Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XD1	33132	2024-02-15	2022-03-26	3.2	2.74	3.19	3.1	0.009	0.87	0.0	0.05	26.77	0.01	2.339	2.77	1.59	1.3	98.7	0.0	-5.83	0.76	0.83	4.00	3.1	0.003	0.61	0.0	0.04	28.31	0.00	2.067	7.15	2.54	1.7	98.3	0.0	1.54	0.47	0.78	0.84	2.66	12048	760	10	294	0	0	0	logfile
✔	7XD7	33138	2024-02-14	2022-03-26	3.02	3.40	—	3.1	0.003	0.61	0.0	0.04	23.14	0.00	1.736	0.77	0.00	0.0	0.0	0.0	—	0.90	0.86	—	3.1	0.007	0.67	0.0	0.04	23.18	0.00	1.877	7.58	0.00	0.0	0.0	0.0	—	2.21	0.92	0.92	—	8693	0	1	405	30	0	0	logfile
✔	7XD6	33137	2024-02-14	2022-03-26	2.84	3.25	2.83	3.0	0.005	0.74	0.0	0.04	23.79	0.00	1.975	1.30	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.1	0.005	0.68	0.0	0.04	23.96	0.00	1.878	7.75	0.00	0.0	0.0	0.0	—	1.32	0.88	0.89	—	9843	0	3	459	29	0	0	logfile
✔	7XD5	33136	2024-02-14	2022-03-26	2.84	3.32	2.81	3.1	0.003	0.58	0.0	0.03	23.20	0.00	1.864	0.61	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.1	0.004	0.65	0.0	0.04	23.41	0.00	1.948	6.18	0.00	0.0	0.0	0.0	—	1.38	0.89	0.90	—	8714	0	3	406	30	0	0	logfile
✔	7XCZ	33130	2024-02-16	2022-03-26	3.2	3.36	3.17	3.3	0.004	0.51	0.0	0.05	15.75	0.00	2.009	5.37	0.90	8.1	91.8	0.1	-3.76	0.72	0.82	3.54	3.3	0.002	0.53	0.0	0.05	15.97	0.00	1.918	4.86	1.58	4.9	95.0	0.1	-0.53	0.64	0.73	0.84	3.35	15836	1069	5	0	0	0	7747	logfile
✔	7UHF	26513	2024-02-18	2022-03-26	3.1	3.21	—	3.2	0.004	0.70	0.0	0.05	16.85	0.00	2.053	10.13	2.31	5.5	94.4	0.1	-1.07	0.55	0.79	2.79	3.2	0.003	0.60	0.0	0.04	16.54	0.00	2.159	7.26	1.95	4.7	95.2	0.1	-0.21	0.37	0.54	0.82	2.55	20379	2502	10	0	21	0	0	logfile
✔	7XD2	33133	2024-02-20	2022-03-26	3.3	3.54	3.35	3.5	0.014	1.96	87.0	0.14	13.73	0.01	1.416	9.60	0.98	4.9	94.4	0.7	-0.69	0.63	0.61	2.26	3.5	0.007	0.71	1.0	0.05	14.88	0.00	2.045	8.77	1.59	4.7	95.1	0.1	-0.82	0.59	0.75	0.79	2.48	28084	3753	9	0	0	0	0	logfile
✔	7XDB	33142	2024-02-21	2022-03-26	2.62	2.82	2.70	2.8	0.004	0.64	0.0	0.05	12.33	0.01	2.111	9.82	0.00	1.9	98.1	0.0	0.54	0.69	0.83	3.23	2.8	0.002	0.53	0.0	0.04	14.50	0.00	2.125	7.65	1.06	2.3	97.7	0.0	0.34	0.42	0.69	0.86	3.25	30189	3779	23	0	38	0	0	logfile
✘	7UHG	26514	2024-02-18	2022-03-26	3.0	3.13	—	3.1	0.004	0.58	0.0	0.05	16.29	0.00	2.167	7.48	0.09	4.4	95.5	0.1	-1.09	0.60	0.83	2.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20414	2502	11	0	23	0	0	logfile
✔	7UHB	26511	2024-02-13	2022-03-26	3.0	3.17	2.97	3.2	0.011	1.36	3.0	0.12	9.64	0.00	2.562	5.08	1.42	3.0	96.6	0.4	-0.52	0.52	0.54	-0.09	3.1	0.003	0.62	0.0	0.04	15.90	0.00	2.297	8.46	4.27	3.0	97.0	0.0	1.11	2.45	0.69	0.83	3.32	2141	270	3	0	3	0	0	logfile
