Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YXX	14368	2024-02-24	2022-02-16	3.3	3.86	3.20	3.1	0.003	0.63	0.0	0.04	14.01	0.00	2.196	12.44	0.26	5.1	94.7	0.2	-0.96	0.81	0.75	1.65	3.1	0.003	0.65	0.0	0.04	15.12	0.00	2.169	13.01	0.37	5.2	94.7	0.1	0.53	0.95	0.82	0.81	1.35	42357	5249	3	0	0	0	0	logfile
✔	7TZo	26213	2024-02-13	2022-02-16	3.28	3.77	—	3.7	0.008	1.12	34.0	0.08	14.31	0.01	1.176	19.37	1.53	6.6	93.1	0.3	-1.06	0.68	0.74	0.94	3.7	0.003	0.70	1.0	0.04	16.57	0.00	2.029	9.06	2.69	4.2	95.7	0.1	0.84	1.47	0.72	0.81	0.94	57117	7481	8	0	0	0	0	logfile
✔	7YXY	14369	2024-02-16	2022-02-16	3.1	3.25	3.02	3.1	0.003	0.59	0.0	0.04	13.93	0.00	2.219	10.79	0.00	4.9	95.0	0.1	0.42	0.64	0.78	1.95	3.1	0.005	0.87	1.0	0.04	15.86	0.00	2.153	12.90	1.18	5.6	94.3	0.1	0.37	0.51	0.65	0.81	1.84	14031	1739	1	0	0	0	0	logfile
✔	7WZ0	32900	2024-02-18	2022-02-16	3.0	2.95	—	3.1	0.013	1.50	0.0	0.14	20.13	0.01	1.828	12.17	10.52	8.8	90.4	0.8	-3.72	0.73	0.82	2.53	3.0	0.004	0.70	0.0	0.05	16.79	0.00	1.895	5.95	2.30	2.6	97.4	0.0	0.71	2.31	0.76	0.88	3.00	22688	2654	22	0	78	10	0	logfile
✘	7WY8	32887	2024-02-13	2022-02-15	2.83	2.24	—	2.0	0.007	0.81	0.0	0.05	12.03	0.01	2.220	1.00	0.00	4.1	95.9	0.0	-0.39	0.76	0.76	3.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8049	1015	5	0	0	0	0	logfile
✔	7WYB	32890	2024-02-14	2022-02-15	2.97	2.33	—	2.1	0.005	0.80	0.0	0.05	12.35	0.00	2.176	5.06	0.00	7.0	93.0	0.0	-1.33	0.66	0.61	1.67	2.1	0.002	0.63	0.0	0.04	15.04	0.00	2.203	9.54	0.84	4.8	95.2	0.0	0.09	0.41	0.66	0.62	1.23	8757	1115	5	0	0	0	0	logfile
✔	7TZ6	26203	2024-02-15	2022-02-15	2.88	3.27	—	3.2	0.005	0.77	0.0	0.04	12.16	0.01	2.038	1.51	0.26	2.6	97.3	0.0	0.43	0.65	0.83	3.78	3.2	0.003	0.57	0.0	0.04	15.40	0.00	1.881	4.06	1.59	3.0	97.0	0.0	1.64	0.68	0.67	0.86	3.19	64906	4126	28	0	10	0	32164	logfile
✔	7TYZ	26200	2024-02-21	2022-02-15	3.51	3.89	—	3.7	0.004	0.64	0.0	0.05	17.21	0.00	2.126	7.84	0.00	8.7	91.3	0.0	-1.41	0.74	0.79	1.64	3.7	0.014	0.79	0.0	0.05	15.40	0.01	2.091	10.91	1.75	10.6	89.3	0.1	-1.49	0.97	0.76	0.86	1.86	29736	3711	27	0	66	0	0	logfile
✔	7WXU	32881	2024-02-13	2022-02-15	2.85	2.28	—	2.1	0.009	0.84	0.0	0.05	13.41	0.01	2.209	1.23	0.00	5.8	94.2	0.0	-1.00	0.78	0.78	3.95	2.1	0.003	0.60	0.0	0.04	15.63	0.00	2.113	4.00	2.59	3.8	96.2	0.0	0.64	0.36	0.80	0.81	2.61	8116	1034	5	0	0	0	0	logfile
✔	7WXW	32882	2024-02-13	2022-02-15	2.84	2.24	—	2.1	0.005	0.78	0.0	0.05	12.89	0.01	2.256	1.29	0.00	4.4	95.6	0.0	-2.04	0.75	0.75	3.34	2.0	0.003	0.59	0.0	0.04	15.70	0.00	2.181	5.61	2.49	3.5	96.5	0.0	0.15	1.17	0.78	0.78	2.65	8121	1032	5	0	0	0	0	logfile
