Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7X22	32955	2024-02-15	2022-02-25	3.0	2.35	2.94	2.9	0.005	1.15	0.0	0.04	14.02	0.00	1.926	25.96	0.00	3.5	96.5	0.0	1.84	0.42	0.71	3.12	3.0	0.003	0.80	0.0	0.04	16.31	0.00	1.897	8.12	2.94	4.2	95.7	0.1	0.61	0.49	0.57	0.81	3.09	10257	1263	5	0	14	1	0	logfile
✔	7X28	32961	2024-02-23	2022-02-25	2.49	2.72	—	1.8	0.013	1.52	5.0	0.11	13.24	0.00	1.606	7.72	7.98	2.7	97.0	0.2	2.21	0.57	0.40	0.90	1.8	0.003	0.78	0.0	0.04	15.05	0.00	2.117	13.40	2.06	3.9	96.0	0.1	-0.10	1.76	0.82	0.79	1.94	31583	4119	7	0	0	0	0	logfile
✔	7Z24	14457	2024-02-14	2022-02-25	3.32	2.74	3.27	3.3	0.008	1.04	2.0	0.08	18.28	0.02	2.387	7.61	2.07	2.8	97.2	0.0	-0.18	0.57	0.71	2.96	3.3	0.004	0.73	0.0	0.04	19.37	0.01	2.095	7.68	3.28	2.3	97.7	0.0	-0.07	1.03	0.57	0.74	2.66	8303	929	4	36	1	0	0	logfile
✔	7X26	32959	2024-02-13	2022-02-25	3.685	3.39	—	3.9	0.011	1.46	1.0	0.09	14.53	0.01	2.186	10.90	9.27	16.2	81.1	2.7	-3.21	0.68	0.74	2.38	3.9	0.005	0.80	0.0	0.05	16.28	0.00	2.090	13.20	5.45	12.0	87.6	0.5	-2.36	1.67	0.71	0.77	2.02	4828	641	3	0	0	0	0	logfile
✔	7X25	32958	2024-02-24	2022-02-25	2.49	2.74	—	2.8	0.008	1.08	2.0	0.06	17.29	0.00	1.050	8.51	9.22	10.3	88.6	1.1	-1.98	0.59	0.32	0.12	1.8	0.006	0.91	1.0	0.05	17.06	0.01	2.044	17.10	2.59	9.2	90.6	0.2	-1.87	1.82	0.83	0.76	1.81	37110	4844	9	0	0	0	0	logfile
✔	7X29	32962	2024-02-23	2022-02-25	2.49	2.72	—	1.8	0.014	1.76	19.0	0.11	13.58	0.00	1.135	7.42	8.77	2.7	96.7	0.6	1.84	0.82	0.73	2.26	1.9	0.004	0.72	2.0	0.04	15.05	0.00	2.145	9.03	3.47	4.4	95.4	0.2	-0.17	1.73	0.88	0.86	2.94	32453	4230	7	0	0	0	0	logfile
✔	7X2F	32966	2024-02-15	2022-02-25	3.0	3.70	—	3.6	0.006	0.83	2.0	0.05	12.87	0.01	2.164	13.36	0.11	3.2	96.8	0.0	-0.87	0.58	0.73	2.55	3.6	0.003	0.56	0.0	0.04	15.43	0.00	2.132	8.05	1.82	2.4	97.6	0.0	0.60	0.44	0.52	0.69	2.19	8249	1036	6	0	4	0	0	logfile
✔	7X21	32954	2024-02-14	2022-02-25	2.8	2.23	2.65	2.6	0.005	1.15	0.0	0.05	14.86	0.01	1.943	7.40	0.00	4.0	96.0	0.0	0.45	0.58	0.79	3.97	2.6	0.003	0.81	0.0	0.04	16.76	0.00	1.995	7.11	1.75	3.7	96.3	0.0	0.60	0.31	0.60	0.82	3.51	10167	1263	5	0	10	18	0	logfile
✔	7U32	26322	2024-02-21	2022-02-25	3.46	3.64	3.45	3.6	0.002	0.51	0.0	0.04	14.74	0.00	2.170	7.72	0.00	2.5	97.5	0.0	0.75	0.56	0.48	1.42	3.5	0.002	0.56	0.0	0.04	17.80	0.00	2.121	9.17	1.57	2.5	97.4	0.1	0.68	0.90	0.72	0.73	1.39	32150	3802	32	64	14	0	0	logfile
✔	7X23	32956	2024-02-14	2022-02-25	3.2	2.34	3.00	3.0	0.004	0.59	0.0	0.04	13.25	0.00	2.232	9.24	0.00	2.9	97.1	0.0	1.28	0.53	0.64	1.83	3.0	0.003	0.54	0.0	0.04	15.31	0.00	2.106	9.54	1.56	2.9	97.1	0.0	0.91	1.00	0.56	0.75	1.80	9976	1262	5	0	5	7	0	logfile
