Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7X06	32918	2024-02-15	2022-02-21	3.1	3.31	—	3.2	0.003	0.51	0.0	0.04	10.80	0.00	2.215	3.96	0.43	4.1	95.9	0.0	2.06	0.66	0.82	2.47	3.3	0.004	0.56	0.0	0.04	14.72	0.00	2.209	5.36	2.75	6.6	93.4	0.0	1.56	1.16	0.66	0.85	2.23	12964	1608	4	2	2	0	0	logfile
✔	7X07	32919	2024-02-14	2022-02-21	3.78	4.03	—	4.0	0.013	1.66	0.0	0.08	15.38	0.01	2.145	8.39	1.97	8.1	91.2	0.7	-4.75	0.61	0.78	1.72	4.0	0.003	0.69	0.0	0.04	17.10	0.00	2.266	8.84	2.34	7.6	92.4	0.0	-2.99	0.50	0.60	0.74	1.14	10125	1266	3	0	1	0	0	logfile
✔	7Z03	14403	2024-02-17	2022-02-21	3.7	4.81	3.71	4.4	0.004	0.70	0.0	0.04	18.98	0.00	1.498	7.19	0.08	3.2	96.8	0.0	0.79	0.77	0.64	1.19	4.4	0.004	0.90	0.0	0.05	20.61	0.00	1.879	22.70	3.06	4.5	95.5	0.0	-0.19	1.13	0.82	0.81	0.73	13396	1497	10	78	8	0	0	logfile
✔	7YZo	14391	2024-02-17	2022-02-21	3.4	3.53	3.40	3.5	0.004	0.70	0.0	0.04	17.73	0.00	1.498	5.76	0.08	3.2	96.8	0.0	0.79	0.80	0.83	2.80	3.5	0.003	0.58	0.0	0.04	19.01	0.00	1.912	7.49	2.67	3.3	96.7	0.0	0.36	0.34	0.81	0.85	2.29	13068	1497	10	62	8	0	0	logfile
✔	7X0A	32922	2024-02-14	2022-02-21	3.1	3.17	—	3.4	0.003	0.50	0.0	0.04	11.70	0.00	1.679	3.53	0.04	3.4	96.6	0.0	-3.71	0.71	0.62	0.78	3.1	0.003	0.71	0.0	0.04	16.21	0.00	2.044	14.68	2.08	3.9	96.1	0.0	0.33	1.70	0.75	0.71	0.70	61215	8019	16	0	0	0	0	logfile
✘	7X01	32914	2024-02-23	2022-02-20	2.62	2.72	—	2.7	0.007	0.69	0.0	0.05	14.01	0.01	2.242	3.31	0.00	3.7	96.3	0.0	-0.67	0.73	0.84	3.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39732	5052	24	0	24	0	0	logfile
✔	7U16	26279	2024-02-13	2022-02-19	2.7	3.30	—	3.5	0.004	0.62	0.0	0.06	16.84	0.00	2.310	8.58	0.00	6.8	93.2	0.0	-2.67	0.29	0.68	2.62	3.5	0.003	0.58	0.0	0.05	14.47	0.00	2.180	7.27	1.31	4.8	95.2	0.0	-2.62	1.34	0.36	0.80	4.68	3456	405	6	0	12	0	0	logfile
✔	7U11	26274	2024-02-13	2022-02-19	3.2	2.77	—	3.4	0.006	0.73	0.0	0.06	17.79	0.00	2.186	14.68	2.36	6.0	94.0	0.0	-2.79	0.29	0.64	3.31	3.4	0.004	0.78	0.0	0.06	17.99	0.00	2.209	10.90	1.31	8.3	91.7	0.0	-3.51	0.96	0.34	0.70	3.20	3456	405	6	0	12	0	0	logfile
✔	7U13	26276	2024-02-13	2022-02-19	2.9	3.67	—	4.2	0.018	2.43	0.0	0.07	19.23	0.01	2.120	29.95	6.30	11.3	88.0	0.8	-3.06	0.30	0.47	1.37	4.2	0.004	1.02	0.0	0.06	17.58	0.00	2.006	17.97	4.99	12.8	87.2	0.0	-4.19	3.92	0.34	0.56	1.86	3456	405	6	0	12	0	0	logfile
✔	7U0Z	26268	2024-02-13	2022-02-19	4.2	3.55	—	4.3	0.004	0.75	0.0	0.05	11.44	0.00	2.146	12.81	0.00	1.9	98.1	0.0	-2.57	0.41	0.71	—	4.3	0.004	0.75	0.0	0.05	12.25	0.00	2.215	13.20	0.00	5.2	94.8	0.0	-3.35	0.71	0.39	0.73	—	2487	330	3	0	0	0	0	logfile
