Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TP9	26049	2024-02-18	2022-01-25	3.48	3.86	—	3.5	0.014	1.77	6.0	0.10	12.37	0.01	2.518	0.02	0.94	6.9	92.4	0.7	-0.96	0.84	0.84	3.41	3.5	0.005	0.65	0.0	0.04	13.09	0.00	2.169	5.67	0.85	5.5	94.4	0.1	0.09	0.48	0.85	0.87	2.72	23199	2983	18	0	58	0	0	logfile
✔	7QWS	14193	2024-02-20	2022-01-25	3.4	3.09	—	7.2	0.002	0.46	0.0	0.03	22.90	0.00	2.011	9.44	1.65	3.7	96.3	0.0	0.47	0.23	0.02	-0.02	3.0	0.004	0.88	0.0	0.04	24.72	0.01	0.987	26.15	2.43	8.3	91.7	0.1	-2.38	2.16	0.52	0.59	0.52	137913	7047	55	3769	126	0	0	logfile
✔	7TPK	26058	2024-02-13	2022-01-25	3.4	3.41	—	3.4	0.011	1.40	1.0	0.08	9.83	0.01	2.528	2.12	0.00	4.7	95.3	0.0	-0.98	0.60	0.72	4.39	3.4	0.002	0.56	0.0	0.04	14.88	0.00	2.386	3.89	0.72	2.6	97.4	0.0	-0.86	1.24	0.64	0.80	3.33	1484	194	1	0	1	0	0	logfile
✔	7QWR	14192	2024-02-19	2022-01-25	2.9	2.44	—	2.9	0.002	0.47	0.0	0.03	22.87	0.00	2.054	7.58	0.72	5.1	94.8	0.1	-0.61	0.48	0.71	2.26	2.7	0.008	0.94	0.0	0.05	24.15	0.01	1.795	9.20	6.93	7.3	92.6	0.1	-1.29	1.42	0.53	0.82	2.98	134576	6621	55	3769	126	0	0	logfile
✔	7TPA	26050	2024-02-18	2022-01-25	3.6	3.99	—	3.6	0.013	1.75	3.0	0.10	12.53	0.01	2.510	0.00	1.11	6.5	92.8	0.8	-1.19	0.84	0.85	2.96	3.6	0.006	0.68	0.0	0.04	12.98	0.00	2.116	5.67	1.23	5.7	94.1	0.2	-0.01	0.47	0.84	0.86	2.67	23199	2983	18	0	58	0	0	logfile
✔	7TPR	26062	2024-02-21	2022-01-25	2.39	2.27	2.48	2.1	0.004	0.61	0.0	0.04	12.51	0.00	2.103	8.50	0.14	6.5	93.1	0.5	-1.21	0.73	0.73	3.55	2.1	0.003	0.66	0.0	0.05	14.92	0.00	2.132	8.61	1.17	5.7	94.1	0.2	-0.63	1.03	0.77	0.79	3.13	31738	4074	8	0	0	0	0	logfile
✘	7ToP	26034	2024-02-17	2022-01-24	2.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✔	7WPQ	32688	2024-02-23	2022-01-24	3.267	3.39	—	3.3	0.007	0.93	0.0	0.06	10.51	0.01	2.022	3.07	0.29	10.0	89.7	0.3	-4.59	0.77	0.75	2.77	3.3	0.003	0.70	0.0	0.04	15.09	0.00	2.120	8.26	2.45	6.6	93.4	0.0	-2.21	2.36	0.79	0.78	2.34	36576	4756	16	0	36	0	0	logfile
✔	7WPo	32686	2024-02-13	2022-01-24	3.5	3.78	—	3.7	0.014	1.64	6.0	0.11	11.40	0.01	2.359	5.22	0.48	2.6	97.3	0.1	-0.13	0.70	0.79	3.06	3.7	0.003	0.61	0.0	0.04	13.68	0.00	2.254	6.45	1.93	1.6	98.4	0.0	2.28	1.77	0.69	0.84	2.23	6829	867	8	0	17	0	0	logfile
