Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R4T	14316	2024-02-13	2022-02-09	2.75	2.72	2.62	2.8	0.011	1.77	0.0	0.09	11.86	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-2.02	0.42	0.84	4.94	2.8	0.003	0.52	0.0	0.05	15.75	0.00	2.401	1.41	1.01	2.7	97.3	0.0	-1.28	1.57	0.42	0.89	6.20	7074	456	6	0	0	0	3606	logfile
✔	7WV4	32845	2024-02-19	2022-02-09	3.35	3.68	—	3.6	0.014	1.48	0.0	0.04	20.41	0.08	2.227	7.60	0.00	4.6	95.4	0.0	-1.40	0.79	0.76	2.07	3.4	0.004	1.74	0.0	0.04	21.15	0.02	2.145	16.40	2.00	6.7	93.3	0.0	-2.05	0.93	0.81	0.81	2.23	24490	2636	6	80	80	0	0	logfile
✔	7WV5	32846	2024-02-15	2022-02-09	3.1	3.30	—	3.6	0.016	1.54	0.0	0.05	20.42	0.09	2.260	6.14	0.16	3.3	96.7	0.0	-1.03	0.69	0.81	4.11	3.6	0.004	1.75	0.0	0.04	19.38	0.02	2.113	8.00	0.33	4.7	95.3	0.0	-1.62	0.52	0.69	0.83	3.95	12958	1318	16	46	80	0	0	logfile
✔	7TXT	26160	2024-02-16	2022-02-09	3.0	3.54	—	3.4	0.007	0.53	0.0	0.04	12.67	0.00	2.064	8.27	0.00	2.6	97.4	0.0	0.25	0.70	0.86	4.50	3.4	0.003	0.51	0.0	0.04	14.46	0.00	2.037	8.27	1.08	2.6	97.4	0.0	0.45	0.52	0.64	0.88	4.28	12111	772	3	0	1	0	6018	logfile
✔	7TXi	26158	2024-02-20	2022-02-09	3.5	3.86	—	3.7	0.008	0.99	0.0	0.05	12.09	0.01	0.409	13.97	0.00	5.7	93.8	0.5	1.39	0.53	0.82	2.16	3.7	0.004	0.82	0.0	0.05	15.45	0.01	2.149	12.15	2.75	6.7	92.8	0.5	0.50	1.28	0.54	0.84	2.52	28660	3920	20	0	0	0	0	logfile
✔	7WUS	32840	2024-02-13	2022-02-09	3.4	3.78	—	3.8	0.003	0.75	0.0	0.05	17.11	0.00	2.275	11.90	1.00	8.6	91.4	0.0	-2.40	0.69	0.74	1.76	3.7	0.003	0.76	0.0	0.05	17.74	0.00	2.245	12.74	3.01	8.4	91.6	0.0	-1.82	1.45	0.69	0.77	1.91	5450	682	2	0	0	0	0	logfile
✔	7WUB	32827	2024-02-15	2022-02-08	3.0	3.30	—	3.3	0.012	0.95	6.0	0.05	15.24	0.01	1.859	45.64	1.96	5.4	94.2	0.4	1.00	0.70	0.81	1.61	3.3	0.003	0.68	0.0	0.04	15.88	0.00	2.035	10.00	2.30	5.8	94.0	0.1	0.38	0.56	0.69	0.85	1.93	63259	7985	24	0	24	0	0	logfile
✔	7R4H	14312	2024-02-16	2022-02-08	2.34	3.05	2.43	2.9	0.006	1.22	1.0	0.06	19.22	0.01	2.119	5.33	3.93	3.7	96.3	0.0	-3.26	0.80	0.83	2.89	2.9	0.003	0.61	0.0	0.04	18.64	0.00	1.859	10.00	3.50	3.2	96.8	0.0	0.57	1.32	0.80	0.84	3.15	16485	2049	9	0	4	0	0	logfile
✔	7WUi	32836	2024-02-15	2022-02-08	3.1	2.72	—	3.1	0.007	1.11	0.0	0.07	13.96	0.01	2.221	25.88	0.29	4.3	95.7	0.0	-2.70	0.53	0.65	2.45	3.1	0.004	0.63	0.0	0.04	15.95	0.00	2.074	23.13	2.68	4.2	95.8	0.0	-0.99	1.15	0.58	0.74	2.70	9666	1225	7	0	0	0	0	logfile
✔	7R40	14250	2024-02-21	2022-02-08	2.9	2.41	2.92	1.5	0.004	0.73	0.0	0.05	14.00	0.01	2.324	4.76	0.00	4.8	95.2	0.0	-2.66	0.68	0.63	1.24	1.6	0.005	0.78	0.0	0.05	15.88	0.00	2.129	16.34	3.31	6.5	93.5	0.0	-1.55	0.69	0.72	0.70	1.64	30615	3840	24	0	51	0	0	logfile
