Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XER	33158	2024-02-17	2022-03-31	2.47	2.87	2.81	2.9	0.003	0.74	0.0	0.04	13.07	0.00	2.219	12.08	0.23	5.3	94.5	0.2	-0.04	0.73	0.82	2.14	2.9	0.003	0.60	0.0	0.04	16.16	0.00	2.181	8.09	0.92	3.6	96.4	0.0	1.01	1.51	0.72	0.85	2.02	20084	2456	8	0	4	0	0	logfile
✔	7ZF1	14694	2024-02-14	2022-03-31	4.14	4.39	4.33	4.3	0.005	0.81	0.0	0.04	16.57	0.01	1.299	3.24	0.00	2.7	97.3	0.0	0.76	0.78	0.73	—	4.2	0.003	0.54	0.0	0.03	16.76	0.00	1.889	10.01	0.00	3.2	96.8	0.0	1.66	1.60	0.80	0.76	—	38889	2297	5	54	0	0	19431	logfile
✔	7UK5	26575	2024-02-13	2022-03-31	2.76	3.16	2.85	3.1	0.004	0.58	0.0	0.04	12.96	0.01	2.139	7.69	0.00	3.1	96.9	0.0	1.44	0.62	0.85	3.74	3.1	0.003	0.51	0.0	0.04	14.65	0.00	2.340	7.63	0.95	2.6	97.4	0.0	2.75	0.29	0.53	0.82	3.11	8000	1036	5	0	4	0	0	logfile
✔	7ZEL	14690	2024-02-15	2022-03-31	2.8	2.97	2.82	3.0	0.003	0.57	0.0	0.04	12.71	0.00	2.126	4.89	0.00	1.6	98.4	0.0	0.27	0.70	0.82	4.19	3.0	0.005	0.60	0.0	0.04	15.81	0.00	2.099	6.46	1.08	2.3	97.7	0.0	1.09	1.15	0.69	0.84	3.75	13334	1654	4	0	4	0	0	logfile
✔	7ZE3	14682	2024-02-14	2022-03-30	2.7	2.61	2.65	2.7	0.014	4.25	0.0	0.04	16.34	0.01	2.231	3.86	0.00	1.3	98.7	0.0	0.75	0.69	0.85	4.12	2.7	0.004	2.15	0.0	0.04	17.77	0.00	1.836	6.35	0.98	2.0	98.0	0.0	2.29	0.46	0.71	0.87	2.97	10285	967	54	0	42	37	0	logfile
✔	7ZE8	14685	2024-02-14	2022-03-30	3.6	3.53	3.49	3.6	0.005	0.94	0.0	0.04	14.05	0.01	2.203	2.59	0.00	1.8	98.2	0.0	0.49	0.55	0.80	4.51	3.6	0.003	0.67	0.0	0.03	15.02	0.00	2.054	5.47	0.51	2.4	97.6	0.0	3.36	1.00	0.67	0.84	2.80	10068	940	38	0	42	0	0	logfile
✔	7ZDZ	14678	2024-02-14	2022-03-30	4.3	4.37	4.35	4.3	0.003	0.86	0.0	0.05	15.05	0.00	2.192	12.57	0.35	11.1	88.6	0.3	-1.61	0.64	0.70	—	4.3	0.003	0.75	0.0	0.05	14.71	0.00	2.205	14.26	0.00	12.8	87.0	0.2	-1.92	1.78	0.64	0.72	—	10369	1292	6	0	3	0	0	logfile
✔	7ZE5	14684	2024-02-14	2022-03-30	2.94	3.17	2.90	3.1	0.005	0.74	0.0	0.04	14.94	0.00	1.901	8.03	0.00	1.7	98.3	0.0	-0.78	0.76	0.89	4.02	3.1	0.003	0.54	0.0	0.04	16.21	0.00	1.980	6.66	1.27	1.6	98.4	0.0	2.07	0.39	0.77	0.91	3.56	9077	1159	4	0	4	0	0	logfile
✔	7XEC	33155	2024-02-14	2022-03-30	3.34	3.59	—	3.6	0.009	1.43	3.0	0.09	16.44	0.01	2.153	5.98	3.51	9.6	90.2	0.3	-4.80	0.58	0.81	1.94	3.6	0.003	0.69	0.0	0.04	16.88	0.00	2.281	10.34	2.41	6.8	93.2	0.0	-0.90	1.01	0.56	0.81	1.36	9485	1186	3	0	1	0	0	logfile
✔	7UJA	26562	2024-02-18	2022-03-30	3.7	3.48	3.68	3.8	0.003	0.58	0.0	0.04	15.09	0.00	2.114	7.74	0.13	5.6	94.4	0.0	-2.29	0.69	0.82	2.28	3.7	0.005	0.68	0.0	0.05	16.13	0.00	2.175	9.12	4.82	7.9	92.1	0.0	-1.88	0.32	0.69	0.82	1.86	20748	2694	21	0	3	0	0	logfile
