Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Z0L	14427	2024-02-16	2022-02-23	4.0	4.43	4.11	4.3	0.005	0.95	0.0	0.06	15.67	0.01	2.223	7.63	0.65	5.5	94.5	0.0	-0.67	0.58	0.49	—	4.4	0.003	0.67	0.0	0.04	15.03	0.00	2.059	12.52	2.84	3.7	96.3	0.0	0.36	0.94	0.59	0.52	—	13752	856	9	0	12	0	6713	logfile
✔	7U2A	26310	2024-02-13	2022-02-23	4.1	3.51	—	4.0	0.010	1.05	0.0	0.05	18.07	0.00	1.918	11.25	0.31	0.5	99.5	0.0	2.04	0.59	0.61	—	4.0	0.004	0.72	0.0	0.04	17.87	0.01	2.138	16.31	0.00	2.9	97.1	0.0	-0.16	1.06	0.66	0.73	—	6855	761	5	38	2	0	0	logfile
✔	7X13	32933	2024-02-18	2022-02-23	3.7	3.38	—	3.3	0.002	0.51	0.0	0.04	14.42	0.00	2.152	8.27	0.04	1.7	98.3	0.0	2.42	0.50	0.55	1.11	3.3	0.004	0.81	1.0	0.05	16.20	0.00	1.879	14.23	3.39	3.7	96.3	0.0	1.10	1.01	0.53	0.61	1.22	21248	2668	12	0	0	0	0	logfile
✔	7Z0o	14428	2024-02-15	2022-02-23	2.8	1.99	2.70	1.8	0.004	0.66	0.0	0.04	19.64	0.00	2.189	6.20	1.42	1.7	98.3	0.0	1.08	0.68	0.73	3.27	1.7	0.004	0.56	0.0	0.04	21.23	0.00	2.127	8.69	4.44	2.0	98.0	0.0	1.89	0.47	0.77	0.79	3.28	11864	1256	10	78	0	0	0	logfile
✔	7U24	26307	2024-02-18	2022-02-23	3.58	3.66	—	3.6	0.002	0.50	0.0	0.04	18.81	0.00	2.254	5.00	0.11	4.5	95.5	0.0	-0.81	0.54	0.79	2.38	3.6	0.005	0.65	0.0	0.05	17.65	0.00	2.201	8.79	5.32	5.3	94.7	0.0	0.09	0.50	0.55	0.81	2.11	20651	2770	10	0	25	0	0	logfile
✔	7X0S	32923	2024-02-17	2022-02-22	3.1	3.13	—	3.1	0.004	0.61	5.0	0.05	10.92	0.00	1.018	6.85	3.51	4.8	95.2	0.0	-5.89	0.76	0.77	1.78	3.1	0.003	0.70	1.0	0.04	15.50	0.00	1.902	9.80	2.71	5.7	94.3	0.0	-0.21	4.07	0.80	0.85	1.82	68346	8866	49	0	48	16	0	logfile
✔	7U1T	26305	2024-02-13	2022-02-22	3.3	4.15	—	3.3	0.013	1.63	0.0	0.17	24.34	0.00	2.312	57.79	4.77	5.8	93.0	1.2	-1.17	0.76	0.53	0.99	3.4	0.004	0.77	0.0	0.04	25.70	0.01	2.224	14.38	3.85	8.1	91.6	0.3	-0.25	1.87	0.88	0.79	1.16	7574	675	6	118	0	0	0	logfile
✔	7U23	26306	2024-02-15	2022-02-22	4.6	5.00	4.74	4.6	0.004	0.59	0.0	0.04	11.88	0.00	2.198	17.46	2.67	6.7	92.9	0.4	-1.99	0.78	0.60	—	4.6	0.003	0.63	0.0	0.05	11.88	0.00	2.169	15.20	0.00	5.3	94.4	0.3	-0.79	1.46	0.83	0.73	—	11688	1462	4	0	0	0	0	logfile
✔	7X0Z	32930	2024-02-14	2022-02-22	2.96	3.20	—	3.2	0.007	0.79	0.0	0.04	14.78	0.00	1.974	7.24	0.00	4.8	95.2	0.0	0.45	0.65	0.84	3.46	3.2	0.003	0.54	0.0	0.04	17.03	0.00	1.945	6.33	1.85	4.0	96.0	0.0	1.11	0.91	0.66	0.86	2.89	9285	1156	4	0	4	0	0	logfile
✔	7Z0H	14421	2024-02-24	2022-02-22	2.6	2.19	—	2.2	0.004	0.67	0.0	0.05	17.03	0.01	2.024	12.91	1.82	5.9	94.0	0.1	-0.96	0.60	0.75	2.78	2.2	0.004	0.65	0.0	0.04	17.60	0.00	1.930	13.09	3.13	6.0	93.9	0.1	-0.86	0.36	0.61	0.79	2.80	40665	5103	25	0	31	1	0	logfile
