Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R5S	14336	2024-02-20	2022-02-11	2.83	3.61	—	3.0	0.003	0.51	0.0	0.04	16.18	0.00	1.653	7.48	0.82	2.6	97.3	0.1	-0.67	0.84	0.76	2.20	3.1	0.003	0.65	0.0	0.04	17.81	0.00	2.101	8.32	1.42	3.0	97.0	0.0	2.09	0.53	0.90	0.89	2.23	26871	3126	18	82	0	1	0	logfile
✔	7WVP	32856	2024-02-21	2022-02-10	3.7	3.43	—	3.8	0.005	0.85	2.0	0.06	13.45	0.01	2.335	3.35	0.40	3.9	95.9	0.1	-4.59	0.70	0.59	0.30	3.8	0.005	0.93	1.0	0.05	15.86	0.00	1.881	16.90	3.28	4.1	95.9	0.0	-1.24	1.49	0.75	0.67	0.40	29601	3750	4	0	0	0	0	logfile
✔	7WVE	32851	2024-02-15	2022-02-10	3.11	3.42	—	3.4	0.015	1.48	0.0	0.04	19.67	0.09	2.270	5.14	0.16	3.1	96.9	0.0	-0.88	0.70	0.79	3.87	3.4	0.005	1.77	0.0	0.04	20.77	0.02	2.129	10.02	2.61	6.8	93.2	0.0	-1.87	1.05	0.70	0.82	3.60	12498	1318	4	46	46	0	0	logfile
✔	7TY0	26163	2024-02-15	2022-02-10	3.5	3.62	3.44	3.6	0.013	1.50	1.0	0.11	10.11	0.01	2.417	1.03	0.39	2.1	97.7	0.1	0.78	0.70	0.73	3.93	3.6	0.004	0.65	0.0	0.05	12.25	0.00	1.979	7.18	2.85	3.9	96.1	0.0	0.36	0.58	0.72	0.76	3.72	10640	1522	18	0	24	0	0	logfile
✔	7WVJ	32853	2024-02-15	2022-02-10	3.26	3.64	—	3.6	0.015	1.52	0.0	0.04	21.29	0.09	2.279	6.54	0.16	5.0	95.0	0.0	-1.88	0.71	0.70	1.95	3.6	0.004	1.76	0.0	0.04	21.92	0.02	2.123	14.71	1.71	7.7	92.3	0.0	-2.29	1.33	0.71	0.74	1.69	12488	1318	4	46	46	0	0	logfile
✔	7WVN	32854	2024-02-19	2022-02-10	3.4	2.96	—	3.5	0.006	0.83	0.0	0.05	8.23	0.01	2.348	1.91	0.11	3.7	96.2	0.1	-3.13	0.72	0.68	1.19	3.5	0.004	0.74	0.0	0.05	14.67	0.00	2.077	11.83	2.85	3.8	96.2	0.0	-0.48	1.22	0.80	0.79	1.81	24805	3162	3	0	0	0	0	logfile
✔	7WVQ	32857	2024-02-21	2022-02-10	4.04	4.06	—	4.0	0.007	1.05	6.0	0.07	9.79	0.01	2.339	3.72	0.46	5.2	94.6	0.2	-3.46	0.66	0.50	—	4.0	0.003	0.70	0.0	0.04	11.18	0.00	2.033	15.16	0.03	3.8	96.2	0.1	-1.03	1.00	0.71	0.61	—	29527	3741	4	0	0	0	0	logfile
✔	7WV9	32850	2024-02-14	2022-02-10	3.36	3.51	—	3.6	0.004	0.73	0.0	0.05	16.05	0.00	2.206	11.96	0.53	5.0	94.9	0.1	-0.80	0.57	0.67	1.09	3.6	0.003	0.68	0.0	0.04	16.51	0.00	2.194	14.41	3.41	5.7	94.3	0.0	-1.11	0.98	0.60	0.72	0.79	8848	1141	6	0	2	0	0	logfile
✔	7TXZ	26162	2024-02-15	2022-02-10	3.2	3.25	3.11	3.2	0.017	1.50	0.0	0.10	9.78	0.01	2.400	0.32	0.19	1.9	98.0	0.1	0.71	0.71	0.79	4.26	3.2	0.003	0.63	0.0	0.05	12.96	0.00	2.101	7.16	2.07	3.0	96.9	0.1	0.36	0.53	0.71	0.84	3.83	11303	1464	22	0	29	0	0	logfile
✔	7R5H	14320	2024-02-13	2022-02-10	2.59	2.63	2.45	2.7	0.011	1.85	4.0	0.11	11.92	0.01	2.519	0.67	0.00	3.2	96.8	0.0	-1.94	0.42	0.84	6.46	2.7	0.004	0.60	0.0	0.05	16.24	0.00	2.519	2.42	2.16	4.7	95.3	0.0	-2.16	1.15	0.42	0.89	5.49	7440	477	6	0	0	0	3786	logfile
