Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UiL	26548	2024-02-23	2022-03-29	4.3	9.74	4.31	8.6	0.004	0.67	0.0	0.04	13.36	0.00	0.667	9.13	0.07	1.2	98.7	0.1	0.35	0.63	0.36	—	8.6	0.003	0.64	0.0	0.04	13.37	0.00	2.115	16.28	0.02	2.8	97.2	0.0	0.17	1.62	0.77	0.64	—	37614	4641	13	0	0	0	0	logfile
✔	7ZDi	14650	2024-02-14	2022-03-29	2.9	3.06	2.82	3.1	0.005	0.93	0.0	0.04	13.22	0.01	2.378	3.63	0.00	0.9	99.1	0.0	1.10	0.64	0.84	5.30	3.1	0.004	0.80	0.0	0.04	14.88	0.00	2.220	4.96	0.25	1.2	98.8	0.0	3.43	0.27	0.69	0.87	4.13	10284	976	38	0	42	0	0	logfile
✔	7UJ0	26559	2024-02-19	2022-03-29	3.26	3.50	—	3.4	0.005	0.83	0.0	0.04	14.41	0.00	2.005	3.09	0.00	0.5	99.5	0.0	-1.04	0.61	0.82	3.29	3.4	0.004	0.60	0.0	0.04	16.87	0.00	1.751	10.49	1.72	3.5	96.5	0.0	-0.01	0.71	0.63	0.86	2.93	76314	4823	20	0	21	0	38308	logfile
✔	7UiC	26543	2024-02-17	2022-03-29	3.7	6.93	3.66	3.1	0.002	0.51	0.0	0.04	13.62	0.00	2.212	9.81	0.00	1.0	99.0	0.0	0.41	0.74	0.59	0.28	3.0	0.002	0.67	0.0	0.04	14.92	0.00	2.124	11.92	0.96	1.9	98.0	0.0	0.89	0.61	0.81	0.71	-0.21	17303	2138	6	0	0	0	0	logfile
✔	7UiM	26549	2024-02-16	2022-03-29	3.1	4.12	3.81	3.6	0.005	0.87	0.0	0.04	24.93	0.01	1.903	9.02	0.00	3.7	96.3	0.0	-1.28	0.67	0.47	0.98	3.6	0.004	0.70	0.0	0.04	25.12	0.00	1.036	26.43	3.81	6.3	93.4	0.3	-0.41	2.81	0.79	0.76	0.57	14772	387	3	541	15	0	0	logfile
✔	7UiU	26553	2024-02-13	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	3.35	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.3	0.004	0.96	0.0	0.04	16.77	0.00	2.227	11.74	3.33	6.0	94.0	0.0	-2.10	1.37	0.28	0.89	2.72	607	85	1	0	0	0	0	logfile
✔	7ZDS	14668	2024-02-14	2022-03-29	3.26	3.40	3.20	3.4	0.005	0.74	0.0	0.04	14.06	0.01	2.017	10.99	0.00	1.9	98.1	0.0	-2.62	0.73	0.88	3.27	3.3	0.003	0.63	0.0	0.04	15.85	0.00	2.222	7.59	2.20	2.0	98.0	0.0	1.17	0.40	0.72	0.88	2.03	8736	1129	2	0	0	0	0	logfile
✔	7ZDK	14652	2024-02-14	2022-03-29	3.01	3.14	2.96	3.1	0.007	0.78	0.0	0.05	16.14	0.00	2.219	7.96	0.00	1.6	98.4	0.0	-1.50	0.76	0.89	3.46	3.1	0.003	0.52	0.0	0.04	15.71	0.00	1.950	6.27	1.70	1.9	98.1	0.0	1.42	0.33	0.72	0.90	2.77	9089	1161	4	0	4	0	0	logfile
✔	7UiG	26545	2024-02-20	2022-03-29	4.3	8.24	4.32	3.9	0.005	0.80	0.0	0.05	12.88	0.01	0.850	11.11	0.09	1.3	98.5	0.1	1.54	0.45	0.44	—	3.9	0.010	0.70	0.0	0.04	12.89	0.00	2.117	17.22	0.00	2.6	97.4	0.0	1.41	0.75	0.58	0.78	—	27580	3390	17	0	0	0	0	logfile
✔	7XE0	33153	2024-02-25	2022-03-29	3.33	3.98	—	3.5	0.004	0.68	0.0	0.05	13.37	0.01	2.201	15.38	0.41	8.4	91.6	0.0	-1.40	0.79	0.76	0.57	3.5	0.003	0.68	0.0	0.04	15.22	0.00	2.158	15.96	2.35	8.8	91.1	0.0	-1.26	0.41	0.79	0.77	0.63	49715	6160	15	0	5	0	0	logfile
