Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7U0G	26258	2024-02-17	2022-02-18	2.6	3.10	—	2.9	0.006	0.78	2.0	0.04	25.56	0.00	2.154	14.81	0.87	3.8	96.1	0.1	0.26	0.84	0.87	2.78	3.0	0.003	0.53	0.0	0.03	26.16	0.00	2.030	23.57	2.61	5.1	94.9	0.0	1.97	1.13	0.82	0.86	2.74	18571	1510	15	266	0	0	1244	logfile
✔	7YYo	14385	2024-02-22	2022-02-18	2.87	3.03	—	3.0	0.026	1.42	0.0	0.05	20.68	0.01	2.025	12.73	12.83	5.7	94.3	0.0	-4.07	0.82	0.82	3.13	3.0	0.006	1.04	6.0	0.05	18.93	0.01	1.946	8.75	2.45	3.5	96.3	0.2	-0.12	0.60	0.85	0.86	3.50	35136	4424	24	0	16	0	0	logfile
✔	7YZ4	14387	2024-02-17	2022-02-18	3.84	3.32	4.13	3.2	0.004	0.78	0.0	0.05	11.95	0.01	2.253	1.46	0.92	3.6	96.4	0.0	-2.13	0.65	0.63	1.40	3.1	0.003	0.57	0.0	0.04	14.32	0.00	2.000	6.92	1.38	3.7	96.3	0.0	0.71	1.23	0.66	0.64	0.91	19805	1234	1	0	0	0	9953	logfile
✔	7U0P	26262	2024-02-22	2022-02-18	3.76	4.05	3.79	3.9	0.005	0.62	0.0	0.04	17.21	0.00	2.132	5.27	0.42	3.5	96.5	0.0	-0.13	0.76	0.74	1.17	3.9	0.003	0.60	0.0	0.04	16.82	0.00	2.157	7.05	4.19	4.1	95.9	0.0	-0.55	0.60	0.79	0.79	1.21	32371	4102	15	0	32	0	0	logfile
✔	7YYM	14383	2024-02-18	2022-02-18	4.19	3.71	4.37	4.2	0.004	0.80	0.0	0.05	15.16	0.01	2.262	1.61	0.18	2.9	97.1	0.0	0.72	0.70	0.70	—	4.2	0.003	0.56	0.0	0.04	15.43	0.00	2.057	9.66	0.00	4.4	95.6	0.0	0.90	0.62	0.70	0.71	—	22359	1281	2	55	0	0	10961	logfile
✔	7U0J	26261	2024-02-16	2022-02-18	2.7	3.24	—	3.1	0.008	0.93	3.0	0.05	27.01	0.01	2.088	6.00	0.39	4.6	95.3	0.1	-0.97	0.80	0.82	3.63	3.1	0.003	0.59	0.0	0.04	27.35	0.00	2.213	8.20	3.33	4.6	95.4	0.0	1.51	1.11	0.77	0.79	3.49	15622	1210	12	298	0	0	0	logfile
✔	7U05	26254	2024-02-18	2022-02-17	3.7	3.56	—	3.5	0.004	0.81	0.0	0.05	14.14	0.01	2.019	4.02	0.07	9.7	90.2	0.1	-1.55	0.51	0.72	2.03	3.5	0.003	0.58	0.0	0.04	16.47	0.00	1.864	10.58	3.46	9.8	90.0	0.1	-1.06	0.53	0.53	0.74	2.00	127996	7632	32	0	722	0	62402	logfile
✔	7WZ4	32904	2024-02-14	2022-02-17	3.0	3.46	—	3.4	0.003	0.59	0.0	0.04	12.94	0.00	2.096	3.26	0.12	2.7	97.3	0.0	1.09	0.65	0.85	3.69	3.4	0.003	0.52	0.0	0.04	15.93	0.00	2.090	4.80	2.54	2.4	97.6	0.0	1.60	0.95	0.62	0.85	3.05	8187	1075	5	0	0	0	0	logfile
✔	7WZ7	32905	2024-02-14	2022-02-17	2.83	2.26	—	2.0	0.010	0.95	0.0	0.06	11.50	0.01	2.230	6.56	0.00	5.4	94.6	0.0	-0.69	0.71	0.71	2.86	2.0	0.005	0.70	0.0	0.04	14.91	0.00	2.133	12.37	2.52	4.7	95.3	0.0	0.41	1.18	0.72	0.73	1.62	8676	1108	5	0	0	0	0	logfile
✔	7U06	26255	2024-02-17	2022-02-17	4.2	3.74	—	3.7	0.005	0.86	0.0	0.05	14.08	0.01	1.997	5.33	0.01	11.1	88.8	0.1	-2.22	0.50	0.68	—	3.7	0.003	0.59	0.0	0.04	14.12	0.00	1.900	11.24	0.04	11.1	88.7	0.2	-1.86	0.50	0.52	0.70	—	124310	7391	31	0	764	0	60450	logfile
