Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TDK	41165	2024-02-24	2023-07-03	3.5	4.42	3.27	3.9	0.002	0.43	0.0	0.04	12.43	0.00	2.153	4.71	0.00	2.0	98.0	0.0	5.24	0.64	0.76	1.85	3.9	0.003	0.48	0.0	0.04	12.57	0.00	2.101	8.68	2.01	2.1	97.9	0.0	4.79	1.28	0.65	0.77	2.92	41622	3269	7	0	0	0	19348	logfile
✘	8JYM	36726	2024-02-19	2023-07-03	2.79	3.39	2.76	3.2	0.004	0.55	0.0	0.05	12.78	0.00	0.546	6.93	0.00	3.6	96.4	0.0	0.19	0.83	0.85	3.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24924	3099	12	0	48	0	0	logfile
✔	8TDM	41168	2024-02-24	2023-07-03	3.7	4.38	3.17	3.9	0.002	0.44	0.0	0.04	12.36	0.00	2.343	4.74	0.05	1.7	98.3	0.0	4.47	0.65	0.78	2.02	3.9	0.003	0.48	0.0	0.04	12.83	0.00	2.139	5.65	1.88	1.4	98.6	0.0	4.56	1.26	0.65	0.78	2.05	43029	3269	7	0	0	0	20279	logfile
✔	8JYo	36728	2024-02-24	2023-07-03	3.2	3.48	3.07	3.2	0.005	0.60	0.0	0.05	14.11	0.00	2.061	5.57	0.00	3.6	96.4	0.0	0.32	0.77	0.77	2.00	3.2	0.003	0.59	0.0	0.04	14.48	0.00	2.167	7.50	0.95	3.2	96.8	0.0	0.34	1.16	0.81	0.86	1.78	34233	4193	23	0	76	0	0	logfile
✔	8JYP	36729	2024-02-15	2023-07-03	3.38	4.15	3.49	3.8	0.003	0.62	0.0	0.05	14.64	0.00	2.291	5.18	0.00	2.5	97.5	0.0	0.39	0.84	0.84	2.35	3.8	0.003	0.57	0.0	0.04	13.36	0.00	2.248	7.73	1.58	2.8	97.2	0.0	1.02	1.06	0.84	0.85	2.48	6627	795	7	0	14	0	0	logfile
✔	8JYN	36727	2024-02-22	2023-07-03	3.04	3.39	3.01	3.2	0.003	0.54	0.0	0.05	13.71	0.00	2.203	4.51	0.00	3.7	96.3	0.0	0.42	0.80	0.83	2.17	3.2	0.002	0.56	0.0	0.04	13.83	0.00	2.199	6.09	0.83	3.1	96.8	0.0	0.57	0.52	0.82	0.87	2.06	29000	3577	18	0	59	0	0	logfile
✔	8TDL	41166	2024-02-22	2023-07-03	3.6	4.14	3.01	3.4	0.003	0.49	0.0	0.04	11.61	0.00	2.368	4.65	0.00	1.1	98.9	0.0	3.94	0.73	0.79	2.99	3.4	0.003	0.49	0.0	0.04	12.67	0.00	2.113	5.59	1.25	1.8	98.2	0.0	4.41	0.46	0.72	0.80	3.26	32732	2548	7	0	0	0	15197	logfile
✔	8TDJ	41164	2024-02-24	2023-07-03	3.7	4.17	3.11	3.5	0.002	0.46	0.0	0.04	11.53	0.00	2.162	3.29	0.36	0.7	99.3	0.0	3.76	0.63	0.78	2.50	3.5	0.002	0.47	0.0	0.04	11.96	0.00	2.255	5.73	0.62	0.9	99.1	0.0	4.85	0.35	0.63	0.79	2.49	43162	3269	7	0	0	0	20391	logfile
✔	8TCo	41156	2024-02-15	2023-07-02	2.8	2.31	—	2.1	0.003	0.64	0.0	0.05	14.09	0.01	2.138	8.05	0.00	3.5	96.5	0.0	-0.22	0.76	0.75	3.03	2.1	0.004	0.67	0.0	0.05	15.61	0.00	2.115	11.68	2.21	4.2	95.8	0.0	-0.11	1.02	0.77	0.77	2.75	13222	1633	12	0	15	0	0	logfile
✔	8JY4	36719	2024-02-18	2023-07-02	3.58	4.95	3.68	4.2	0.003	0.55	0.0	0.04	15.96	0.00	1.980	6.92	0.00	3.0	96.9	0.1	-0.52	0.62	0.78	0.68	4.2	0.003	0.64	0.0	0.04	16.09	0.00	2.086	13.89	2.28	3.6	96.3	0.1	1.01	1.35	0.62	0.80	0.40	22246	1383	1	0	0	0	11252	logfile
