Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XFM	33176	2024-02-15	2022-04-01	3.1	2.96	2.97	3.1	0.007	0.85	0.0	0.07	26.71	0.01	2.322	2.91	0.13	2.8	97.2	0.0	-1.66	0.70	0.75	3.07	3.1	0.005	0.66	0.0	0.06	27.38	0.00	2.220	7.56	2.43	3.0	97.0	0.0	0.80	0.56	0.78	0.84	2.79	12914	946	11	266	0	0	0	logfile
✔	7UKJ	26582	2024-02-16	2022-04-01	3.6	4.01	—	3.7	0.003	0.61	0.0	0.05	14.53	0.00	2.183	13.02	1.78	12.8	87.2	0.0	-2.80	0.74	0.85	2.36	3.7	0.002	0.55	0.0	0.05	15.24	0.00	2.226	11.60	2.48	10.9	89.1	0.0	-2.69	0.21	0.74	0.84	2.05	14196	1862	3	0	0	0	0	logfile
✔	7UKF	26579	2024-02-13	2022-04-01	3.02	3.32	3.06	3.3	0.004	0.61	0.0	0.04	11.50	0.00	2.290	9.17	0.00	2.3	97.7	0.0	1.20	0.58	0.83	3.02	3.3	0.003	0.51	0.0	0.04	14.29	0.00	2.182	8.80	1.30	3.1	96.9	0.0	2.00	0.31	0.58	0.84	2.90	8005	1036	5	0	5	0	0	logfile
✔	7UKD	26577	2024-02-13	2022-04-01	2.88	3.39	3.14	3.3	0.004	0.62	0.0	0.04	12.08	0.00	2.195	9.18	0.00	1.9	98.1	0.0	1.30	0.58	0.83	2.72	3.3	0.003	0.57	0.0	0.04	14.98	0.00	2.138	8.37	1.66	1.9	98.1	0.0	2.24	0.91	0.56	0.84	2.96	8000	1036	5	0	4	0	0	logfile
✔	7XFJ	33174	2024-02-15	2022-04-01	3.0	2.68	3.04	3.0	0.006	0.78	0.0	0.05	26.18	0.01	2.323	2.38	0.13	3.3	96.7	0.0	-1.57	0.67	0.74	2.31	3.0	0.004	0.58	0.0	0.04	27.15	0.00	2.226	7.70	3.35	2.6	97.4	0.0	1.11	0.58	0.74	0.81	1.50	12805	943	11	262	0	0	0	logfile
✔	7UKC	26576	2024-02-13	2022-04-01	3.0	3.39	2.98	3.3	0.006	0.67	0.0	0.04	12.54	0.00	2.127	8.37	0.24	3.1	96.9	0.0	0.47	0.66	0.87	3.11	3.3	0.004	0.58	0.0	0.04	15.50	0.00	2.206	8.31	1.66	2.7	97.3	0.0	1.99	0.37	0.65	0.87	2.74	8000	1036	6	0	4	0	0	logfile
✔	7XF5	33169	2024-02-14	2022-04-01	3.9	3.53	3.33	3.5	0.003	0.61	0.0	0.04	14.14	0.00	2.222	8.54	0.58	2.3	97.6	0.1	1.11	0.51	0.67	1.39	3.5	0.003	0.66	0.0	0.04	16.43	0.00	2.107	10.34	2.43	3.3	96.7	0.0	1.55	1.79	0.55	0.72	1.42	9640	1239	2	0	0	0	0	logfile
✔	7UKL	26583	2024-02-21	2022-04-01	3.09	3.85	3.21	3.6	0.005	0.86	3.0	0.06	12.69	0.01	2.139	2.45	0.09	3.5	96.5	0.0	-0.53	0.81	0.79	3.63	3.6	0.007	0.68	0.0	0.05	14.24	0.00	2.184	8.07	2.01	4.2	95.8	0.0	-0.02	1.00	0.85	0.89	3.35	30234	3795	12	0	48	0	0	logfile
✔	7UKM	26584	2024-02-21	2022-04-01	3.03	3.70	3.13	3.4	0.005	0.76	0.0	0.05	12.65	0.00	2.223	1.41	0.00	3.2	96.8	0.0	0.17	0.83	0.87	3.96	3.4	0.006	0.64	0.0	0.05	13.71	0.00	2.146	7.76	1.82	4.2	95.8	0.0	0.31	0.93	0.84	0.90	3.58	30145	3771	12	0	47	0	0	logfile
✔	7UKG	26580	2024-02-14	2022-04-01	2.24	2.56	2.27	2.5	0.006	0.58	0.0	0.04	13.16	0.00	2.208	6.08	0.00	1.8	98.2	0.0	2.95	0.68	0.88	4.70	2.5	0.002	0.45	0.0	0.04	13.89	0.00	2.342	6.20	0.32	1.8	98.2	0.0	4.09	0.23	0.69	0.89	4.55	8652	1128	10	0	4	0	0	logfile
