Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XDT	33152	2024-02-14	2022-03-28	3.31	3.64	3.32	3.5	0.003	0.61	0.0	0.04	17.78	0.01	2.081	11.26	0.23	5.2	94.8	0.0	-0.03	0.72	0.65	0.76	3.5	0.002	0.62	0.0	0.04	18.71	0.00	2.106	12.29	5.63	5.3	94.7	0.0	0.57	0.54	0.76	0.70	0.39	41990	5310	10	0	0	0	0	logfile
✔	7Ui7	26541	2024-02-17	2022-03-28	3.4	2.54	3.38	2.3	0.004	0.61	0.0	0.04	14.83	0.00	1.897	14.09	0.00	7.6	92.4	0.0	-1.83	0.65	0.66	1.99	2.3	0.003	0.59	0.0	0.04	16.55	0.00	2.003	13.65	1.27	6.8	93.2	0.0	-1.33	0.44	0.65	0.67	1.83	20293	1226	4	0	4	0	10079	logfile
✔	7ZCi	14632	2024-02-23	2022-03-28	2.69	2.32	—	1.8	0.007	0.83	0.0	1.48	16.29	0.01	2.217	4.86	1.77	2.6	97.4	0.0	-0.36	0.89	0.89	3.87	2.2	0.011	2.19	0.0	0.44	16.35	0.00	2.090	8.71	1.95	2.3	97.7	0.0	1.40	0.27	0.89	0.87	3.38	36981	4650	24	0	28	0	0	logfile
✔	7ZCE	14628	2024-02-21	2022-03-28	3.5	3.69	3.48	3.6	0.005	0.70	0.0	0.05	15.54	0.00	2.080	8.45	0.03	8.6	91.4	0.0	-1.09	0.77	0.84	2.13	3.6	0.003	0.61	0.0	0.04	15.45	0.00	2.150	8.95	1.52	8.6	91.4	0.0	-1.06	0.40	0.77	0.85	1.85	29502	3706	21	0	51	0	0	logfile
✔	7ZCF	14629	2024-02-13	2022-03-28	4.0	4.23	3.97	4.2	0.003	0.66	0.0	0.04	14.30	0.00	2.089	10.15	0.56	14.8	85.2	0.0	-2.45	0.67	0.71	—	4.2	0.003	0.70	0.0	0.04	16.38	0.00	2.088	13.22	4.75	17.4	82.6	0.0	-2.76	0.59	0.70	0.77	—	3312	426	3	0	1	0	0	logfile
✔	7UHZ	26520	2024-02-17	2022-03-28	3.3	3.67	3.29	3.6	0.005	0.77	0.0	0.05	13.20	0.00	2.033	19.15	0.00	5.0	95.0	0.0	-1.49	0.81	0.81	2.74	3.5	0.005	0.69	0.0	0.04	15.54	0.00	2.058	17.30	2.15	4.0	96.0	0.0	-0.79	0.62	0.82	0.85	2.94	19299	2421	9	0	0	0	0	logfile
✔	7ZCU	14633	2024-02-14	2022-03-28	2.7	2.42	2.63	2.6	0.005	0.95	0.0	0.04	14.37	0.01	2.218	3.71	0.00	1.8	98.2	0.0	1.48	0.65	0.81	3.95	2.6	0.003	0.80	0.0	0.04	16.05	0.00	2.126	6.92	0.89	0.7	99.3	0.0	3.44	0.76	0.68	0.86	2.32	10149	958	47	0	42	9	0	logfile
✔	7Ui9	26542	2024-02-15	2022-03-28	3.3	4.81	3.23	2.8	0.004	0.69	0.0	0.05	13.63	0.01	0.850	9.75	0.06	1.9	98.0	0.1	0.62	0.59	0.52	0.82	2.8	0.003	0.63	0.0	0.04	14.86	0.00	2.125	13.05	0.80	3.0	97.0	0.0	1.30	0.52	0.81	0.79	0.72	63137	7857	33	0	0	0	0	logfile
✔	7XDi	33148	2024-02-13	2022-03-27	3.8	3.93	3.63	3.9	0.003	0.71	0.0	0.04	16.85	0.01	0.137	25.89	0.56	4.7	94.6	0.6	0.46	0.58	0.82	1.80	3.9	0.005	0.86	2.0	0.05	17.46	0.01	2.086	15.71	6.42	5.4	94.0	0.6	0.77	1.34	0.58	0.82	1.67	53669	6804	42	0	0	0	0	logfile
✔	7XDF	33146	2024-02-17	2022-03-27	2.72	2.97	2.81	3.1	0.014	0.93	0.0	0.05	14.80	0.01	2.065	12.10	0.00	1.5	98.5	0.0	0.28	0.69	0.84	4.34	3.1	0.003	0.54	0.0	0.04	15.60	0.00	2.127	7.36	1.82	1.1	98.9	0.0	0.81	0.93	0.69	0.85	3.95	17868	2204	8	0	12	0	0	logfile
