Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UGX	26498	2024-02-13	2022-03-25	2.96	3.60	2.95	3.5	0.002	0.50	0.0	0.04	10.61	0.00	2.234	3.61	0.00	1.5	98.5	0.0	1.81	0.48	0.83	2.71	3.5	0.003	0.60	0.0	0.04	13.74	0.00	2.293	6.27	0.31	2.0	98.0	0.0	2.84	0.98	0.50	0.88	1.85	3108	416	1	0	3	0	0	logfile
✔	7ZC5	14620	2024-02-23	2022-03-25	3.0	2.69	—	2.6	0.007	0.85	0.0	1.48	15.78	0.01	2.216	5.43	1.96	3.0	97.0	0.0	-0.62	0.89	0.87	3.49	2.7	0.011	2.20	0.0	0.44	16.04	0.00	2.095	9.13	2.38	2.6	97.4	0.0	1.21	1.10	0.89	0.86	3.25	36692	4645	24	0	23	0	0	logfile
✔	7UGU	26406	2024-02-25	2022-03-25	2.6	2.77	2.61	2.8	0.014	2.09	33.0	0.10	14.05	0.02	2.521	0.04	0.73	5.0	94.9	0.1	-2.11	0.64	0.75	3.42	2.8	0.004	0.69	0.0	0.04	16.85	0.01	1.823	4.25	3.85	5.8	94.2	0.0	-1.07	1.40	0.61	0.74	2.45	52752	3488	8	0	0	0	26176	logfile
✔	7UGo	26492	2024-02-19	2022-03-25	4.1	4.21	4.03	4.2	0.004	0.64	0.0	0.25	16.02	0.00	0.965	8.10	0.15	5.9	94.1	0.0	-3.57	0.77	0.82	—	4.2	0.006	0.79	0.0	0.05	13.33	0.00	2.065	11.75	0.04	9.8	90.2	0.0	-2.13	1.26	0.77	0.83	—	25590	3138	44	0	87	0	0	logfile
✔	7ZBW	14594	2024-02-16	2022-03-24	3.5	2.45	3.38	2.0	0.003	0.54	0.0	0.04	13.85	0.00	2.162	5.53	0.07	2.9	97.1	0.0	1.39	0.77	0.76	1.82	2.0	0.004	0.78	1.0	0.04	16.12	0.00	2.131	7.62	1.79	3.3	96.7	0.0	1.53	0.89	0.77	0.76	1.72	14784	2014	5	0	0	0	0	logfile
✔	7XCH	33120	2024-02-25	2022-03-24	3.4	3.89	3.93	3.5	0.003	0.58	0.0	0.04	13.97	0.00	2.001	7.63	0.29	3.9	95.9	0.2	0.62	0.76	0.77	1.70	3.5	0.004	0.66	0.0	0.04	15.25	0.00	1.962	12.06	1.97	6.6	93.3	0.2	-0.19	0.84	0.77	0.83	1.74	35749	4381	33	0	72	0	0	logfile
✔	7XCP	33125	2024-02-16	2022-03-24	3.05	3.19	3.01	3.2	0.003	0.58	1.0	0.04	14.24	0.00	2.182	10.72	0.23	3.6	96.3	0.1	0.72	0.65	0.71	2.53	3.2	0.003	0.55	0.0	0.04	15.11	0.00	2.000	12.02	1.24	4.0	96.0	0.0	0.91	0.73	0.67	0.74	2.29	8261	1017	7	0	8	0	0	logfile
✔	7XCK	33123	2024-02-14	2022-03-24	2.5	2.98	2.85	3.0	0.004	0.71	0.0	0.05	12.63	0.01	2.179	4.89	0.00	4.6	95.3	0.1	-0.89	0.61	0.81	4.36	3.0	0.003	0.67	0.0	0.05	15.24	0.01	2.202	6.09	2.63	5.6	94.4	0.0	-0.86	1.20	0.57	0.82	3.99	5488	704	4	0	3	0	0	logfile
✔	7UG6	26485	2024-02-22	2022-03-24	2.9	2.56	3.01	2.9	0.010	0.89	0.0	0.05	22.36	0.01	2.043	9.51	0.01	4.6	95.4	0.0	-1.03	0.77	0.86	4.01	2.9	0.006	0.66	0.0	0.04	22.49	0.00	1.997	11.79	2.97	4.0	96.0	0.0	0.23	0.31	0.78	0.87	3.18	140950	8738	53	3338	1	0	0	logfile
✔	7XCi	33121	2024-02-15	2022-03-24	3.2	3.43	3.23	3.5	0.009	0.75	0.0	0.04	13.67	0.01	2.000	6.88	0.14	3.3	96.4	0.3	0.57	0.68	0.81	2.87	3.4	0.003	0.56	0.0	0.04	14.68	0.00	2.168	6.26	1.29	3.6	96.3	0.1	1.21	1.02	0.68	0.84	2.71	6547	791	5	0	9	0	0	logfile