✔	7UiZ	26558	2024-02-19	2022-03-29	3.24	3.45	—	3.4	0.004	0.75	0.0	0.05	13.79	0.00	2.014	2.79	0.00	0.1	99.9	0.0	-1.03	0.60	0.81	2.98	3.4	0.003	0.56	0.0	0.04	16.81	0.00	1.840	8.63	1.62	2.7	97.3	0.0	0.42	0.90	0.60	0.85	3.06	76521	4837	20	0	22	0	38390	logfile
✔	7UiX	26556	2024-02-19	2022-03-29	3.24	3.26	—	3.3	0.004	0.79	0.0	0.04	14.39	0.00	2.013	2.99	0.02	0.1	99.9	0.0	-0.81	0.62	0.80	2.80	3.3	0.012	0.84	1.0	0.04	16.88	0.01	1.708	10.37	2.04	3.4	96.6	0.0	0.24	0.80	0.62	0.85	2.91	76307	4820	20	0	23	0	38286	logfile
✔	7UiW	26555	2024-02-18	2022-03-29	3.33	3.27	—	3.3	0.004	0.77	0.0	0.04	14.07	0.00	2.005	2.75	0.02	0.3	99.7	0.0	-0.17	0.59	0.75	2.41	3.3	0.004	0.58	0.0	0.04	16.99	0.00	1.740	10.50	2.22	3.3	96.7	0.0	-0.20	0.86	0.61	0.83	2.44	75891	4792	19	0	17	0	38115	logfile
✔	7UiV	26554	2024-02-18	2022-03-29	3.38	3.40	—	3.4	0.004	0.81	0.0	0.05	15.03	0.00	2.004	2.73	0.00	0.3	99.7	0.0	1.05	0.59	0.77	2.52	3.4	0.003	0.58	0.0	0.04	17.18	0.00	1.811	8.90	1.80	2.4	97.6	0.0	0.51	1.23	0.60	0.83	2.56	76152	4805	20	0	18	0	38252	logfile
✔	7ZDE	14643	2024-02-14	2022-03-29	3.17	3.28	3.06	3.2	0.008	0.78	0.0	0.05	14.80	0.00	2.067	10.89	0.00	2.9	97.1	0.0	-3.00	0.73	0.89	3.55	3.2	0.004	0.98	1.0	0.04	15.47	0.00	2.125	8.96	1.50	2.1	97.9	0.0	0.52	0.37	0.72	0.90	2.49	9014	1159	2	0	2	0	0	logfile
✘	7Uii	26546	2024-02-18	2022-03-29	2.6	2.91	2.65	2.9	0.003	0.61	0.0	0.05	13.58	0.00	2.234	5.76	0.00	5.1	94.9	0.0	-0.77	0.60	0.87	4.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	130944	16926	93	0	186	186	0	logfile
✔	7UiF	26544	2024-02-15	2022-03-29	4.6	5.63	4.34	6.7	0.004	0.69	0.0	0.05	13.63	0.01	0.850	9.76	0.06	1.9	98.0	0.1	0.62	0.48	0.33	—	6.8	0.003	0.80	0.0	0.05	13.37	0.01	2.022	21.04	0.00	3.7	96.3	0.0	-0.31	1.25	0.61	0.63	—	63137	7857	33	0	0	0	0	logfile
✘	7XE4	33154	2024-02-15	2022-03-29	3.4	3.88	—	3.8	0.006	0.86	0.0	0.04	15.21	0.01	2.199	8.78	0.45	10.0	89.6	0.4	-2.45	0.71	0.84	2.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12529	1503	3	0	27	0	0	logfile
✔	7ZCE	14628	2024-02-21	2022-03-28	3.5	3.69	3.48	3.6	0.005	0.70	0.0	0.05	15.54	0.00	2.080	8.45	0.03	8.6	91.4	0.0	-1.09	0.77	0.84	2.13	3.6	0.003	0.61	0.0	0.04	15.45	0.00	2.150	8.95	1.52	8.6	91.4	0.0	-1.06	0.40	0.77	0.85	1.85	29502	3706	21	0	51	0	0	logfile
✔	7Ui9	26542	2024-02-15	2022-03-28	3.3	4.81	3.23	2.8	0.004	0.69	0.0	0.05	13.63	0.01	0.850	9.75	0.06	1.9	98.0	0.1	0.62	0.59	0.52	0.82	2.8	0.003	0.63	0.0	0.04	14.86	0.00	2.125	13.05	0.80	3.0	97.0	0.0	1.30	0.52	0.81	0.79	0.72	63137	7857	33	0	0	0	0	logfile

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