Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TYY	26199	2024-02-14	2022-02-14	3.0	2.60	2.90	2.9	0.003	0.57	0.0	0.04	13.40	0.00	2.174	7.31	2.03	1.8	98.2	0.0	-3.39	0.59	0.78	3.16	2.9	0.004	0.61	0.0	0.04	15.93	0.00	2.131	11.49	2.85	2.9	97.1	0.0	0.15	0.99	0.62	0.82	2.99	9802	1250	11	0	9	7	0	logfile
✔	7WXF	32877	2024-02-13	2022-02-14	3.6	3.96	3.68	4.0	0.007	0.79	0.0	0.05	15.05	0.00	2.123	13.40	0.29	12.6	87.1	0.2	-4.85	0.72	0.79	1.44	3.9	0.003	0.71	0.0	0.04	16.02	0.00	2.199	10.79	2.46	7.2	92.8	0.0	-1.37	1.20	0.71	0.77	1.52	6494	860	2	0	0	0	0	logfile
✘	7TYR	26192	2024-02-24	2022-02-14	3.33	3.67	3.41	3.5	0.004	0.76	0.0	0.05	19.61	0.00	2.171	8.15	2.70	5.1	94.7	0.2	0.19	0.79	0.79	1.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31610	3957	2	0	0	0	0	logfile
✔	7TYX	26197	2024-02-14	2022-02-14	2.55	3.24	2.69	3.2	0.004	0.52	0.0	0.04	13.25	0.00	2.231	4.31	1.62	1.8	98.2	0.0	-3.16	0.59	0.75	3.60	3.2	0.003	0.58	0.0	0.04	15.27	0.00	2.106	6.93	3.14	1.8	98.2	0.0	0.93	0.62	0.46	0.67	3.39	10219	1269	8	0	14	0	0	logfile
✔	7TYV	26195	2024-02-17	2022-02-14	2.8	2.28	2.98	2.1	0.005	0.71	0.0	0.05	17.12	0.00	2.081	7.27	0.00	5.0	95.0	0.0	-0.19	0.75	0.72	2.31	2.0	0.004	0.65	0.0	0.05	16.14	0.00	2.107	7.15	2.72	5.3	94.7	0.0	-0.13	0.32	0.77	0.76	2.15	17306	2114	30	0	58	0	0	logfile
✔	7TYW	26196	2024-02-14	2022-02-14	3.0	2.92	2.97	3.1	0.004	0.68	1.0	0.04	13.38	0.00	2.199	5.38	1.41	1.9	98.1	0.0	-4.19	0.58	0.75	2.71	3.0	0.004	0.64	0.0	0.04	15.68	0.00	2.141	8.52	4.13	3.3	96.7	0.0	-0.40	0.53	0.60	0.80	3.11	9779	1256	10	0	7	1	0	logfile
✔	7WXG	32878	2024-02-13	2022-02-14	4.2	4.21	3.56	4.2	0.012	1.07	0.0	0.05	15.42	0.00	2.184	12.87	0.29	10.7	89.3	0.0	-5.16	0.51	0.80	—	4.2	0.003	0.71	0.0	0.04	13.84	0.00	2.246	10.45	0.00	6.5	93.5	0.0	-0.44	0.61	0.51	0.78	—	3295	430	1	0	1	0	0	logfile
✔	7WXH	32879	2024-02-13	2022-02-14	4.3	4.50	3.92	4.3	0.006	0.86	0.0	0.04	14.12	0.00	2.067	26.18	1.74	11.4	88.3	0.2	-4.55	0.79	0.82	—	4.3	0.003	0.69	0.0	0.04	12.98	0.00	2.180	15.62	0.00	7.6	92.4	0.0	-1.43	1.32	0.78	0.80	—	6494	860	2	0	0	0	0	logfile
✔	7WWV	32874	2024-02-18	2022-02-14	3.2	3.31	—	3.3	0.002	0.57	0.0	0.04	16.78	0.00	2.204	6.39	0.00	8.4	91.3	0.2	-0.65	0.74	0.80	2.46	3.3	0.003	0.59	0.0	0.04	18.38	0.00	2.043	7.69	2.56	9.6	90.2	0.2	-0.71	1.45	0.75	0.83	2.49	19622	2233	11	117	0	0	0	logfile
✘	7WWU	32873	2024-02-18	2022-02-14	3.5	3.60	—	3.5	0.003	0.60	0.0	0.04	15.51	0.00	2.159	9.10	0.11	8.8	91.2	0.0	-1.71	0.74	0.78	2.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18864	2400	10	50	0	0	0	logfile