✔	7WVF	32852	2024-02-16	2022-02-10	3.91	4.10	—	4.0	0.014	1.43	0.0	0.04	19.25	0.08	2.252	6.62	0.07	3.3	96.6	0.1	-0.99	0.71	0.69	1.86	4.0	0.004	1.73	0.0	0.04	21.65	0.02	2.115	20.14	2.74	6.0	94.0	0.0	-1.49	2.88	0.76	0.76	1.57	14249	1546	5	46	46	0	0	logfile
✔	7WVo	32855	2024-02-18	2022-02-10	3.41	2.96	—	3.5	0.006	0.83	0.0	0.05	8.31	0.01	2.354	2.02	0.08	3.7	96.2	0.1	-3.17	0.72	0.68	0.86	3.5	0.004	0.73	0.0	0.04	14.44	0.00	2.112	11.28	2.93	3.2	96.8	0.0	-0.35	1.65	0.80	0.79	1.73	23188	2961	3	0	0	0	0	logfile
✔	7TXi	26158	2024-02-20	2022-02-09	3.5	3.86	—	3.7	0.008	0.99	0.0	0.05	12.09	0.01	0.409	13.97	0.00	5.7	93.8	0.5	1.39	0.53	0.82	2.16	3.7	0.004	0.82	0.0	0.05	15.45	0.01	2.149	12.15	2.75	6.7	92.8	0.5	0.50	1.28	0.54	0.84	2.52	28660	3920	20	0	0	0	0	logfile
✔	7WUS	32840	2024-02-13	2022-02-09	3.4	3.78	—	3.8	0.003	0.75	0.0	0.05	17.11	0.00	2.275	11.90	1.00	8.6	91.4	0.0	-2.40	0.69	0.74	1.76	3.7	0.003	0.76	0.0	0.05	17.74	0.00	2.245	12.74	3.01	8.4	91.6	0.0	-1.82	1.45	0.69	0.77	1.91	5450	682	2	0	0	0	0	logfile
✔	7WV5	32846	2024-02-15	2022-02-09	3.1	3.30	—	3.6	0.016	1.54	0.0	0.05	20.42	0.09	2.260	6.14	0.16	3.3	96.7	0.0	-1.03	0.69	0.81	4.11	3.6	0.004	1.75	0.0	0.04	19.38	0.02	2.113	8.00	0.33	4.7	95.3	0.0	-1.62	0.52	0.69	0.83	3.95	12958	1318	16	46	80	0	0	logfile
✔	7WV4	32845	2024-02-19	2022-02-09	3.35	3.68	—	3.6	0.014	1.48	0.0	0.04	20.41	0.08	2.227	7.60	0.00	4.6	95.4	0.0	-1.40	0.79	0.76	2.07	3.4	0.004	1.74	0.0	0.04	21.15	0.02	2.145	16.40	2.00	6.7	93.3	0.0	-2.05	0.93	0.81	0.81	2.23	24490	2636	6	80	80	0	0	logfile
✔	7R4Q	14314	2024-02-25	2022-02-09	3.6	3.14	—	5.7	0.022	3.26	109.0	0.39	16.09	0.02	1.450	30.29	3.30	8.7	91.1	0.2	-2.35	0.48	0.21	-0.05	4.0	0.011	1.13	8.0	0.17	15.41	0.01	1.786	28.61	1.65	8.9	91.0	0.1	-2.25	1.78	0.64	0.59	0.51	51420	3414	13	0	43	0	24182	logfile
✔	7R4T	14316	2024-02-13	2022-02-09	2.75	2.72	2.62	2.8	0.011	1.77	0.0	0.09	11.86	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-2.02	0.42	0.84	4.94	2.8	0.003	0.52	0.0	0.05	15.75	0.00	2.401	1.41	1.01	2.7	97.3	0.0	-1.28	1.57	0.42	0.89	6.20	7074	456	6	0	0	0	3606	logfile
✔	7WV3	32844	2024-02-19	2022-02-09	2.26	2.35	—	2.6	0.015	1.47	0.0	0.05	18.72	0.08	2.241	4.46	0.32	3.6	96.4	0.0	-0.43	0.71	0.82	4.70	2.5	0.004	1.69	0.0	0.04	19.79	0.02	2.184	6.64	1.89	4.5	95.5	0.0	-1.15	1.01	0.71	0.85	4.74	25386	2672	18	80	124	0	0	logfile
✔	7TXJ	26159	2024-02-22	2022-02-09	3.9	4.24	—	4.1	0.006	0.88	0.0	0.04	18.49	0.01	1.473	20.10	0.00	6.7	92.8	0.6	-1.20	0.55	0.83	1.83	4.1	0.005	0.83	0.0	0.04	19.84	0.00	2.059	14.43	4.96	7.2	92.4	0.4	-0.50	1.68	0.56	0.86	1.41	97770	10560	120	720	0	0	0	logfile

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