Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7X2A	32963	2024-02-21	2022-02-25	2.49	2.71	—	1.8	0.013	1.51	6.0	0.11	12.93	0.00	1.682	6.97	6.68	2.2	97.6	0.2	2.33	0.57	0.42	1.04	1.8	0.004	0.81	0.0	0.05	15.44	0.00	2.070	14.39	1.86	3.9	96.0	0.1	-0.33	2.15	0.83	0.81	2.04	26800	3486	5	0	0	0	0	logfile
✔	7X21	32954	2024-02-14	2022-02-25	2.8	2.23	2.65	2.6	0.005	1.15	0.0	0.05	14.86	0.01	1.943	7.40	0.00	4.0	96.0	0.0	0.45	0.58	0.79	3.97	2.6	0.003	0.81	0.0	0.04	16.76	0.00	1.995	7.11	1.75	3.7	96.3	0.0	0.60	0.31	0.60	0.82	3.51	10167	1263	5	0	10	18	0	logfile
✔	7X1Y	32952	2024-02-18	2022-02-25	3.3	3.50	3.29	3.4	0.006	0.85	2.0	0.05	16.19	0.01	1.293	4.15	0.52	8.5	91.3	0.2	-1.68	0.83	0.88	4.25	3.4	0.006	0.62	0.0	0.04	15.92	0.00	1.883	6.91	1.59	8.2	91.7	0.1	-0.37	0.78	0.81	0.90	3.49	22032	2748	12	0	24	0	0	logfile
✔	7U2X	26321	2024-02-17	2022-02-25	4.1	4.25	—	4.2	0.005	0.65	0.0	0.04	13.56	0.01	2.118	7.47	0.81	4.5	95.5	0.0	-0.17	0.46	0.78	—	4.2	0.006	0.71	0.0	0.05	13.70	0.00	2.109	10.49	0.06	5.2	94.8	0.0	0.35	0.55	0.48	0.79	—	19480	2753	10	0	16	0	0	logfile
✔	7U32	26322	2024-02-21	2022-02-25	3.46	3.64	3.45	3.6	0.002	0.51	0.0	0.04	14.74	0.00	2.170	7.72	0.00	2.5	97.5	0.0	0.75	0.56	0.48	1.42	3.5	0.002	0.56	0.0	0.04	17.80	0.00	2.121	9.17	1.57	2.5	97.4	0.1	0.68	0.90	0.72	0.73	1.39	32150	3802	32	64	14	0	0	logfile
✔	7X1Z	32953	2024-02-19	2022-02-25	3.3	3.65	3.29	3.5	0.003	0.76	0.0	0.05	17.10	0.00	2.095	5.74	0.53	6.4	93.4	0.2	-2.63	0.82	0.84	2.74	3.5	0.004	0.57	0.0	0.04	17.19	0.00	1.923	9.78	2.06	7.6	92.2	0.1	-1.47	0.42	0.80	0.86	2.82	23304	2904	12	0	24	0	0	logfile
✔	7X2F	32966	2024-02-15	2022-02-25	3.0	3.70	—	3.6	0.006	0.83	2.0	0.05	12.87	0.01	2.164	13.36	0.11	3.2	96.8	0.0	-0.87	0.58	0.73	2.55	3.6	0.003	0.56	0.0	0.04	15.43	0.00	2.132	8.05	1.82	2.4	97.6	0.0	0.60	0.44	0.52	0.69	2.19	8249	1036	6	0	4	0	0	logfile
✔	7X26	32959	2024-02-13	2022-02-25	3.685	3.39	—	3.9	0.011	1.46	1.0	0.09	14.53	0.01	2.186	10.90	9.27	16.2	81.1	2.7	-3.21	0.68	0.74	2.38	3.9	0.005	0.80	0.0	0.05	16.28	0.00	2.090	13.20	5.45	12.0	87.6	0.5	-2.36	1.67	0.71	0.77	2.02	4828	641	3	0	0	0	0	logfile
✔	7X23	32956	2024-02-14	2022-02-25	3.2	2.34	3.00	3.0	0.004	0.59	0.0	0.04	13.25	0.00	2.232	9.24	0.00	2.9	97.1	0.0	1.28	0.53	0.64	1.83	3.0	0.003	0.54	0.0	0.04	15.31	0.00	2.106	9.54	1.56	2.9	97.1	0.0	0.91	1.00	0.56	0.75	1.80	9976	1262	5	0	5	7	0	logfile
✔	7X2D	32965	2024-02-15	2022-02-25	3.3	3.43	—	3.5	0.005	0.85	1.0	0.05	14.43	0.01	1.860	12.03	0.57	3.0	97.0	0.0	-0.46	0.64	0.79	2.37	3.5	0.003	0.55	0.0	0.04	15.92	0.00	2.112	8.59	3.07	2.7	97.3	0.0	1.21	1.18	0.64	0.82	2.04	8203	1032	6	0	2	0	0	logfile