✔	8JXQ	36709	2024-02-18	2023-07-01	3.32	4.45	3.31	3.8	0.007	0.60	0.0	0.04	14.81	0.01	2.035	4.63	0.41	1.4	98.5	0.1	-1.95	0.61	0.75	1.68	3.9	0.003	0.63	0.0	0.04	15.16	0.00	1.991	7.53	1.71	1.4	98.6	0.0	0.42	0.76	0.61	0.81	1.71	22397	1388	2	0	2	0	11287	logfile
✔	8JXU	36713	2024-02-18	2023-07-01	3.55	4.88	3.65	4.2	0.004	0.58	0.0	0.04	16.10	0.00	1.797	7.60	0.24	4.8	95.2	0.0	-1.05	0.63	0.77	0.89	4.2	0.004	0.62	0.0	0.04	16.12	0.00	1.806	15.19	2.08	4.8	95.2	0.0	-0.25	0.81	0.62	0.80	0.61	22749	1410	2	0	3	0	11485	logfile
✔	8PN8	17778	2024-02-22	2023-06-30	2.31	2.78	2.42	2.7	0.035	1.37	0.0	0.05	11.04	0.00	1.608	8.27	0.43	1.0	99.0	0.0	0.98	0.69	0.89	5.17	2.6	0.004	0.55	0.0	0.05	14.49	0.00	2.162	8.64	1.68	2.0	98.0	0.0	0.56	0.41	0.66	0.89	5.04	34298	4314	36	0	12	866	0	logfile
✔	8TCF	41153	2024-02-13	2023-06-30	2.9	3.25	2.96	3.2	0.014	1.40	0.0	0.09	12.16	0.01	1.804	0.72	0.41	3.7	96.2	0.1	0.27	0.75	0.76	3.61	3.2	0.003	0.65	0.0	0.05	14.91	0.00	1.937	8.81	2.03	3.6	96.3	0.1	0.35	0.76	0.75	0.81	3.20	7050	878	9	0	22	0	0	logfile
✔	8JX7	36691	2024-02-15	2023-06-30	3.6	4.97	3.68	4.2	0.003	0.65	0.0	0.04	17.21	0.00	2.057	8.94	0.00	2.3	97.7	0.0	0.20	0.63	0.77	0.93	4.2	0.003	0.92	0.0	0.05	16.84	0.00	2.140	16.51	2.07	2.1	97.9	0.0	0.39	1.71	0.63	0.84	0.90	11237	1416	1	0	0	0	0	logfile
✘	8PN7	17777	2024-02-22	2023-06-30	2.03	2.46	2.13	2.4	0.044	1.46	0.0	0.04	13.01	0.00	1.664	8.62	0.35	1.5	98.5	0.0	1.20	0.72	0.85	5.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	34872	4308	36	0	12	1476	0	logfile
✔	8TCG	41154	2024-02-15	2023-06-30	3.4	3.89	3.42	3.8	0.014	1.68	0.0	0.08	12.48	0.01	1.500	0.34	0.16	3.5	96.5	0.0	0.10	0.76	0.73	2.15	3.8	0.004	0.62	0.0	0.04	14.58	0.00	1.900	7.63	1.27	6.4	93.4	0.1	-0.56	2.19	0.78	0.78	2.79	11597	754	6	0	13	0	5652	logfile
✔	8JWi	36684	2024-02-14	2023-06-29	2.94	3.38	3.21	3.4	0.005	0.81	0.0	0.04	9.61	0.00	2.035	1.42	0.00	6.7	93.3	0.0	-3.73	0.65	0.78	2.96	3.4	0.003	0.63	0.0	0.04	14.63	0.00	1.941	3.93	1.81	7.5	92.5	0.0	-0.75	0.63	0.67	0.83	2.27	9431	1164	2	0	4	0	0	logfile
✔	8JWF	36681	2024-02-14	2023-06-29	3.64	4.25	3.77	4.0	0.007	0.80	0.0	0.05	10.45	0.01	2.208	3.05	0.09	7.2	92.8	0.0	-3.42	0.69	0.74	1.48	4.0	0.003	0.63	0.0	0.04	13.93	0.00	2.122	8.94	2.58	5.4	94.6	0.0	0.43	1.35	0.71	0.76	0.82	9717	1204	2	0	1	0	0	logfile
✔	8PMQ	17764	2024-02-13	2023-06-29	3.53	3.56	3.44	3.6	0.005	0.74	0.0	0.05	14.38	0.01	1.498	6.53	0.50	5.9	94.1	0.0	0.65	0.78	0.84	1.96	3.6	0.004	0.59	0.0	0.04	16.01	0.00	2.219	7.52	3.53	5.0	95.0	0.0	0.82	1.45	0.77	0.84	1.65	7746	1007	6	0	2	0	0	logfile

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