✔	7ZBZ	14597	2024-02-17	2022-03-24	3.1	2.28	2.98	2.0	0.003	0.52	0.0	0.04	13.60	0.00	1.989	4.41	0.00	1.7	98.3	0.0	1.68	0.80	0.80	2.31	2.0	0.005	0.58	0.0	0.04	15.72	0.00	1.998	5.39	2.11	2.2	97.8	0.0	1.93	0.31	0.82	0.83	1.86	18156	2394	6	0	3	0	0	logfile
✔	7UGJ	26489	2024-02-13	2022-03-24	2.81	3.45	2.86	3.2	0.002	0.50	0.0	0.04	10.72	0.00	2.285	3.79	0.00	0.7	99.3	0.0	2.01	0.54	0.89	3.90	3.3	0.003	0.60	0.0	0.04	13.41	0.00	2.202	5.21	2.86	0.7	99.3	0.0	2.78	0.53	0.51	0.86	2.03	3095	416	1	0	3	0	0	logfile
✔	7XCo	33124	2024-02-25	2022-03-24	2.5	2.73	2.69	2.7	0.003	0.59	0.0	0.05	15.81	0.00	2.183	6.85	2.72	5.1	94.8	0.2	0.04	0.67	0.80	2.56	2.7	0.005	0.73	1.0	0.05	16.01	0.00	2.074	8.68	3.85	6.4	93.5	0.1	-0.16	0.31	0.67	0.85	2.70	35802	4494	31	0	63	0	0	logfile
✔	7UGD	26487	2024-02-13	2022-03-24	2.95	3.61	2.95	3.5	0.002	0.45	0.0	0.04	11.38	0.00	2.005	2.21	0.00	0.7	99.3	0.0	0.34	0.49	0.84	3.05	3.5	0.003	0.54	0.0	0.04	14.40	0.00	2.229	2.85	1.56	0.0	100.0	0.0	2.56	0.44	0.50	0.85	1.91	3079	415	1	0	3	0	0	logfile
✔	7UGG	26488	2024-02-18	2022-03-24	3.16	3.39	3.21	3.3	0.012	1.44	0.0	0.05	18.84	0.01	2.192	3.34	0.54	7.2	92.5	0.3	-6.21	0.72	0.82	3.49	3.3	0.003	0.63	0.0	0.04	17.40	0.00	2.218	6.45	1.18	5.4	94.5	0.2	-1.08	1.08	0.73	0.87	2.59	21670	2480	12	0	30	124	0	logfile
✔	7ZBN	14587	2024-02-24	2022-03-23	2.62	2.72	2.63	2.7	0.006	0.55	0.0	0.04	15.39	0.00	2.062	10.53	0.00	3.0	97.0	0.0	0.32	0.71	0.81	4.18	2.7	0.004	0.53	0.0	0.04	17.14	0.00	2.010	10.31	0.81	2.3	97.7	0.0	0.57	0.38	0.72	0.84	3.88	41582	2608	8	0	0	0	20460	logfile
✘	7UFT	26480	2024-02-21	2022-03-23	2.9	3.31	—	3.2	0.007	0.74	0.0	0.05	13.89	0.00	1.910	6.47	0.94	8.9	91.1	0.0	-3.81	0.74	0.88	3.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32324	4128	8	0	4	0	0	logfile
✔	7ZB5	14584	2024-02-13	2022-03-23	2.8	3.54	3.48	3.5	0.004	0.65	0.0	0.04	15.88	0.01	2.037	2.44	0.64	2.5	97.5	0.0	0.79	0.72	0.73	3.12	3.4	0.005	0.73	0.0	0.04	19.00	0.00	1.846	11.19	2.43	4.3	95.7	0.0	0.76	0.80	0.67	0.71	2.48	56406	3252	8	144	0	0	27856	logfile
✔	7UG0	26482	2024-02-13	2022-03-23	2.55	3.24	2.49	3.1	0.002	0.45	0.0	0.04	11.57	0.00	2.287	2.34	0.00	1.0	99.0	0.0	2.00	0.56	0.90	3.59	3.0	0.003	0.45	0.0	0.04	12.64	0.00	2.212	4.68	0.62	0.7	99.3	0.0	3.98	1.26	0.53	0.87	2.05	3126	418	1	0	3	4	0	logfile
✔	7UFS	26479	2024-02-22	2022-03-23	3.4	3.90	—	3.8	0.003	0.63	0.0	0.04	13.89	0.00	1.969	8.55	0.12	5.8	94.2	0.0	-0.72	0.72	0.84	2.68	3.8	0.004	0.64	0.0	0.04	16.01	0.00	1.945	9.86	2.55	7.3	92.7	0.0	-0.75	0.76	0.73	0.87	2.35	32596	4160	8	0	4	0	0	logfile

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