✔	7X27	32960	2024-02-18	2022-02-25	2.49	2.92	2.58	2.7	0.004	0.75	0.0	0.04	18.74	0.00	1.052	7.39	9.19	6.8	93.2	0.0	-1.20	0.84	0.87	3.07	2.7	0.004	0.62	0.0	0.04	17.73	0.00	2.188	6.14	2.48	5.8	94.2	0.0	-0.20	1.15	0.83	0.88	3.32	22770	2949	3	0	0	0	0	logfile
✔	7Z22	14455	2024-02-17	2022-02-25	2.95	3.65	3.03	3.3	0.003	0.51	0.0	0.04	11.34	0.00	2.198	6.76	0.00	1.8	98.2	0.0	2.55	0.53	0.47	1.52	3.4	0.003	0.86	0.0	0.04	16.50	0.00	2.238	10.98	3.38	1.8	98.2	0.0	2.74	1.81	0.70	0.88	2.87	18492	2268	12	0	0	0	0	logfile
✔	7Z1T	14452	2024-02-17	2022-02-25	2.26	2.85	2.32	2.6	0.003	0.55	0.0	0.03	15.04	0.00	2.163	9.13	0.00	1.1	98.9	0.0	3.21	0.75	0.87	2.74	2.6	0.002	0.48	0.0	0.03	15.67	0.00	2.222	5.31	1.72	1.1	98.9	0.0	3.60	1.30	0.67	0.91	3.27	18492	2268	12	0	0	0	0	logfile
✔	7Z1Z	14453	2024-02-22	2022-02-25	3.5	2.62	3.61	1.8	0.002	0.51	0.0	0.04	15.20	0.00	2.224	7.50	0.00	2.4	97.6	0.0	0.26	0.64	0.65	1.09	1.7	0.005	0.80	2.0	0.04	18.09	0.00	1.797	15.18	2.71	3.5	96.5	0.0	0.25	0.67	0.67	0.68	1.56	35605	4031	36	140	12	0	0	logfile
✔	7Z19	14445	2024-02-22	2022-02-24	2.57	3.23	2.64	3.0	0.005	0.62	0.0	0.04	13.36	0.00	2.000	7.08	0.28	2.6	97.4	0.0	1.13	0.78	0.88	4.29	3.0	0.003	0.49	0.0	0.04	14.86	0.00	2.025	7.02	0.28	2.5	97.5	0.0	1.57	0.31	0.77	0.88	4.27	34105	2174	21	0	6	477	16717	logfile
✘	7Z17	14443	2024-02-23	2022-02-24	2.57	2.96	2.68	2.9	0.005	0.53	0.0	0.04	10.98	0.00	1.726	6.80	0.84	2.9	97.1	0.0	1.01	0.72	0.77	3.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37592	2432	14	0	5	0	18669	logfile
✔	7X1M	32944	2024-02-16	2022-02-24	2.74	3.01	—	3.0	0.005	0.88	0.0	0.05	12.81	0.01	2.195	6.56	0.18	7.8	92.0	0.2	-1.86	0.66	0.82	3.95	3.0	0.005	0.71	0.0	0.05	15.97	0.01	2.084	7.79	3.64	7.8	92.1	0.2	-1.30	0.35	0.66	0.85	3.50	9908	1291	8	0	3	0	0	logfile
✘	7Z15	14441	2024-02-24	2022-02-24	1.93	2.40	1.98	2.3	0.012	1.01	9.0	0.06	15.88	0.01	1.723	3.87	0.83	1.6	98.4	0.0	1.32	0.83	0.86	6.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	46112	2888	32	0	16	1171	22357	logfile
✔	7X1U	32950	2024-02-13	2022-02-24	3.19	3.42	—	3.4	0.008	1.03	2.0	0.16	13.42	0.01	2.166	6.24	0.46	7.7	92.2	0.1	-5.61	0.60	0.69	2.22	3.4	0.003	0.69	0.0	0.04	14.98	0.00	2.122	12.27	3.36	4.6	95.3	0.1	-2.72	0.50	0.60	0.69	1.53	7483	1082	6	0	1	0	0	logfile
✔	7Z0Z	14435	2024-02-14	2022-02-24	2.68	2.92	2.79	2.8	0.006	0.72	6.0	0.05	14.67	0.00	2.092	7.37	0.54	1.9	98.0	0.2	0.45	0.74	0.86	4.83	2.8	0.003	0.61	1.0	0.04	16.52	0.00	2.174	4.94	1.42	2.0	97.9	0.2	1.28	0.92	0.77	0.90	4.39	29466	3510	6	0	0	0	0	logfile

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