Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XC6	33113	2024-02-16	2022-03-23	2.79	2.93	2.77	3.0	0.006	0.72	0.0	0.05	17.67	0.00	2.003	7.10	7.75	7.1	92.9	0.0	-2.40	0.63	0.67	0.82	2.9	0.002	0.57	0.0	0.04	17.99	0.00	2.095	7.91	1.88	6.2	93.8	0.0	0.19	0.80	0.75	0.90	3.40	16176	2026	5	0	0	0	0	logfile
✔	7ZB5	14584	2024-02-13	2022-03-23	2.8	3.54	3.48	3.5	0.004	0.65	0.0	0.04	15.88	0.01	2.037	2.44	0.64	2.5	97.5	0.0	0.79	0.72	0.73	3.12	3.4	0.005	0.73	0.0	0.04	19.00	0.00	1.846	11.19	2.43	4.3	95.7	0.0	0.76	0.80	0.67	0.71	2.48	56406	3252	8	144	0	0	27856	logfile
✔	7ZBN	14587	2024-02-24	2022-03-23	2.62	2.72	2.63	2.7	0.006	0.55	0.0	0.04	15.39	0.00	2.062	10.53	0.00	3.0	97.0	0.0	0.32	0.71	0.81	4.18	2.7	0.004	0.53	0.0	0.04	17.14	0.00	2.010	10.31	0.81	2.3	97.7	0.0	0.57	0.38	0.72	0.84	3.88	41582	2608	8	0	0	0	20460	logfile
✔	7XBW	33107	2024-02-13	2022-03-22	2.8	3.01	2.74	3.1	0.005	0.54	0.0	0.04	11.69	0.00	2.251	6.45	0.00	2.6	97.4	0.0	1.47	0.60	0.72	2.24	3.1	0.004	0.62	0.0	0.04	14.60	0.00	2.081	11.67	3.18	2.1	97.9	0.0	0.58	1.57	0.60	0.77	2.28	6663	886	4	0	3	0	0	logfile
✔	7UFM	26477	2024-02-23	2022-03-22	3.9	2.97	4.04	1.8	0.009	1.77	14.0	0.08	22.52	0.01	1.075	9.26	24.41	11.0	89.0	0.0	-4.66	0.68	0.65	0.50	1.8	0.004	0.88	0.0	0.05	19.70	0.00	2.078	19.16	3.92	7.2	92.8	0.0	-1.25	0.96	0.69	0.67	0.73	36392	4354	30	72	14	0	0	logfile
✘	7UFi	26476	2024-02-17	2022-03-22	3.4	2.59	3.36	3.1	0.013	1.83	0.0	0.08	20.09	0.00	1.645	3.99	11.94	9.1	90.4	0.5	-3.89	0.66	0.70	1.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18319	2177	16	42	7	0	0	logfile
✔	7ZAG	14579	2024-02-15	2022-03-22	2.77	3.44	2.77	3.0	0.017	0.71	1.0	0.04	20.93	0.06	1.409	4.02	0.74	3.3	96.7	0.0	0.45	0.93	0.91	4.29	3.0	0.009	1.19	0.0	0.05	21.88	0.01	1.772	5.76	1.23	3.3	96.7	0.0	0.48	0.94	0.93	0.94	3.76	65678	3824	57	1596	68	379	0	logfile
✔	7UFG	26475	2024-02-22	2022-03-22	3.28	3.69	3.30	3.5	0.003	0.91	4.0	0.17	13.78	0.00	1.898	11.79	0.05	6.1	93.9	0.0	-0.23	0.79	0.80	2.36	3.5	0.003	0.92	3.0	0.17	14.81	0.00	1.912	11.88	0.56	5.8	94.2	0.0	-0.25	0.27	0.76	0.80	2.01	33028	2378	6	0	2	0	14783	logfile
✔	7ZAH	14580	2024-02-17	2022-03-22	2.7	3.02	2.71	2.8	0.017	0.83	0.0	0.05	21.20	0.06	1.407	3.78	1.24	3.4	96.6	0.0	-0.04	0.88	0.92	4.04	2.8	0.005	1.20	0.0	0.04	22.04	0.01	1.849	5.77	1.18	2.9	97.1	0.0	0.30	0.40	0.88	0.93	3.77	69366	4289	58	1596	70	379	0	logfile
✔	7XC2	33112	2024-02-25	2022-03-22	3.0	3.52	—	2.8	0.007	0.83	0.0	0.05	12.95	0.00	2.093	8.50	1.80	7.3	92.7	0.0	-2.27	0.80	0.71	2.27	2.9	0.004	0.59	0.0	0.04	14.58	0.00	2.202	6.24	1.13	5.3	94.7	0.0	0.38	2.00	0.93	0.90	1.89	52070	6445	15	0	5	0	0	logfile