✔	7X2C	32964	2024-02-15	2022-02-25	3.2	3.88	—	3.8	0.006	0.71	0.0	0.05	13.49	0.00	2.102	9.59	0.48	2.0	98.0	0.0	0.97	0.58	0.72	1.80	3.8	0.003	0.57	0.0	0.04	15.43	0.00	2.115	10.68	2.30	2.2	97.8	0.0	0.94	0.37	0.58	0.72	1.09	7953	1031	6	0	3	0	0	logfile
✔	7X2D	32965	2024-02-15	2022-02-25	3.3	3.43	—	3.5	0.005	0.85	1.0	0.05	14.43	0.01	1.860	12.03	0.57	3.0	97.0	0.0	-0.46	0.64	0.79	2.37	3.5	0.003	0.55	0.0	0.04	15.92	0.00	2.112	8.59	3.07	2.7	97.3	0.0	1.21	1.18	0.64	0.82	2.04	8203	1032	6	0	2	0	0	logfile
✔	7X1Z	32953	2024-02-19	2022-02-25	3.3	3.65	3.29	3.5	0.003	0.76	0.0	0.05	17.10	0.00	2.095	5.74	0.53	6.4	93.4	0.2	-2.63	0.82	0.84	2.74	3.5	0.004	0.57	0.0	0.04	17.19	0.00	1.923	9.78	2.06	7.6	92.2	0.1	-1.47	0.42	0.80	0.86	2.82	23304	2904	12	0	24	0	0	logfile
✔	7Z23	14456	2024-02-14	2022-02-25	3.98	5.32	3.97	6.5	0.004	0.92	0.0	0.05	14.00	0.01	2.280	18.41	0.00	4.4	95.6	0.0	-0.34	0.64	0.78	0.83	4.4	0.004	1.06	0.0	0.05	16.92	0.01	2.137	33.87	1.67	4.8	95.2	0.0	0.73	3.64	0.66	0.82	0.83	9246	1134	6	0	0	0	0	logfile
✔	7Z1M	14448	2024-02-24	2022-02-24	3.4	3.57	3.50	3.5	0.004	0.69	0.0	0.05	15.31	0.00	2.100	4.76	0.00	3.3	96.7	0.0	-0.32	0.88	0.84	2.45	3.5	0.003	0.55	0.0	0.04	16.52	0.00	2.024	7.93	1.10	3.0	96.9	0.0	0.45	0.29	0.89	0.86	2.15	42122	5153	26	53	10	0	0	logfile
✘	7Z18	14444	2024-02-23	2022-02-24	1.98	2.40	2.04	2.3	0.008	0.94	0.0	0.06	15.45	0.01	1.726	3.36	1.19	1.9	98.1	0.0	1.45	0.79	0.82	5.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37659	2432	18	0	10	2	18660	logfile
✘	7Z17	14443	2024-02-23	2022-02-24	2.57	2.96	2.68	2.9	0.005	0.53	0.0	0.04	10.98	0.00	1.726	6.80	0.84	2.9	97.1	0.0	1.01	0.72	0.77	3.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37592	2432	14	0	5	0	18669	logfile
✔	7Z1L	14447	2024-02-24	2022-02-24	2.8	2.35	2.84	2.2	0.003	0.65	0.0	0.05	13.55	0.00	2.079	4.15	0.02	2.8	97.2	0.0	-0.22	0.83	0.81	3.45	2.2	0.010	0.60	0.0	0.05	15.66	0.00	1.964	6.63	1.56	3.2	96.8	0.0	0.38	0.29	0.84	0.83	3.27	42330	5156	26	63	10	0	0	logfile
✔	7U2o	26317	2024-02-16	2022-02-24	3.1	3.39	—	3.3	0.007	0.84	0.0	0.05	13.06	0.00	2.101	37.92	0.00	6.5	93.5	0.0	-4.77	0.56	0.82	4.39	3.3	0.004	0.79	0.0	0.05	15.08	0.00	2.147	13.39	4.17	4.3	95.7	0.0	-0.54	0.76	0.54	0.82	3.41	14075	1730	15	0	20	0	0	logfile
✔	7U2N	26316	2024-02-16	2022-02-24	2.8	3.30	—	3.4	0.007	0.80	0.0	0.05	12.41	0.00	2.195	23.96	0.00	8.6	91.4	0.0	-4.23	0.52	0.81	5.21	3.3	0.003	0.75	0.0	0.04	14.91	0.00	2.170	11.52	3.89	5.1	94.9	0.0	-0.60	1.09	0.47	0.79	3.75	14080	1725	15	0	20	0	0	logfile

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