✔	7U10	26273	2024-02-13	2022-02-19	3.0	3.45	—	4.3	0.004	0.64	0.0	0.05	17.22	0.00	2.230	10.70	0.00	6.8	93.2	0.0	-2.82	0.37	0.64	3.73	4.2	0.003	0.75	0.0	0.06	18.60	0.00	2.188	12.01	2.65	5.8	94.2	0.0	-3.66	2.73	0.28	0.68	3.37	3429	405	6	0	12	0	0	logfile
✔	7U14	26277	2024-02-13	2022-02-19	4.5	4.22	—	4.6	0.006	0.94	0.0	0.07	19.58	0.00	2.369	21.08	6.30	10.5	89.5	0.0	-3.07	0.30	0.52	—	4.7	0.006	1.06	0.0	0.07	15.93	0.00	2.137	21.37	0.00	15.3	84.7	0.0	-4.28	1.55	0.33	0.60	—	3456	405	6	0	12	0	0	logfile
✔	7U12	26275	2024-02-13	2022-02-19	3.5	3.59	—	4.4	0.011	1.06	0.0	0.07	16.72	0.01	2.160	20.06	5.51	8.0	92.0	0.0	-3.00	0.29	0.45	2.77	4.3	0.004	0.82	0.0	0.06	15.16	0.00	2.205	11.72	3.94	9.3	90.7	0.0	-3.74	2.89	0.33	0.56	2.09	3456	405	6	0	12	0	0	logfile
✔	7U15	26278	2024-02-13	2022-02-19	3.0	3.14	—	3.3	0.006	1.22	0.0	0.12	17.23	0.01	1.886	12.16	3.44	3.8	96.2	0.0	-6.51	0.26	0.64	1.55	3.2	0.003	0.75	0.0	0.11	15.95	0.00	1.960	11.72	4.50	18.0	82.0	0.0	-5.23	1.45	0.27	0.70	3.20	6684	405	6	0	12	0	3255	logfile
✔	7WZR	32912	2024-02-20	2022-02-19	4.7	4.70	—	4.4	0.008	1.21	3.0	0.06	7.95	0.01	2.197	7.80	0.00	21.6	77.2	1.2	-4.58	0.76	0.65	—	4.4	0.002	0.67	0.0	0.04	4.72	0.00	2.151	1.89	0.00	11.3	88.4	0.3	-0.14	1.59	0.76	0.69	—	27037	5440	4	0	0	0	0	logfile
✔	7U0X	26267	2024-02-22	2022-02-19	3.82	4.16	3.90	4.1	0.003	0.59	0.0	0.04	15.88	0.00	1.712	8.92	0.39	4.0	95.9	0.0	-0.35	0.64	0.58	1.34	4.1	0.003	0.59	0.0	0.04	15.91	0.00	2.120	10.00	4.64	4.2	95.8	0.0	-0.45	0.60	0.74	0.74	1.30	33074	4160	25	0	59	0	0	logfile
✘	7WZN	32907	2024-02-20	2022-02-18	4.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27190	3726	30	0	211	0	0	logfile
✔	7U0J	26261	2024-02-16	2022-02-18	2.7	3.24	—	3.1	0.008	0.93	3.0	0.05	27.01	0.01	2.088	6.00	0.39	4.6	95.3	0.1	-0.97	0.80	0.82	3.63	3.1	0.003	0.59	0.0	0.04	27.35	0.00	2.213	8.20	3.33	4.6	95.4	0.0	1.51	1.11	0.77	0.79	3.49	15622	1210	12	298	0	0	0	logfile
✔	7U0P	26262	2024-02-22	2022-02-18	3.76	4.05	3.79	3.9	0.005	0.62	0.0	0.04	17.21	0.00	2.132	5.27	0.42	3.5	96.5	0.0	-0.13	0.76	0.74	1.17	3.9	0.003	0.60	0.0	0.04	16.82	0.00	2.157	7.05	4.19	4.1	95.9	0.0	-0.55	0.60	0.79	0.79	1.21	32371	4102	15	0	32	0	0	logfile
✔	7U0G	26258	2024-02-17	2022-02-18	2.6	3.10	—	2.9	0.006	0.78	2.0	0.04	25.56	0.00	2.154	14.81	0.87	3.8	96.1	0.1	0.26	0.84	0.87	2.78	3.0	0.003	0.53	0.0	0.03	26.16	0.00	2.030	23.57	2.61	5.1	94.9	0.0	1.97	1.13	0.82	0.86	2.74	18571	1510	15	266	0	0	1244	logfile

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