Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7X1U	32950	2024-02-13	2022-02-24	3.19	3.42	—	3.4	0.008	1.03	2.0	0.16	13.42	0.01	2.166	6.24	0.46	7.7	92.2	0.1	-5.61	0.60	0.69	2.22	3.4	0.003	0.69	0.0	0.04	14.98	0.00	2.122	12.27	3.36	4.6	95.3	0.1	-2.72	0.50	0.60	0.69	1.53	7483	1082	6	0	1	0	0	logfile
✔	7X1M	32944	2024-02-16	2022-02-24	2.74	3.01	—	3.0	0.005	0.88	0.0	0.05	12.81	0.01	2.195	6.56	0.18	7.8	92.0	0.2	-1.86	0.66	0.82	3.95	3.0	0.005	0.71	0.0	0.05	15.97	0.01	2.084	7.79	3.64	7.8	92.1	0.2	-1.30	0.35	0.66	0.85	3.50	9908	1291	8	0	3	0	0	logfile
✔	7Z19	14445	2024-02-22	2022-02-24	2.57	3.23	2.64	3.0	0.005	0.62	0.0	0.04	13.36	0.00	2.000	7.08	0.28	2.6	97.4	0.0	1.13	0.78	0.88	4.29	3.0	0.003	0.49	0.0	0.04	14.86	0.00	2.025	7.02	0.28	2.5	97.5	0.0	1.57	0.31	0.77	0.88	4.27	34105	2174	21	0	6	477	16717	logfile
✔	7Z12	14438	2024-02-17	2022-02-24	3.0	3.83	—	3.4	0.007	1.03	1.0	0.06	15.28	0.01	0.865	31.24	1.37	15.0	83.9	1.1	-3.04	0.84	0.81	1.95	3.4	0.005	0.82	0.0	0.05	16.53	0.00	2.102	21.88	1.52	12.7	87.1	0.2	-1.76	0.57	0.82	0.80	1.56	18352	2286	3	0	0	0	0	logfile
✘	7Z15	14441	2024-02-24	2022-02-24	1.93	2.40	1.98	2.3	0.012	1.01	9.0	0.06	15.88	0.01	1.723	3.87	0.83	1.6	98.4	0.0	1.32	0.83	0.86	6.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	46112	2888	32	0	16	1171	22357	logfile
✔	7U2N	26316	2024-02-16	2022-02-24	2.8	3.30	—	3.4	0.007	0.80	0.0	0.05	12.41	0.00	2.195	23.96	0.00	8.6	91.4	0.0	-4.23	0.52	0.81	5.21	3.3	0.003	0.75	0.0	0.04	14.91	0.00	2.170	11.52	3.89	5.1	94.9	0.0	-0.60	1.09	0.47	0.79	3.75	14080	1725	15	0	20	0	0	logfile
✔	7U2o	26317	2024-02-16	2022-02-24	3.1	3.39	—	3.3	0.007	0.84	0.0	0.05	13.06	0.00	2.101	37.92	0.00	6.5	93.5	0.0	-4.77	0.56	0.82	4.39	3.3	0.004	0.79	0.0	0.05	15.08	0.00	2.147	13.39	4.17	4.3	95.7	0.0	-0.54	0.76	0.54	0.82	3.41	14075	1730	15	0	20	0	0	logfile
✔	7X1R	32947	2024-02-13	2022-02-24	3.9	3.98	—	3.9	0.007	0.75	0.0	0.05	14.25	0.00	2.205	9.01	0.25	2.3	97.7	0.0	-0.91	0.74	0.82	1.82	3.9	0.006	0.72	0.0	0.05	17.16	0.00	2.234	12.11	5.01	5.3	94.7	0.0	0.06	1.76	0.75	0.83	2.01	7608	970	4	0	4	0	0	logfile
✔	7X1H	32941	2024-02-15	2022-02-24	2.96	3.23	3.00	3.3	0.003	0.56	0.0	0.04	13.10	0.00	2.218	3.97	0.17	1.8	98.2	0.0	2.35	0.64	0.82	2.68	3.2	0.003	0.55	0.0	0.04	16.57	0.00	2.223	6.80	2.31	2.3	97.7	0.0	1.66	0.68	0.61	0.86	2.78	10760	1352	2	0	0	0	0	logfile
✔	7Z1o	14451	2024-02-24	2022-02-24	2.7	2.27	—	2.1	0.004	0.65	0.0	0.05	14.18	0.01	2.062	3.97	0.00	2.5	97.5	0.0	0.03	0.79	0.79	3.39	2.1	0.004	0.56	0.0	0.04	16.62	0.00	1.964	6.56	1.65	3.0	97.0	0.0	0.74	0.32	0.81	0.82	3.27	42375	5154	26	66	10	0	0	logfile