✘	7ToS	26037	2024-02-24	2022-01-24	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✘	7Too	26033	2024-02-17	2022-01-24	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✔	7ToV	26039	2024-02-18	2022-01-24	3.16	3.39	—	3.2	0.014	1.80	5.0	0.10	12.15	0.01	2.515	0.07	0.89	5.8	93.7	0.4	-0.81	0.83	0.86	4.13	3.2	0.003	0.59	0.0	0.04	12.81	0.00	2.114	4.23	1.11	4.0	95.9	0.1	0.33	1.19	0.84	0.87	3.32	23199	2983	18	0	58	0	0	logfile
✔	7WQ3	32698	2024-02-14	2022-01-24	2.7	2.90	—	3.2	0.011	0.72	0.0	0.06	9.42	0.00	2.189	5.16	0.40	1.0	99.0	0.0	-1.34	0.39	0.47	0.48	3.0	0.002	0.56	0.0	0.04	15.09	0.00	2.207	5.97	3.95	2.2	97.8	0.0	1.08	1.87	0.63	0.82	2.99	9209	1160	7	0	5	0	0	logfile
✔	7WPZ	32693	2024-02-13	2022-01-24	3.8	3.48	—	3.6	0.013	1.41	1.0	0.11	11.15	0.01	2.431	1.73	0.74	2.2	97.4	0.4	-0.13	0.75	0.74	2.80	3.6	0.003	0.60	0.0	0.04	12.91	0.00	2.208	5.00	1.49	3.1	96.9	0.0	1.47	1.39	0.79	0.80	2.30	5756	787	8	0	15	0	0	logfile
✔	7TP1	26045	2024-02-19	2022-01-24	3.81	4.30	—	3.8	0.014	1.75	5.0	0.10	13.20	0.01	2.523	0.21	1.39	6.7	92.4	0.9	-1.32	0.85	0.84	1.81	3.8	0.005	0.67	0.0	0.04	13.49	0.00	2.050	8.51	1.05	5.3	94.7	0.0	0.03	1.19	0.86	0.85	1.62	24646	3046	20	0	61	0	0	logfile
✔	7WPR	32689	2024-02-26	2022-01-24	4.39	5.44	—	4.2	0.007	0.95	0.0	0.05	10.38	0.01	1.865	4.30	0.17	9.6	90.2	0.2	-4.16	0.90	0.77	—	4.2	0.003	0.73	0.0	0.04	11.52	0.00	2.070	18.39	0.10	8.5	91.5	0.0	-1.90	2.38	0.91	0.79	—	145764	19024	64	0	98	0	0	logfile
✔	7ToE	26030	2024-02-16	2022-01-24	3.0	3.29	—	3.3	0.003	0.59	0.0	0.04	14.04	0.00	2.201	8.94	0.12	3.9	96.0	0.1	-0.13	0.72	0.83	3.59	3.3	0.003	0.60	0.0	0.04	16.95	0.00	2.133	10.14	1.59	4.0	96.0	0.0	-0.17	0.47	0.74	0.87	3.22	15100	1868	4	0	0	0	0	logfile
✔	7TP0	26043	2024-02-19	2022-01-24	3.57	3.99	—	3.6	0.014	1.76	4.0	0.10	13.12	0.01	2.527	0.27	1.62	6.6	92.6	0.8	-1.08	0.85	0.85	2.66	3.6	0.005	0.66	0.0	0.04	13.44	0.00	2.011	6.96	1.13	5.5	94.3	0.2	0.10	1.18	0.86	0.86	2.26	24589	3040	20	0	61	0	0	logfile
✔	7WPS	32690	2024-02-18	2022-01-24	4.32	4.69	—	4.2	0.007	0.92	0.0	0.06	10.40	0.01	1.790	3.99	0.35	10.0	89.8	0.2	-4.55	0.72	0.47	—	4.1	0.003	0.71	0.0	0.04	11.69	0.00	2.131	13.10	0.12	6.9	93.1	0.0	-1.85	2.69	0.91	0.79	—	127624	16646	56	0	98	0	0	logfile
✔	7ToX	26040	2024-02-19	2022-01-24	3.62	4.01	—	3.6	0.014	1.76	1.0	0.10	13.09	0.01	2.515	0.14	1.35	6.7	92.8	0.5	-1.12	0.85	0.84	2.42	3.6	0.003	0.59	0.0	0.04	13.61	0.00	2.182	6.38	1.35	4.2	95.7	0.1	0.23	0.49	0.85	0.85	2.07	24618	3041	20	0	61	0	0	logfile

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