✔	7XDG	33147	2024-02-17	2022-03-27	2.84	3.51	2.99	3.4	0.014	0.91	0.0	0.05	13.27	0.00	2.160	12.16	0.00	1.5	98.5	0.0	0.40	0.73	0.82	3.75	3.4	0.002	0.47	0.0	0.04	14.13	0.00	2.215	10.21	1.18	1.5	98.5	0.0	0.87	0.25	0.67	0.78	3.28	17836	2204	8	0	12	0	0	logfile
✔	7XDK	33150	2024-02-23	2022-03-27	3.2	3.46	3.27	3.4	0.004	0.57	0.0	0.05	13.49	0.00	2.200	6.88	0.12	4.0	96.0	0.0	-0.52	0.77	0.82	2.56	3.4	0.003	0.66	1.0	0.05	14.89	0.00	2.049	8.75	1.83	4.5	95.5	0.0	-0.36	0.34	0.78	0.86	2.31	39000	4995	30	0	36	0	0	logfile
✘	7XDL	33151	2024-02-23	2022-03-27	3.08	3.34	3.14	3.3	0.005	0.75	0.0	0.06	13.53	0.00	2.195	7.74	0.56	5.1	94.9	0.1	-0.28	0.77	0.83	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38987	4972	30	0	36	0	0	logfile
✔	7XD2	33133	2024-02-20	2022-03-26	3.3	3.54	3.35	3.5	0.014	1.96	87.0	0.14	13.73	0.01	1.416	9.60	0.98	4.9	94.4	0.7	-0.69	0.63	0.61	2.26	3.5	0.007	0.71	1.0	0.05	14.88	0.00	2.045	8.77	1.59	4.7	95.1	0.1	-0.82	0.59	0.75	0.79	2.48	28084	3753	9	0	0	0	0	logfile
✔	7XDA	33140	2024-02-16	2022-03-26	2.98	3.15	3.14	3.1	0.005	0.54	0.0	0.04	16.34	0.00	1.978	4.13	1.85	6.3	93.6	0.1	-3.63	0.66	0.84	3.84	3.1	0.002	0.56	0.0	0.04	16.76	0.00	1.976	4.20	1.97	4.0	95.9	0.1	-0.51	0.62	0.65	0.85	3.82	15729	1071	5	0	0	0	7646	logfile
✔	7XD5	33136	2024-02-14	2022-03-26	2.84	3.32	2.81	3.1	0.003	0.58	0.0	0.03	23.20	0.00	1.864	0.61	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.1	0.004	0.65	0.0	0.04	23.41	0.00	1.948	6.18	0.00	0.0	0.0	0.0	—	1.38	0.89	0.90	—	8714	0	3	406	30	0	0	logfile
✔	7XD6	33137	2024-02-14	2022-03-26	2.84	3.25	2.83	3.0	0.005	0.74	0.0	0.04	23.79	0.00	1.975	1.30	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.1	0.005	0.68	0.0	0.04	23.96	0.00	1.878	7.75	0.00	0.0	0.0	0.0	—	1.32	0.88	0.89	—	9843	0	3	459	29	0	0	logfile
✔	7XDE	33145	2024-02-17	2022-03-26	2.72	3.00	2.86	3.1	0.011	0.82	0.0	0.05	13.60	0.00	2.110	8.62	0.63	1.2	98.8	0.0	0.38	0.68	0.81	3.27	3.1	0.003	0.48	0.0	0.04	15.74	0.00	2.144	7.78	2.25	1.3	98.7	0.0	1.00	1.11	0.65	0.80	2.88	17896	2248	8	0	4	0	0	logfile
✔	7XD7	33138	2024-02-14	2022-03-26	3.02	3.40	—	3.1	0.003	0.61	0.0	0.04	23.14	0.00	1.736	0.77	0.00	0.0	0.0	0.0	—	0.90	0.86	—	3.1	0.007	0.67	0.0	0.04	23.18	0.00	1.877	7.58	0.00	0.0	0.0	0.0	—	2.21	0.92	0.92	—	8693	0	1	405	30	0	0	logfile
✔	7XD0	33131	2024-02-17	2022-03-26	3.48	2.98	—	2.9	0.003	0.57	0.0	0.04	27.04	0.00	2.062	11.16	0.26	3.0	97.0	0.0	1.30	0.82	0.81	1.79	2.9	0.005	0.63	0.0	0.04	27.92	0.00	2.178	9.92	1.83	4.5	95.5	0.0	1.75	0.36	0.83	0.83	1.52	13222	915	12	292	0	0	0	logfile

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