✔	7WYW	32896	2024-02-18	2022-02-16	3.8	3.91	—	3.8	0.011	1.45	0.0	0.07	20.11	0.01	1.861	10.73	10.30	8.7	90.7	0.6	-3.47	0.74	0.80	1.47	3.8	0.002	0.64	0.0	0.04	16.37	0.00	1.951	7.74	1.95	2.5	97.5	0.0	0.53	2.06	0.76	0.83	1.30	22606	2654	22	0	76	10	0	logfile
✘	7WYi	32892	2024-02-19	2022-02-16	3.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25007	3631	28	0	171	0	0	logfile
✔	7TZo	26213	2024-02-13	2022-02-16	3.28	3.77	—	3.7	0.008	1.12	34.0	0.08	14.31	0.01	1.176	19.37	1.53	6.6	93.1	0.3	-1.06	0.68	0.74	0.94	3.7	0.003	0.70	1.0	0.04	16.57	0.00	2.029	9.06	2.69	4.2	95.7	0.1	0.84	1.47	0.72	0.81	0.94	57117	7481	8	0	0	0	0	logfile
✔	7WZ1	32901	2024-02-19	2022-02-16	3.4	2.58	—	2.2	0.003	0.66	0.0	0.04	9.69	0.00	2.212	7.59	5.40	7.6	92.4	0.0	-4.14	0.74	0.73	2.32	2.2	0.004	0.71	0.0	0.05	14.29	0.00	2.023	13.24	4.95	10.4	89.6	0.0	-2.03	1.34	0.77	0.78	2.21	24467	3092	6	0	28	0	0	logfile
✔	7YXY	14369	2024-02-16	2022-02-16	3.1	3.25	3.02	3.1	0.003	0.59	0.0	0.04	13.93	0.00	2.219	10.79	0.00	4.9	95.0	0.1	0.42	0.64	0.78	1.95	3.1	0.005	0.87	1.0	0.04	15.86	0.00	2.153	12.90	1.18	5.6	94.3	0.1	0.37	0.51	0.65	0.81	1.84	14031	1739	1	0	0	0	0	logfile
✔	7WZ2	32902	2024-02-19	2022-02-16	2.7	2.24	—	2.1	0.003	0.70	0.0	0.05	10.24	0.01	2.236	6.44	5.57	6.6	93.4	0.0	-3.27	0.76	0.74	3.09	2.0	0.004	0.69	0.0	0.05	14.39	0.00	2.182	9.49	3.29	8.0	92.0	0.0	-1.26	0.68	0.79	0.79	3.45	25490	3228	6	0	34	0	0	logfile
✔	7WZ0	32900	2024-02-18	2022-02-16	3.0	2.95	—	3.1	0.013	1.50	0.0	0.14	20.13	0.01	1.828	12.17	10.52	8.8	90.4	0.8	-3.72	0.73	0.82	2.53	3.0	0.004	0.70	0.0	0.05	16.79	0.00	1.895	5.95	2.30	2.6	97.4	0.0	0.71	2.31	0.76	0.88	3.00	22688	2654	22	0	78	10	0	logfile
✔	7WYU	32894	2024-02-18	2022-02-16	3.4	3.42	—	3.4	0.011	1.30	0.0	0.06	20.27	0.01	1.911	9.36	10.48	7.5	92.1	0.3	-3.01	0.74	0.82	1.83	3.4	0.003	0.60	0.0	0.04	16.37	0.00	1.909	6.07	2.12	2.3	97.7	0.0	0.45	1.31	0.77	0.88	2.18	22662	2654	22	0	78	4	0	logfile
✔	7WYX	32897	2024-02-18	2022-02-16	3.4	3.47	—	3.5	0.011	1.35	0.0	0.07	20.16	0.01	1.893	10.48	10.43	8.3	91.0	0.7	-3.31	0.74	0.80	1.70	3.5	0.002	0.63	0.0	0.04	16.53	0.00	2.000	5.25	1.68	2.2	97.8	0.0	0.72	1.73	0.76	0.85	1.74	22714	2654	22	0	78	6	0	logfile
✘	7WZ3	32903	2024-02-14	2022-02-16	4.1	3.52	—	3.4	0.003	0.58	0.0	0.04	11.64	0.00	2.022	2.41	0.06	2.8	97.2	0.0	-4.27	0.62	0.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	58551	7652	22	0	6	0	0	logfile

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