✔	7XBX	33108	2024-02-15	2022-03-22	3.4	3.54	3.19	3.5	0.004	0.51	0.0	0.04	12.58	0.00	2.232	6.35	0.16	2.1	97.9	0.0	1.35	0.55	0.61	0.76	3.5	0.003	0.53	0.0	0.04	14.70	0.00	1.949	13.33	2.18	2.5	97.5	0.0	0.71	0.68	0.57	0.67	1.46	12638	909	4	0	2	0	6022	logfile
✔	7ZAi	14581	2024-02-15	2022-03-22	2.6	3.30	2.61	2.9	0.016	0.74	0.0	0.04	21.17	0.06	1.408	3.42	0.64	2.9	97.1	0.0	0.54	0.93	0.94	4.39	2.9	0.004	1.19	0.0	0.04	22.06	0.01	1.588	6.64	1.72	3.2	96.8	0.0	0.59	0.40	0.94	0.95	4.12	64649	3694	54	1596	68	379	0	logfile
✔	7Z9G	14572	2024-02-21	2022-03-21	3.25	3.56	3.29	3.6	0.005	0.86	0.0	0.04	13.20	0.00	1.903	1.53	0.13	4.8	95.2	0.0	0.79	0.73	0.82	3.03	3.6	0.004	0.53	0.0	0.04	16.27	0.00	1.766	3.83	0.52	6.2	93.8	0.0	0.58	0.73	0.75	0.87	2.86	31335	1838	15	64	3	10	15363	logfile
✔	7Z9Q	14575	2024-02-20	2022-03-21	3.6	3.22	3.81	3.4	0.010	1.54	9.0	0.09	12.57	0.01	1.974	4.74	0.88	3.4	96.3	0.3	-1.07	0.53	0.45	2.01	3.4	0.003	0.62	0.0	0.04	14.56	0.00	2.178	8.82	1.65	2.8	97.1	0.1	0.26	1.33	0.73	0.77	1.99	27065	3371	29	0	66	0	0	logfile
✔	7UEG	26474	2024-02-25	2022-03-21	4.0	4.46	4.14	4.2	0.034	0.79	6.0	0.05	12.16	0.01	0.436	24.88	0.00	8.9	90.9	0.2	-2.77	0.67	0.78	—	4.1	0.032	0.87	4.0	0.05	14.04	0.01	1.818	22.65	1.59	10.8	89.0	0.3	-2.73	1.25	0.68	0.82	—	49968	6480	36	0	0	0	0	logfile
✘	7UEB	26471	2024-02-23	2022-03-21	3.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37570	4006	25	0	106	0	0	logfile
✘	7UEA	26469	2024-02-20	2022-03-21	3.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26313	2793	16	0	77	0	0	logfile
✔	7XBD	33103	2024-02-14	2022-03-21	3.11	3.35	3.12	3.4	0.003	0.53	0.0	0.04	14.05	0.00	2.201	6.38	0.00	4.8	95.2	0.0	-1.80	0.61	0.73	2.27	3.5	0.003	0.61	0.0	0.04	16.12	0.00	2.131	6.72	2.07	5.6	94.4	0.0	-0.76	0.36	0.58	0.73	1.57	8981	1153	6	0	0	0	0	logfile
✔	7XBK	33104	2024-02-19	2022-03-21	3.7	2.43	3.78	1.9	0.005	0.86	0.0	0.05	16.04	0.01	2.095	5.74	0.00	2.9	97.0	0.0	-1.71	0.69	0.63	1.49	1.8	0.004	0.70	0.0	0.04	17.72	0.00	1.826	16.40	2.71	2.4	97.6	0.0	0.27	0.72	0.69	0.69	1.56	25745	3139	19	0	33	0	0	logfile
✔	7Z9R	14576	2024-02-20	2022-03-21	4.2	3.82	4.08	4.0	0.008	1.40	15.0	0.10	14.18	0.02	1.182	6.11	1.21	3.3	96.6	0.0	-1.16	0.71	0.73	—	3.8	0.003	0.60	0.0	0.04	12.26	0.00	2.138	6.94	0.07	2.8	97.2	0.0	0.40	0.83	0.76	0.79	—	27078	3349	29	0	66	0	0	logfile

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