✔	7U1S	26304	2024-02-18	2022-02-22	3.8	3.89	—	3.9	0.003	0.50	0.0	0.04	16.53	0.00	2.253	6.13	0.10	5.6	94.4	0.0	-0.53	0.53	0.75	2.13	3.8	0.004	0.71	0.0	0.05	17.88	0.00	2.109	12.78	6.66	6.3	93.7	0.0	-0.52	0.62	0.56	0.77	1.48	21225	2792	11	0	26	0	0	logfile
✔	7X10	32932	2024-02-14	2022-02-22	2.93	2.29	—	2.1	0.005	0.80	0.0	0.05	12.69	0.00	2.192	2.72	0.00	7.5	92.5	0.0	-1.18	0.75	0.73	2.91	2.1	0.004	0.65	0.0	0.04	15.40	0.00	2.137	6.70	2.53	5.3	94.7	0.0	-0.09	1.17	0.76	0.76	1.98	8674	1098	5	0	0	0	0	logfile
✔	7X0Y	32929	2024-02-21	2022-02-22	3.89	4.40	3.97	4.2	0.006	0.75	0.0	0.05	15.13	0.00	2.049	29.33	0.06	10.2	89.8	0.0	-4.73	0.80	0.81	1.29	4.2	0.004	0.70	0.0	0.04	16.12	0.00	2.123	13.47	2.64	8.5	91.5	0.0	-1.10	0.63	0.79	0.82	1.32	15242	1838	10	0	20	0	0	logfile
✔	7X0V	32926	2024-02-15	2022-02-22	3.2	3.39	—	3.3	0.005	0.61	5.0	0.05	10.89	0.00	1.018	6.95	3.50	4.9	95.1	0.0	-5.90	0.79	0.77	1.76	3.3	0.005	0.77	0.0	0.05	16.13	0.00	1.815	11.97	2.80	6.3	93.7	0.0	-0.17	4.29	0.82	0.86	1.57	65000	8440	48	0	48	16	0	logfile
✔	7X0X	32928	2024-02-21	2022-02-22	2.56	3.09	2.66	3.0	0.008	1.00	0.0	0.06	16.66	0.01	2.280	3.83	1.15	4.7	95.3	0.0	-5.09	0.74	0.82	4.42	3.0	0.003	0.64	0.0	0.04	16.57	0.00	2.185	8.46	1.21	3.3	96.7	0.0	0.50	0.60	0.63	0.78	3.47	15680	1904	8	0	4	0	0	logfile
✔	7X06	32918	2024-02-15	2022-02-21	3.1	3.31	—	3.2	0.003	0.51	0.0	0.04	10.80	0.00	2.215	3.96	0.43	4.1	95.9	0.0	2.06	0.66	0.82	2.47	3.3	0.004	0.56	0.0	0.04	14.72	0.00	2.209	5.36	2.75	6.6	93.4	0.0	1.56	1.16	0.66	0.85	2.23	12964	1608	4	2	2	0	0	logfile
✔	7U1Q	26303	2024-02-18	2022-02-21	3.9	4.05	—	4.0	0.003	0.54	0.0	0.04	16.23	0.00	2.228	6.87	0.00	6.6	93.4	0.0	-1.11	0.53	0.75	1.59	4.0	0.004	0.72	0.0	0.05	17.03	0.00	2.103	12.54	3.63	5.7	94.3	0.0	0.08	1.20	0.53	0.76	0.96	21013	2791	11	0	25	0	0	logfile
✔	7X07	32919	2024-02-14	2022-02-21	3.78	4.03	—	4.0	0.013	1.66	0.0	0.08	15.38	0.01	2.145	8.39	1.97	8.1	91.2	0.7	-4.75	0.61	0.78	1.72	4.0	0.003	0.69	0.0	0.04	17.10	0.00	2.266	8.84	2.34	7.6	92.4	0.0	-2.99	0.50	0.60	0.74	1.14	10125	1266	3	0	1	0	0	logfile
✔	7X05	32917	2024-02-15	2022-02-21	3.9	4.05	—	4.0	0.004	0.52	0.0	0.04	10.76	0.00	2.204	4.61	0.00	4.4	95.6	0.0	2.05	0.68	0.83	1.50	4.0	0.003	0.58	0.0	0.04	14.63	0.00	2.103	6.82	3.19	6.4	93.6	0.0	1.77	2.39	0.68	0.84	1.17	13000	1602	6	2	8	0	0	logfile
✘	7YZP	14393	2024-02-17	2022-02-21	4.0	4.15	4.02	4.0	0.003	0.62	1.0	0.04	17.72	0.00	1.593	8.32	0.00	4.2	95.8	0.0	0.73	0.83	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14107	1633	9	59	8	0	0	logfile

• ← previous
• Page 246 of 633
• next →