Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JWF	36681	2024-02-14	2023-06-29	3.64	4.25	3.77	4.0	0.007	0.80	0.0	0.05	10.45	0.01	2.208	3.05	0.09	7.2	92.8	0.0	-3.42	0.69	0.74	1.48	4.0	0.003	0.63	0.0	0.04	13.93	0.00	2.122	8.94	2.58	5.4	94.6	0.0	0.43	1.35	0.71	0.76	0.82	9717	1204	2	0	1	0	0	logfile
✘	8JVM	36677	2024-02-13	2023-06-28	3.86	4.13	3.89	3.9	0.006	1.08	1.0	0.06	14.54	0.01	2.138	27.03	1.75	16.3	82.1	1.6	-3.56	0.64	0.54	0.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3726	498	3	0	0	0	0	logfile
✔	8TB7	41145	2024-02-16	2023-06-28	2.94	3.15	2.96	3.2	0.004	0.71	0.0	0.05	13.76	0.00	2.159	5.57	0.00	5.5	94.5	0.0	0.07	0.62	0.77	2.73	3.2	0.003	0.58	0.0	0.05	16.34	0.00	2.122	5.13	1.50	5.6	94.4	0.0	0.39	0.45	0.63	0.79	2.24	13468	879	5	0	1	1	6676	logfile
✔	8PM4	17757	2024-02-13	2023-06-28	2.93	3.28	3.02	3.2	0.007	0.63	0.0	0.04	20.61	0.01	2.220	11.13	1.32	1.7	98.3	0.0	1.17	0.74	0.82	2.99	3.2	0.003	0.53	0.0	0.04	21.09	0.00	2.186	9.82	1.54	1.5	98.5	0.0	2.14	1.15	0.73	0.82	2.44	6624	604	4	96	0	0	0	logfile
✔	8JW4	36679	2024-02-14	2023-06-28	3.13	3.85	3.39	3.8	0.005	0.76	0.0	0.05	9.53	0.00	2.214	2.01	0.28	8.2	91.8	0.0	-4.11	0.63	0.70	2.66	3.7	0.002	0.61	0.0	0.04	14.12	0.00	2.198	5.25	1.86	5.8	94.2	0.0	-1.06	1.34	0.63	0.73	1.14	9582	1191	1	0	0	0	0	logfile
✔	8PM2	17756	2024-02-13	2023-06-28	2.92	2.98	2.94	3.3	0.006	0.78	0.0	0.05	13.03	0.01	2.132	4.04	0.00	2.4	97.6	0.0	0.56	0.74	0.80	3.49	3.3	0.004	0.64	0.0	0.04	16.01	0.00	2.101	9.25	3.37	3.0	97.0	0.0	1.31	0.54	0.74	0.84	3.01	7821	1009	6	0	2	0	0	logfile
✔	8PMJ	17761	2024-02-14	2023-06-28	2.81	2.56	2.83	2.8	0.004	0.64	0.0	0.05	15.66	0.00	1.958	6.81	0.00	2.4	97.6	0.0	0.56	0.64	0.83	3.00	2.8	0.002	0.54	0.0	0.04	16.49	0.00	2.020	5.23	2.46	2.2	97.8	0.0	1.21	0.37	0.63	0.84	2.54	8985	1133	2	0	9	3	0	logfile
✘	8JVH	36674	2024-02-14	2023-06-28	3.19	3.79	3.33	3.7	0.005	0.78	0.0	0.05	9.56	0.00	2.195	2.24	0.18	8.6	91.4	0.0	-4.48	0.65	0.74	1.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9699	1205	1	0	0	0	0	logfile
✔	8PMD	17759	2024-02-14	2023-06-28	2.95	2.88	2.91	2.9	0.004	0.66	0.0	0.04	18.21	0.00	1.353	11.85	0.21	1.8	98.2	0.0	1.07	0.62	0.80	2.46	2.9	0.005	0.67	0.0	0.05	18.71	0.00	1.881	11.35	2.89	2.0	98.0	0.0	0.96	0.47	0.61	0.80	2.51	8844	1129	2	0	4	2	0	logfile
✔	8TB0	41144	2024-02-15	2023-06-28	3.47	3.76	3.50	3.8	0.003	0.65	0.0	0.04	14.04	0.00	0.884	8.94	0.11	5.6	94.4	0.0	-1.82	0.62	0.73	2.14	3.8	0.003	0.62	0.0	0.04	16.10	0.00	2.129	9.89	2.54	6.1	93.9	0.0	-1.33	0.72	0.64	0.77	1.82	8460	1090	4	0	0	0	0	logfile
