Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UH3	26504	2024-02-13	2022-03-25	2.99	3.63	2.98	3.5	0.003	0.61	0.0	0.04	10.05	0.00	1.909	4.09	0.00	2.0	98.0	0.0	0.91	0.48	0.84	2.83	3.5	0.003	0.69	0.0	0.04	13.95	0.00	2.241	8.18	2.79	2.7	97.3	0.0	1.68	1.34	0.49	0.86	1.22	3096	416	1	0	3	0	0	logfile
✔	7ZC6	14622	2024-02-15	2022-03-25	4.27	4.35	4.17	4.3	0.014	1.95	12.0	2.55	19.30	0.01	2.098	12.11	10.79	6.1	93.1	0.8	-1.59	0.66	0.74	—	4.3	0.020	3.91	0.0	0.76	14.88	0.00	1.106	12.74	0.08	4.9	95.1	0.0	-1.15	0.73	0.68	0.78	—	11428	1513	11	0	12	0	0	logfile
✔	7UH6	26505	2024-02-13	2022-03-25	3.44	4.04	3.47	3.8	0.003	0.63	0.0	0.04	10.58	0.00	2.012	6.13	0.31	1.7	98.3	0.0	0.84	0.49	0.80	2.18	3.8	0.003	0.69	0.0	0.04	12.41	0.00	2.191	10.38	0.93	1.2	98.8	0.0	1.39	1.04	0.51	0.83	1.86	3095	416	1	0	3	0	0	logfile
✔	7UGX	26498	2024-02-13	2022-03-25	2.96	3.60	2.95	3.5	0.002	0.50	0.0	0.04	10.61	0.00	2.234	3.61	0.00	1.5	98.5	0.0	1.81	0.48	0.83	2.71	3.5	0.003	0.60	0.0	0.04	13.74	0.00	2.293	6.27	0.31	2.0	98.0	0.0	2.84	0.98	0.50	0.88	1.85	3108	416	1	0	3	0	0	logfile
✔	7ZBW	14594	2024-02-16	2022-03-24	3.5	2.45	3.38	2.0	0.003	0.54	0.0	0.04	13.85	0.00	2.162	5.53	0.07	2.9	97.1	0.0	1.39	0.77	0.76	1.82	2.0	0.004	0.78	1.0	0.04	16.12	0.00	2.131	7.62	1.79	3.3	96.7	0.0	1.53	0.89	0.77	0.76	1.72	14784	2014	5	0	0	0	0	logfile
✔	7XCH	33120	2024-02-25	2022-03-24	3.4	3.89	3.93	3.5	0.003	0.58	0.0	0.04	13.97	0.00	2.001	7.63	0.29	3.9	95.9	0.2	0.62	0.76	0.77	1.70	3.5	0.004	0.66	0.0	0.04	15.25	0.00	1.962	12.06	1.97	6.6	93.3	0.2	-0.19	0.84	0.77	0.83	1.74	35749	4381	33	0	72	0	0	logfile
✔	7ZBZ	14597	2024-02-17	2022-03-24	3.1	2.28	2.98	2.0	0.003	0.52	0.0	0.04	13.60	0.00	1.989	4.41	0.00	1.7	98.3	0.0	1.68	0.80	0.80	2.31	2.0	0.005	0.58	0.0	0.04	15.72	0.00	1.998	5.39	2.11	2.2	97.8	0.0	1.93	0.31	0.82	0.83	1.86	18156	2394	6	0	3	0	0	logfile
✔	7UGD	26487	2024-02-13	2022-03-24	2.95	3.61	2.95	3.5	0.002	0.45	0.0	0.04	11.38	0.00	2.005	2.21	0.00	0.7	99.3	0.0	0.34	0.49	0.84	3.05	3.5	0.003	0.54	0.0	0.04	14.40	0.00	2.229	2.85	1.56	0.0	100.0	0.0	2.56	0.44	0.50	0.85	1.91	3079	415	1	0	3	0	0	logfile
✔	7UGG	26488	2024-02-18	2022-03-24	3.16	3.39	3.21	3.3	0.012	1.44	0.0	0.05	18.84	0.01	2.192	3.34	0.54	7.2	92.5	0.3	-6.21	0.72	0.82	3.49	3.3	0.003	0.63	0.0	0.04	17.40	0.00	2.218	6.45	1.18	5.4	94.5	0.2	-1.08	1.08	0.73	0.87	2.59	21670	2480	12	0	30	124	0	logfile
✔	7XCP	33125	2024-02-16	2022-03-24	3.05	3.19	3.01	3.2	0.003	0.58	1.0	0.04	14.24	0.00	2.182	10.72	0.23	3.6	96.3	0.1	0.72	0.65	0.71	2.53	3.2	0.003	0.55	0.0	0.04	15.11	0.00	2.000	12.02	1.24	4.0	96.0	0.0	0.91	0.73	0.67	0.74	2.29	8261	1017	7	0	8	0	0	logfile