✔	7WUJ	32837	2024-02-14	2022-02-08	3.3	3.09	—	3.1	0.007	1.00	0.0	0.06	13.92	0.01	2.219	18.92	0.51	7.1	92.9	0.0	-4.30	0.58	0.72	2.43	3.2	0.004	0.69	0.0	0.04	15.54	0.00	2.016	20.20	4.35	5.8	94.2	0.0	-1.11	0.54	0.57	0.73	1.19	8600	1209	6	0	0	0	0	logfile
✔	7WUG	32830	2024-02-17	2022-02-08	3.3	3.43	—	3.4	0.004	0.69	0.0	0.05	13.45	0.00	2.231	3.19	0.11	4.1	95.8	0.0	-0.52	0.79	0.86	2.55	3.4	0.003	0.52	0.0	0.04	15.14	0.00	2.073	4.99	1.14	3.7	96.3	0.0	1.34	0.28	0.78	0.87	2.02	17515	2239	5	0	0	0	0	logfile
✔	7R4i	14313	2024-02-25	2022-02-08	3.2	2.65	—	3.2	0.019	1.00	2.0	0.05	14.61	0.01	1.819	36.30	0.17	13.1	86.9	0.1	-5.90	0.65	0.65	1.25	3.2	0.015	0.72	2.0	0.05	15.39	0.00	1.922	20.65	1.28	7.1	92.8	0.0	-2.55	0.86	0.69	0.73	1.55	51473	3423	13	0	43	0	24148	logfile
✘	7WUH	32832	2024-02-22	2022-02-08	4.7	4.83	—	4.7	0.005	0.93	0.0	0.06	17.31	0.01	2.038	27.65	0.13	12.1	87.7	0.2	-3.10	0.69	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35569	4431	37	0	98	0	0	logfile
✔	7TXD	26157	2024-02-18	2022-02-08	3.87	4.28	—	4.1	0.006	1.06	1.0	0.06	16.17	0.01	2.287	4.53	0.00	4.5	95.5	0.0	-2.19	0.81	0.77	1.64	4.1	0.003	0.68	0.0	0.04	14.43	0.00	2.157	11.64	3.17	4.4	95.6	0.0	-0.47	0.60	0.82	0.81	1.60	20555	2483	40	0	95	0	0	logfile
✔	7WU9	32824	2024-02-14	2022-02-07	3.375	3.51	3.21	3.4	0.002	0.42	0.0	0.04	13.28	0.00	2.137	6.33	0.00	3.0	97.0	0.0	1.21	0.71	0.82	3.04	3.4	0.003	0.59	0.0	0.04	15.36	0.00	2.208	7.68	2.44	2.4	97.6	0.0	1.17	0.78	0.69	0.84	2.26	7369	1030	5	0	0	0	0	logfile
✔	7TX6	26155	2024-02-13	2022-02-07	3.3	3.60	3.29	3.5	0.008	0.90	1.0	0.05	17.01	0.01	2.327	6.69	0.62	3.0	97.0	0.0	2.51	0.53	0.76	2.79	3.5	0.003	0.74	0.0	0.05	14.86	0.01	2.349	6.37	1.88	3.0	97.0	0.0	1.74	1.60	0.54	0.78	2.34	3169	398	1	0	2	0	0	logfile
✔	7WU7	32823	2024-02-16	2022-02-07	3.85	3.66	4.04	3.8	0.005	0.81	0.0	0.05	14.10	0.00	2.146	18.27	0.01	5.3	94.7	0.1	-1.14	0.70	0.65	0.47	3.8	0.003	0.79	0.0	0.04	16.60	0.00	2.070	20.17	3.30	5.9	94.1	0.0	-1.22	1.15	0.70	0.68	0.11	67031	8727	26	0	4	0	0	logfile
✔	7TX7	26156	2024-02-13	2022-02-07	3.8	4.02	3.76	3.9	0.008	0.76	0.0	0.07	21.15	0.00	2.072	6.28	0.00	1.8	98.2	0.0	3.77	0.44	0.74	1.59	3.9	0.003	0.75	0.0	0.04	13.51	0.00	2.235	9.02	2.61	2.0	98.0	0.0	2.33	1.33	0.47	0.75	1.83	3203	397	1	0	4	0	0	logfile
✔	7TW2	26148	2024-02-15	2022-02-06	4.8	4.73	—	3.9	0.003	0.75	0.0	0.04	13.67	0.01	2.177	9.73	0.07	2.2	97.8	0.0	-1.27	0.66	0.72	—	3.8	0.004	0.71	0.0	0.04	13.86	0.00	2.160	15.47	0.00	2.8	97.2	0.0	1.21	1.65	0.66	0.75	—	12838	1619	4	0	2	0	0	logfile

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