✔	7WY5	32884	2024-02-13	2022-02-15	2.83	2.25	—	2.0	0.005	0.75	0.0	0.05	12.83	0.00	1.986	1.32	0.00	5.4	94.6	0.0	-0.28	0.77	0.76	3.50	2.0	0.003	0.60	0.0	0.04	15.37	0.00	2.156	5.52	2.19	4.1	95.9	0.0	0.72	0.38	0.79	0.79	2.56	8009	1013	5	0	0	0	0	logfile
✔	7TZ5	26202	2024-02-16	2022-02-15	3.41	3.66	—	3.6	0.009	1.18	9.0	0.07	13.20	0.00	2.067	15.18	0.30	10.6	89.0	0.4	-2.38	0.70	0.83	3.89	3.6	0.003	0.65	0.0	0.04	15.03	0.00	2.175	9.73	2.50	7.6	92.4	0.0	-1.27	0.71	0.67	0.82	3.65	16023	2142	9	0	0	0	0	logfile
✔	7TZF	26208	2024-02-14	2022-02-15	2.4	2.00	2.20	2.3	0.004	0.53	0.0	0.04	14.49	0.00	2.252	4.74	1.43	1.0	99.0	0.0	-2.36	0.54	0.77	4.70	2.0	0.004	0.64	0.0	0.04	16.81	0.00	2.180	6.16	1.82	1.9	98.1	0.0	0.59	0.51	0.57	0.83	4.87	10342	1272	13	0	19	25	0	logfile
✔	7YX3	14353	2024-02-21	2022-02-15	4.0	3.15	3.42	3.3	0.004	0.66	0.0	0.05	15.41	0.00	1.650	14.33	0.61	4.8	95.2	0.0	-0.90	0.44	0.59	—	3.3	0.003	0.72	3.0	0.05	16.42	0.00	1.787	13.55	3.96	5.0	95.0	0.0	-0.85	1.42	0.48	0.68	—	91116	11682	36	0	18	0	0	logfile
✔	7WY0	32883	2024-02-14	2022-02-15	2.83	2.21	—	2.0	0.007	0.87	0.0	0.06	11.98	0.00	1.690	7.73	0.00	6.2	93.8	0.0	-1.00	0.74	0.73	3.63	2.0	0.004	0.67	0.0	0.04	15.23	0.00	2.116	12.31	2.80	5.3	94.7	0.0	0.05	0.46	0.75	0.75	2.77	8723	1112	5	0	0	0	0	logfile
✔	7TZ0	26201	2024-02-13	2022-02-15	4.17	3.79	—	4.4	0.003	0.62	0.0	0.04	12.38	0.01	2.265	10.65	0.00	7.9	92.1	0.0	-1.73	0.41	0.61	—	4.1	0.003	0.67	0.0	0.04	12.49	0.00	2.128	16.93	0.00	8.7	91.3	0.0	-1.81	1.40	0.44	0.63	—	2674	347	2	0	0	0	0	logfile
✔	7YWY	14352	2024-02-15	2022-02-15	3.4	3.54	—	3.5	0.009	1.03	0.0	0.05	14.60	0.01	2.158	7.57	2.10	4.8	94.7	0.5	-0.06	0.58	0.77	1.22	3.5	0.004	0.76	1.0	0.04	16.79	0.00	1.503	7.41	3.08	2.7	96.9	0.4	1.55	0.60	0.63	0.75	1.39	63994	8568	28	0	0	0	0	logfile
✔	7WXF	32877	2024-02-13	2022-02-14	3.6	3.96	3.68	4.0	0.007	0.79	0.0	0.05	15.05	0.00	2.123	13.40	0.29	12.6	87.1	0.2	-4.85	0.72	0.79	1.44	3.9	0.003	0.71	0.0	0.04	16.02	0.00	2.199	10.79	2.46	7.2	92.8	0.0	-1.37	1.20	0.71	0.77	1.52	6494	860	2	0	0	0	0	logfile
✘	7WWU	32873	2024-02-18	2022-02-14	3.5	3.60	—	3.5	0.003	0.60	0.0	0.04	15.51	0.00	2.159	9.10	0.11	8.8	91.2	0.0	-1.71	0.74	0.78	2.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18864	2400	10	50	0	0	0	logfile
✔	7WXi	32880	2024-02-13	2022-02-14	4.2	4.31	4.10	4.2	0.008	0.87	0.0	0.05	15.47	0.00	2.148	24.87	0.58	18.2	81.8	0.0	-4.77	0.78	0.81	—	4.2	0.003	0.73	0.0	0.04	13.65	0.00	2.171	14.12	0.00	7.2	92.8	0.0	-0.93	1.26	0.77	0.79	—	6522	862	4	0	0	0	0	logfile

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