✔	7XCo	33124	2024-02-25	2022-03-24	2.5	2.73	2.69	2.7	0.003	0.59	0.0	0.05	15.81	0.00	2.183	6.85	2.72	5.1	94.8	0.2	0.04	0.67	0.80	2.56	2.7	0.005	0.73	1.0	0.05	16.01	0.00	2.074	8.68	3.85	6.4	93.5	0.1	-0.16	0.31	0.67	0.85	2.70	35802	4494	31	0	63	0	0	logfile
✔	7UGJ	26489	2024-02-13	2022-03-24	2.81	3.45	2.86	3.2	0.002	0.50	0.0	0.04	10.72	0.00	2.285	3.79	0.00	0.7	99.3	0.0	2.01	0.54	0.89	3.90	3.3	0.003	0.60	0.0	0.04	13.41	0.00	2.202	5.21	2.86	0.7	99.3	0.0	2.78	0.53	0.51	0.86	2.03	3095	416	1	0	3	0	0	logfile
✔	7XCK	33123	2024-02-14	2022-03-24	2.5	2.98	2.85	3.0	0.004	0.71	0.0	0.05	12.63	0.01	2.179	4.89	0.00	4.6	95.3	0.1	-0.89	0.61	0.81	4.36	3.0	0.003	0.67	0.0	0.05	15.24	0.01	2.202	6.09	2.63	5.6	94.4	0.0	-0.86	1.20	0.57	0.82	3.99	5488	704	4	0	3	0	0	logfile
✔	7UG6	26485	2024-02-22	2022-03-24	2.9	2.56	3.01	2.9	0.010	0.89	0.0	0.05	22.36	0.01	2.043	9.51	0.01	4.6	95.4	0.0	-1.03	0.77	0.86	4.01	2.9	0.006	0.66	0.0	0.04	22.49	0.00	1.997	11.79	2.97	4.0	96.0	0.0	0.23	0.31	0.78	0.87	3.18	140950	8738	53	3338	1	0	0	logfile
✔	7XCi	33121	2024-02-15	2022-03-24	3.2	3.43	3.23	3.5	0.009	0.75	0.0	0.04	13.67	0.01	2.000	6.88	0.14	3.3	96.4	0.3	0.57	0.68	0.81	2.87	3.4	0.003	0.56	0.0	0.04	14.68	0.00	2.168	6.26	1.29	3.6	96.3	0.1	1.21	1.02	0.68	0.84	2.71	6547	791	5	0	9	0	0	logfile
✔	7XC7	33114	2024-02-16	2022-03-23	3.1	2.36	3.16	3.1	0.003	0.58	0.0	0.04	16.03	0.00	2.134	11.63	0.07	6.9	93.0	0.1	-0.62	0.74	0.72	2.89	2.1	0.003	0.64	0.0	0.04	17.77	0.00	2.104	13.01	2.82	7.5	92.4	0.1	-0.52	0.40	0.76	0.75	2.06	15108	1840	4	50	4	0	0	logfile
✔	7ZBN	14587	2024-02-24	2022-03-23	2.62	2.72	2.63	2.7	0.006	0.55	0.0	0.04	15.39	0.00	2.062	10.53	0.00	3.0	97.0	0.0	0.32	0.71	0.81	4.18	2.7	0.004	0.53	0.0	0.04	17.14	0.00	2.010	10.31	0.81	2.3	97.7	0.0	0.57	0.38	0.72	0.84	3.88	41582	2608	8	0	0	0	20460	logfile
✘	7UFT	26480	2024-02-21	2022-03-23	2.9	3.31	—	3.2	0.007	0.74	0.0	0.05	13.89	0.00	1.910	6.47	0.94	8.9	91.1	0.0	-3.81	0.74	0.88	3.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32324	4128	8	0	4	0	0	logfile
✔	7ZAY	14582	2024-02-14	2022-03-23	2.8	3.08	2.67	3.0	0.003	0.61	0.0	0.04	13.25	0.01	2.203	13.00	1.09	7.8	92.0	0.2	-1.32	0.62	0.73	2.43	3.0	0.004	0.75	0.0	0.05	15.80	0.00	2.122	16.63	3.46	6.5	93.3	0.3	-1.12	1.31	0.61	0.75	2.52	9339	1146	4	1	4	0	0	logfile
✔	7UFS	26479	2024-02-22	2022-03-23	3.4	3.90	—	3.8	0.003	0.63	0.0	0.04	13.89	0.00	1.969	8.55	0.12	5.8	94.2	0.0	-0.72	0.72	0.84	2.68	3.8	0.004	0.64	0.0	0.04	16.01	0.00	1.945	9.86	2.55	7.3	92.7	0.0	-0.75	0.76	0.73	0.87	2.35	32596	4160	8	0	4	0	0	logfile

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