✔	7ZDK	14652	2024-02-14	2022-03-29	3.01	3.14	2.96	3.1	0.007	0.78	0.0	0.05	16.14	0.00	2.219	7.96	0.00	1.6	98.4	0.0	-1.50	0.76	0.89	3.46	3.1	0.003	0.52	0.0	0.04	15.71	0.00	1.950	6.27	1.70	1.9	98.1	0.0	1.42	0.33	0.72	0.90	2.77	9089	1161	4	0	4	0	0	logfile
✔	7ZDS	14668	2024-02-14	2022-03-29	3.26	3.40	3.20	3.4	0.005	0.74	0.0	0.04	14.06	0.01	2.017	10.99	0.00	1.9	98.1	0.0	-2.62	0.73	0.88	3.27	3.3	0.003	0.63	0.0	0.04	15.85	0.00	2.222	7.59	2.20	2.0	98.0	0.0	1.17	0.40	0.72	0.88	2.03	8736	1129	2	0	0	0	0	logfile
✔	7UiG	26545	2024-02-20	2022-03-29	4.3	8.24	4.32	3.9	0.005	0.80	0.0	0.05	12.88	0.01	0.850	11.11	0.09	1.3	98.5	0.1	1.54	0.45	0.44	—	3.9	0.010	0.70	0.0	0.04	12.89	0.00	2.117	17.22	0.00	2.6	97.4	0.0	1.41	0.75	0.58	0.78	—	27580	3390	17	0	0	0	0	logfile
✔	7XE0	33153	2024-02-25	2022-03-29	3.33	3.98	—	3.5	0.004	0.68	0.0	0.05	13.37	0.01	2.201	15.38	0.41	8.4	91.6	0.0	-1.40	0.79	0.76	0.57	3.5	0.003	0.68	0.0	0.04	15.22	0.00	2.158	15.96	2.35	8.8	91.1	0.0	-1.26	0.41	0.79	0.77	0.63	49715	6160	15	0	5	0	0	logfile
✔	7ZDT	14669	2024-02-14	2022-03-29	2.71	2.89	2.68	2.9	0.005	0.66	0.0	0.04	13.92	0.00	1.945	6.38	0.00	1.3	98.7	0.0	-0.81	0.76	0.90	3.85	2.9	0.004	0.56	0.0	0.04	15.91	0.00	1.966	5.06	2.24	1.7	98.3	0.0	2.21	0.35	0.74	0.91	3.47	9003	1155	3	0	2	0	0	logfile
✔	7UiF	26544	2024-02-15	2022-03-29	4.6	5.63	4.34	6.7	0.004	0.69	0.0	0.05	13.63	0.01	0.850	9.76	0.06	1.9	98.0	0.1	0.62	0.48	0.33	—	6.8	0.003	0.80	0.0	0.05	13.37	0.01	2.022	21.04	0.00	3.7	96.3	0.0	-0.31	1.25	0.61	0.63	—	63137	7857	33	0	0	0	0	logfile
✔	7ZDE	14643	2024-02-14	2022-03-29	3.17	3.28	3.06	3.2	0.008	0.78	0.0	0.05	14.80	0.00	2.067	10.89	0.00	2.9	97.1	0.0	-3.00	0.73	0.89	3.55	3.2	0.004	0.98	1.0	0.04	15.47	0.00	2.125	8.96	1.50	2.1	97.9	0.0	0.52	0.37	0.72	0.90	2.49	9014	1159	2	0	2	0	0	logfile
✔	7ZCW	14634	2024-02-24	2022-03-29	3.6	3.49	3.11	3.5	0.008	1.01	0.0	0.05	17.26	0.01	1.906	3.67	0.21	3.9	96.1	0.0	-1.14	0.68	0.79	2.76	3.5	0.006	0.76	2.0	0.04	16.94	0.00	1.777	7.95	1.81	4.1	95.9	0.0	-0.79	0.41	0.69	0.80	2.87	44316	2839	14	0	12	0	21746	logfile
✔	7UiX	26556	2024-02-19	2022-03-29	3.24	3.26	—	3.3	0.004	0.79	0.0	0.04	14.39	0.00	2.013	2.99	0.02	0.1	99.9	0.0	-0.81	0.62	0.80	2.80	3.3	0.012	0.84	1.0	0.04	16.88	0.01	1.708	10.37	2.04	3.4	96.6	0.0	0.24	0.80	0.62	0.85	2.91	76307	4820	20	0	23	0	38286	logfile
✔	7ZDA	14639	2024-02-14	2022-03-29	3.17	3.35	3.16	3.3	0.006	0.77	0.0	0.05	15.05	0.01	1.941	8.77	0.11	1.7	98.3	0.0	-2.09	0.75	0.84	3.16	3.3	0.004	0.69	0.0	0.04	16.79	0.00	1.917	8.28	1.92	1.7	98.3	0.0	0.84	1.00	0.74	0.88	2.73	9052	1159	4	0	5	0	0	logfile

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