✔	7ZFW	14704	2024-02-15	2022-04-01	3.8	4.62	3.46	3.0	0.006	0.83	0.0	0.05	26.57	0.03	2.266	2.77	0.00	0.0	0.0	0.0	—	0.32	0.81	—	3.1	0.009	0.93	0.0	0.05	27.81	0.01	1.930	40.88	0.00	0.0	0.0	0.0	—	3.56	0.33	0.85	—	13188	0	1	615	0	0	0	logfile
✔	7ZEL	14690	2024-02-15	2022-03-31	2.8	2.97	2.82	3.0	0.003	0.57	0.0	0.04	12.71	0.00	2.126	4.89	0.00	1.6	98.4	0.0	0.27	0.70	0.82	4.19	3.0	0.005	0.60	0.0	0.04	15.81	0.00	2.099	6.46	1.08	2.3	97.7	0.0	1.09	1.15	0.69	0.84	3.75	13334	1654	4	0	4	0	0	logfile
✔	7ZF2	14696	2024-02-19	2022-03-31	3.86	3.97	3.73	3.9	0.007	0.62	0.0	0.04	13.32	0.00	2.162	10.43	5.77	5.7	94.3	0.0	0.01	0.78	0.86	1.96	3.9	0.006	0.66	0.0	0.04	15.19	0.00	2.157	11.44	5.38	4.9	95.1	0.0	0.25	0.35	0.79	0.86	1.58	23822	3068	7	0	3	0	0	logfile
✔	7ZES	14692	2024-02-15	2022-03-31	3.1	3.32	3.11	3.4	0.005	0.61	0.0	0.04	13.69	0.01	1.966	5.90	0.00	2.3	97.7	0.0	0.35	0.75	0.82	3.80	3.4	0.003	0.56	0.0	0.04	15.84	0.00	1.968	6.97	1.42	3.0	97.0	0.0	1.08	0.42	0.75	0.84	3.21	13538	1654	6	10	4	0	0	logfile
✔	7UK5	26575	2024-02-13	2022-03-31	2.76	3.16	2.85	3.1	0.004	0.58	0.0	0.04	12.96	0.01	2.139	7.69	0.00	3.1	96.9	0.0	1.44	0.62	0.85	3.74	3.1	0.003	0.51	0.0	0.04	14.65	0.00	2.340	7.63	0.95	2.6	97.4	0.0	2.75	0.29	0.53	0.82	3.11	8000	1036	5	0	4	0	0	logfile
✔	7XER	33158	2024-02-17	2022-03-31	2.47	2.87	2.81	2.9	0.003	0.74	0.0	0.04	13.07	0.00	2.219	12.08	0.23	5.3	94.5	0.2	-0.04	0.73	0.82	2.14	2.9	0.003	0.60	0.0	0.04	16.16	0.00	2.181	8.09	0.92	3.6	96.4	0.0	1.01	1.51	0.72	0.85	2.02	20084	2456	8	0	4	0	0	logfile
✔	7XEo	33157	2024-02-17	2022-03-31	2.89	3.27	3.13	3.3	0.003	0.70	4.0	0.05	12.94	0.00	2.214	13.56	0.74	4.3	94.7	1.0	0.03	0.75	0.82	2.38	3.3	0.003	0.64	0.0	0.04	15.65	0.00	2.179	10.08	2.90	5.4	94.2	0.3	1.17	0.45	0.76	0.84	2.50	19980	2456	4	0	0	0	0	logfile
✔	7XEW	33161	2024-02-17	2022-03-31	2.59	3.02	2.88	3.0	0.003	0.70	0.0	0.04	13.28	0.01	2.210	10.97	1.10	5.5	94.0	0.5	0.26	0.75	0.85	2.67	3.0	0.003	0.68	0.0	0.04	16.01	0.00	2.268	8.04	3.72	4.3	95.5	0.2	1.02	0.45	0.73	0.86	2.36	19988	2456	4	0	0	0	0	logfile
✔	7ZF1	14694	2024-02-14	2022-03-31	4.14	4.39	4.33	4.3	0.005	0.81	0.0	0.04	16.57	0.01	1.299	3.24	0.00	2.7	97.3	0.0	0.76	0.78	0.73	—	4.2	0.003	0.54	0.0	0.03	16.76	0.00	1.889	10.01	0.00	3.2	96.8	0.0	1.66	1.60	0.80	0.76	—	38889	2297	5	54	0	0	19431	logfile
✔	7ZEP	14691	2024-02-15	2022-03-31	3.2	3.43	3.22	3.5	0.002	0.48	0.0	0.04	14.25	0.00	2.231	5.23	0.00	1.7	98.3	0.0	0.22	0.71	0.80	3.10	3.4	0.003	0.52	0.0	0.04	15.98	0.00	2.192	6.54	1.83	2.6	97.4	0.0	1.28	1.12	0.72	0.82	2.54	13324	1654	4	0	2	0	0	logfile

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