✔	7TYS	26193	2024-02-18	2022-02-14	3.41	3.59	—	3.6	0.004	0.52	0.0	0.04	17.04	0.00	2.235	8.30	2.39	3.7	96.3	0.0	-0.22	0.58	0.81	2.74	3.6	0.003	0.58	0.0	0.04	17.31	0.00	2.160	10.20	5.44	3.4	96.6	0.0	0.24	1.09	0.57	0.80	2.11	21286	2788	11	0	27	0	0	logfile
✔	7WX4	32876	2024-02-13	2022-02-14	3.4	3.64	2.77	3.7	0.006	0.59	0.0	0.04	16.46	0.00	2.219	8.20	6.39	7.2	92.8	0.0	-3.40	0.43	0.82	0.72	3.7	0.004	0.55	0.0	0.04	17.70	0.00	2.110	6.95	5.48	6.4	93.6	0.0	-0.39	0.45	0.44	0.83	0.51	1992	260	2	0	0	0	0	logfile
✔	7WX3	32875	2024-02-14	2022-02-14	3.1	3.61	3.03	3.5	0.011	0.91	0.0	0.05	16.74	0.00	2.150	6.65	3.70	4.6	95.4	0.0	-3.51	0.57	0.78	1.78	3.5	0.004	0.63	0.0	0.04	16.67	0.00	2.073	6.29	2.18	2.3	97.7	0.0	-0.48	1.55	0.56	0.78	1.18	8472	1086	12	0	8	0	0	logfile
✔	7WWJ	32867	2024-02-20	2022-02-13	3.5	4.15	—	3.8	0.003	0.60	0.0	0.05	13.50	0.00	2.202	8.64	0.00	3.2	96.8	0.0	0.07	0.83	0.87	2.59	3.8	0.003	0.58	0.0	0.04	14.65	0.00	2.180	8.00	1.43	3.4	96.6	0.0	0.27	0.91	0.82	0.86	2.26	26915	3367	24	0	43	0	0	logfile
✔	7WWK	32868	2024-02-13	2022-02-13	3.4	3.74	—	3.6	0.005	0.71	0.0	0.05	12.68	0.00	2.206	7.38	0.00	4.1	95.7	0.2	-0.93	0.74	0.87	3.33	3.6	0.003	0.59	0.0	0.04	14.93	0.00	2.169	7.15	2.63	4.6	95.4	0.0	-0.78	0.37	0.75	0.90	2.86	6620	845	6	0	0	0	0	logfile
✔	7TYN	26188	2024-02-14	2022-02-13	2.6	2.72	2.56	2.8	0.004	0.62	1.0	0.05	13.82	0.00	2.216	5.53	2.01	1.2	98.8	0.0	-2.90	0.67	0.81	3.62	2.8	0.003	0.58	0.0	0.04	16.05	0.00	2.187	6.66	3.27	2.2	97.8	0.0	0.99	0.46	0.67	0.84	3.21	9364	1154	7	0	18	0	0	logfile
✔	7TYM	26185	2024-02-15	2022-02-13	3.4	3.43	—	3.5	0.002	0.54	0.0	0.04	15.94	0.00	2.175	8.12	0.00	7.1	92.8	0.1	-1.35	0.73	0.81	2.62	3.5	0.002	0.54	0.0	0.04	16.43	0.00	2.169	7.28	2.67	7.4	92.6	0.0	-1.55	1.11	0.72	0.81	3.08	12112	1542	2	0	0	0	0	logfile
✔	7TYi	26180	2024-02-14	2022-02-13	3.3	3.44	3.19	3.5	0.004	0.57	0.0	0.04	12.81	0.00	2.217	6.55	1.50	1.6	98.4	0.0	-2.88	0.66	0.77	2.71	3.5	0.005	0.90	1.0	0.05	14.87	0.00	2.092	8.31	3.30	2.7	97.3	0.0	0.12	0.51	0.63	0.83	2.75	9413	1154	6	0	13	0	0	logfile
✔	7TYH	26179	2024-02-14	2022-02-13	3.3	3.26	3.31	3.4	0.003	0.61	0.0	0.04	12.28	0.01	2.274	4.73	1.05	1.9	98.1	0.0	-4.28	0.61	0.76	2.36	3.4	0.002	0.55	0.0	0.04	15.17	0.00	2.090	8.05	2.93	2.2	97.8	0.0	-0.65	0.49	0.59	0.78	2.50	9492	1246	7	0	1	0	0	logfile
✔	7WWM	32871	2024-02-21	2022-02-13	2.8	3.23	—	3.2	0.011	1.09	0.0	0.08	17.31	0.01	1.923	22.61	10.28	12.2	85.5	2.3	-4.23	0.67	0.71	2.23	3.2	0.005	0.84	2.0	0.05	16.10	0.00	1.967	7.90	3.11	6.6	93.1	0.3	-1.29	2.30	0.67	0.82	2.07	29536	3655	35	0	71	0	0	logfile

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