✘	7Z18	14444	2024-02-23	2022-02-24	1.98	2.40	2.04	2.3	0.008	0.94	0.0	0.06	15.45	0.01	1.726	3.36	1.19	1.9	98.1	0.0	1.45	0.79	0.82	5.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37659	2432	18	0	10	2	18660	logfile
✔	7Z1L	14447	2024-02-24	2022-02-24	2.8	2.35	2.84	2.2	0.003	0.65	0.0	0.05	13.55	0.00	2.079	4.15	0.02	2.8	97.2	0.0	-0.22	0.83	0.81	3.45	2.2	0.010	0.60	0.0	0.05	15.66	0.00	1.964	6.63	1.56	3.2	96.8	0.0	0.38	0.29	0.84	0.83	3.27	42330	5156	26	63	10	0	0	logfile
✘	7Z17	14443	2024-02-23	2022-02-24	2.57	2.96	2.68	2.9	0.005	0.53	0.0	0.04	10.98	0.00	1.726	6.80	0.84	2.9	97.1	0.0	1.01	0.72	0.77	3.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37592	2432	14	0	5	0	18669	logfile
✔	7Z16	14442	2024-02-24	2022-02-24	2.09	2.57	2.21	2.5	0.006	0.73	0.0	0.05	14.77	0.01	1.956	4.89	1.04	2.1	97.9	0.0	1.45	0.77	0.85	5.34	2.5	0.002	0.52	0.0	0.05	15.07	0.00	1.886	2.95	0.54	1.9	98.1	0.0	1.64	1.97	0.71	0.83	5.08	44690	2882	20	0	10	6	22240	logfile
✔	7Z1M	14448	2024-02-24	2022-02-24	3.4	3.57	3.50	3.5	0.004	0.69	0.0	0.05	15.31	0.00	2.100	4.76	0.00	3.3	96.7	0.0	-0.32	0.88	0.84	2.45	3.5	0.003	0.55	0.0	0.04	16.52	0.00	2.024	7.93	1.10	3.0	96.9	0.0	0.45	0.29	0.89	0.86	2.15	42122	5153	26	53	10	0	0	logfile
✔	7Z14	14440	2024-02-16	2022-02-24	3.15	3.57	—	3.5	0.004	0.72	1.0	0.05	14.57	0.00	2.128	10.06	0.00	4.4	95.6	0.0	-0.09	0.62	0.79	3.59	3.5	0.003	0.64	2.0	0.04	15.06	0.00	2.213	9.65	2.15	3.6	96.4	0.0	0.44	1.20	0.64	0.82	3.29	15856	1913	13	0	28	0	0	logfile
✔	7Z11	14437	2024-02-22	2022-02-24	3.2	2.35	—	2.1	0.005	0.80	0.0	0.05	13.99	0.01	1.867	8.91	0.35	6.3	93.6	0.1	-1.12	0.74	0.73	2.95	2.1	0.004	0.64	0.0	0.04	16.10	0.00	2.127	8.87	2.03	5.6	94.4	0.0	0.09	1.15	0.77	0.78	2.26	34079	4384	13	0	31	0	0	logfile
✔	7X1G	32940	2024-02-15	2022-02-24	2.94	3.19	3.01	3.2	0.003	0.55	0.0	0.04	13.16	0.00	2.218	4.15	0.34	1.9	98.1	0.0	2.38	0.64	0.84	2.98	3.2	0.008	0.69	0.0	0.05	16.03	0.01	2.166	5.93	2.74	2.6	97.4	0.0	1.34	0.57	0.59	0.87	2.77	10760	1352	2	0	0	0	0	logfile
✔	7U2Q	26318	2024-02-14	2022-02-24	3.2	3.38	—	3.4	0.013	1.52	0.0	0.09	12.14	0.01	2.525	1.71	4.83	4.0	95.7	0.3	-0.35	0.74	0.80	3.99	3.4	0.003	0.57	0.0	0.05	14.11	0.00	2.270	4.83	2.67	1.8	97.9	0.3	-0.22	0.69	0.73	0.83	3.31	10536	1352	8	0	8	0	0	logfile
✔	7U2T	26319	2024-02-14	2022-02-24	3.25	3.34	—	3.3	0.014	1.54	4.0	0.09	10.50	0.01	2.512	1.64	1.77	3.4	96.3	0.3	0.15	0.71	0.79	3.73	3.3	0.003	0.58	0.0	0.05	14.81	0.00	2.244	6.36	2.13	1.9	97.8	0.3	-0.30	0.67	0.73	0.85	3.77	10300	1336	8	0	8	0	0	logfile

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