✔	7XCR	33126	2024-02-18	2022-03-25	2.57	2.86	—	2.8	0.008	0.97	0.0	0.05	23.82	0.01	2.228	4.12	0.90	4.3	95.6	0.2	-4.82	0.76	0.83	4.14	2.8	0.004	0.67	0.0	0.04	26.11	0.00	2.125	8.91	3.20	4.0	95.9	0.1	0.80	0.49	0.76	0.85	3.41	15400	1174	13	292	1	0	0	logfile
✔	7ZC5	14620	2024-02-23	2022-03-25	3.0	2.69	—	2.6	0.007	0.85	0.0	1.48	15.78	0.01	2.216	5.43	1.96	3.0	97.0	0.0	-0.62	0.89	0.87	3.49	2.7	0.011	2.20	0.0	0.44	16.04	0.00	2.095	9.13	2.38	2.6	97.4	0.0	1.21	1.10	0.89	0.86	3.25	36692	4645	24	0	23	0	0	logfile
✔	7UGQ	26496	2024-02-19	2022-03-25	3.4	3.41	3.34	3.4	0.007	1.08	4.0	0.10	18.24	0.01	0.915	7.03	7.30	7.3	92.7	0.0	-4.58	0.75	0.79	2.03	3.4	0.003	0.73	0.0	0.05	15.07	0.00	2.128	11.77	4.38	7.0	93.0	0.0	-2.37	1.01	0.78	0.84	1.87	26113	3138	60	0	134	0	0	logfile
✔	7XCT	33127	2024-02-19	2022-03-25	2.72	3.02	—	3.0	0.012	1.11	0.0	0.06	22.81	0.01	2.220	3.84	0.59	5.3	94.3	0.4	-5.11	0.73	0.82	3.79	3.0	0.004	0.68	0.0	0.04	24.74	0.01	2.091	8.00	3.24	6.0	94.0	0.1	-0.16	0.54	0.75	0.86	2.59	18633	1575	16	290	2	0	0	logfile
✔	7ZC6	14622	2024-02-15	2022-03-25	4.27	4.35	4.17	4.3	0.014	1.95	12.0	2.55	19.30	0.01	2.098	12.11	10.79	6.1	93.1	0.8	-1.59	0.66	0.74	—	4.3	0.020	3.91	0.0	0.76	14.88	0.00	1.106	12.74	0.08	4.9	95.1	0.0	-1.15	0.73	0.68	0.78	—	11428	1513	11	0	12	0	0	logfile
✔	7ZC4	14619	2024-02-16	2022-03-25	3.24	2.31	3.25	3.4	0.003	0.66	0.0	0.04	15.19	0.00	2.152	12.98	0.00	3.6	96.4	0.0	2.81	0.64	0.60	1.74	3.4	0.004	0.67	0.0	0.04	16.46	0.00	2.121	12.78	1.17	3.6	96.4	0.0	2.23	1.17	0.68	0.65	1.84	7272	926	1	0	0	0	0	logfile
✔	7UGN	26490	2024-02-19	2022-03-25	3.4	3.60	3.35	3.4	0.004	0.65	0.0	0.19	15.93	0.01	0.844	6.76	0.11	4.5	95.5	0.0	-3.47	0.83	0.84	2.43	3.5	0.004	0.67	0.0	0.05	15.11	0.00	2.186	8.23	4.25	6.3	93.7	0.0	-1.83	1.00	0.84	0.88	2.36	25698	3150	49	0	87	0	0	logfile
✔	7UH3	26504	2024-02-13	2022-03-25	2.99	3.63	2.98	3.5	0.003	0.61	0.0	0.04	10.05	0.00	1.909	4.09	0.00	2.0	98.0	0.0	0.91	0.48	0.84	2.83	3.5	0.003	0.69	0.0	0.04	13.95	0.00	2.241	8.18	2.79	2.7	97.3	0.0	1.68	1.34	0.49	0.86	1.22	3096	416	1	0	3	0	0	logfile
✔	7UGX	26498	2024-02-13	2022-03-25	2.96	3.60	2.95	3.5	0.002	0.50	0.0	0.04	10.61	0.00	2.234	3.61	0.00	1.5	98.5	0.0	1.81	0.48	0.83	2.71	3.5	0.003	0.60	0.0	0.04	13.74	0.00	2.293	6.27	0.31	2.0	98.0	0.0	2.84	0.98	0.50	0.88	1.85	3108	416	1	0	3	0	0	logfile
✔	7UGo	26492	2024-02-19	2022-03-25	4.1	4.21	4.03	4.2	0.004	0.64	0.0	0.25	16.02	0.00	0.965	8.10	0.15	5.9	94.1	0.0	-3.57	0.77	0.82	—	4.2	0.006	0.79	0.0	0.05	13.33	0.00	2.065	11.75	0.04	9.8	90.2	0.0	-2.13	1.26	0.77	0.83	—	25590	3138	44	0	87	0	0	logfile

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