✔	8PM6	17758	2024-02-13	2023-06-28	3.22	3.42	3.06	3.4	0.005	0.80	1.0	0.05	18.41	0.01	2.200	14.16	0.42	4.8	95.2	0.0	0.94	0.49	0.75	1.34	3.4	0.003	0.57	0.0	0.04	16.68	0.00	2.198	8.83	4.04	5.2	94.8	0.0	1.16	1.72	0.57	0.81	1.24	7029	872	2	0	9	0	0	logfile
✔	8TAZ	41143	2024-02-20	2023-06-28	3.75	4.14	4.15	3.9	0.017	0.94	1.0	0.05	15.30	0.01	2.119	15.61	0.03	7.3	92.4	0.3	-1.61	0.70	0.60	1.06	3.9	0.011	0.76	0.0	0.05	16.56	0.00	2.137	12.12	3.40	7.5	92.4	0.1	-1.18	2.62	0.75	0.76	1.32	28269	3591	4	0	0	0	0	logfile
✔	8JUZ	36667	2024-02-19	2023-06-27	4.29	4.11	4.43	3.9	0.003	0.72	0.0	0.04	15.18	0.00	2.131	9.33	0.07	6.6	93.3	0.1	-0.25	0.66	0.49	—	3.9	0.003	0.69	0.0	0.04	14.65	0.00	2.097	10.44	0.00	6.2	93.8	0.1	-0.25	2.00	0.79	0.72	—	25274	3155	12	0	6	0	0	logfile
✔	8TAU	41142	2024-02-13	2023-06-27	3.5	3.03	3.36	1.8	0.006	0.79	0.0	0.00	7.52	0.01	2.188	4.55	0.00	2.1	97.9	0.0	-2.34	0.73	0.66	—	2.3	0.003	0.67	0.0	0.00	4.65	0.00	2.053	9.28	0.00	11.9	88.1	0.0	-2.02	0.69	0.78	0.73	—	54106	9002	25	0	4	0	18087	logfile
✔	8JUY	36666	2024-02-19	2023-06-27	4.34	4.24	4.46	4.2	0.005	0.86	0.0	0.05	15.36	0.01	1.353	19.63	0.15	8.7	91.2	0.1	-1.58	0.73	0.63	—	4.1	0.003	0.72	0.0	0.04	14.48	0.00	2.027	12.00	0.00	7.3	92.6	0.1	-0.88	1.44	0.78	0.72	—	24554	3069	11	0	6	0	0	logfile
✔	8JUW	36665	2024-02-19	2023-06-27	3.79	4.06	4.06	3.9	0.006	0.80	0.0	0.05	15.49	0.01	2.105	9.39	0.04	8.5	91.4	0.2	-1.15	0.80	0.74	2.19	3.9	0.003	0.64	0.0	0.04	16.64	0.00	2.151	8.66	1.84	6.4	93.5	0.1	0.11	1.31	0.85	0.83	1.76	25282	3156	11	0	6	0	0	logfile
✔	8TAR	41140	2024-02-13	2023-06-27	4.0	3.08	3.83	2.0	0.005	0.76	0.0	0.06	7.03	0.00	2.106	1.76	0.00	1.8	98.2	0.0	-1.85	0.74	0.68	—	2.7	0.003	0.67	0.0	0.04	4.46	0.00	2.092	6.48	0.00	10.2	89.8	0.0	-1.12	1.26	0.78	0.76	—	54010	8984	24	0	4	0	18053	logfile
✔	8TAH	41135	2024-02-16	2023-06-27	2.89	2.18	3.39	2.1	0.005	0.66	0.0	0.05	13.05	0.01	2.043	2.22	4.46	4.0	96.0	0.0	-2.21	0.66	0.74	3.58	1.9	0.004	0.53	0.0	0.04	15.54	0.00	1.865	5.82	3.91	2.9	97.0	0.1	0.73	0.94	0.80	0.83	3.17	14978	1884	10	0	4	0	0	logfile
✔	8PKP	17751	2024-02-15	2023-06-27	3.2	4.15	3.27	3.5	0.006	0.67	0.0	0.04	17.68	0.01	2.193	11.76	0.52	2.7	97.3	0.0	0.64	0.87	0.81	1.59	3.5	0.003	0.62	0.0	0.04	17.73	0.00	2.099	13.23	2.29	2.7	97.3	0.0	1.54	0.54	0.90	0.86	1.41	64691	8135	20	0	1	0	0	logfile
✔	8TAo	41139	2024-02-15	2023-06-27	2.9	3.35	—	3.1	0.004	0.52	0.0	0.04	13.36	0.00	2.231	4.77	0.00	3.6	96.4	0.0	0.43	0.83	0.82	3.16	3.1	0.003	0.53	0.0	0.04	14.98	0.00	2.235	4.51	1.04	3.9	96.1	0.0	0.70	0.27	0.85	0.86	2.82	13422	1794	6	0	3	0	0	logfile

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