	0.82	0.0	0.04	24.08	0.01	1.994	24.67	3.46	8.4	91.4	0.3	-1.27	0.90	0.77	0.54	0.46	13396	1197	10	172	0	0	0	logfile
✔	7XA9	33088	2024-02-15	2022-03-17	2.84	3.16	2.86	3.2	0.010	1.33	0.0	0.07	16.62	0.01	1.938	6.67	0.17	3.6	96.4	0.0	-5.02	0.63	0.83	3.59	3.2	0.004	0.62	0.0	0.04	17.03	0.00	1.980	13.29	2.18	2.7	97.3	0.0	0.56	2.63	0.66	0.86	4.08	11028	1404	4	0	10	0	0	logfile
✔	7Z8L	14556	2024-02-16	2022-03-17	4.9	4.50	4.38	4.0	0.012	1.30	0.0	0.09	9.68	0.01	2.296	0.29	0.00	1.2	98.8	0.0	1.37	0.76	0.77	—	4.0	0.002	0.54	0.0	0.04	6.61	0.00	1.853	3.49	0.00	4.5	95.5	0.0	2.20	0.65	0.84	0.80	—	16513	3311	3	0	5	0	0	logfile

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