Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TMT	26002	2024-02-13	2022-01-20	3.8	4.02	—	3.9	0.005	0.65	0.0	0.04	12.45	0.00	2.109	10.83	0.19	4.7	95.2	0.1	1.20	0.86	0.85	2.16	3.9	0.005	0.65	0.0	0.04	14.36	0.00	2.116	11.59	2.92	4.7	95.2	0.1	0.82	1.26	0.86	0.86	1.82	53433	8221	32	0	1	0	0	logfile
✘	7TM0	25992	2024-02-20	2022-01-19	3.1	3.24	3.21	3.2	0.010	1.37	0.0	0.08	8.59	0.01	2.264	1.47	0.17	2.4	97.6	0.0	0.62	0.73	0.76	3.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27963	4401	19	0	52	0	0	logfile
✔	7TLZ	25991	2024-02-13	2022-01-19	3.3	3.47	3.24	3.4	0.011	1.30	0.0	0.08	9.09	0.01	2.581	0.87	0.31	2.8	97.2	0.0	1.02	0.68	0.81	5.51	3.4	0.006	0.70	0.0	0.05	12.25	0.00	2.297	4.51	0.94	4.6	95.4	0.0	0.55	1.00	0.68	0.87	5.92	3621	475	3	0	6	0	0	logfile
✔	7QV6	14168	2024-02-13	2022-01-19	3.5	3.33	3.32	3.5	0.011	0.59	0.0	0.05	11.56	0.00	2.480	1.86	0.00	1.1	98.9	0.0	-1.85	0.39	0.86	5.72	3.5	0.002	0.40	0.0	0.06	11.88	0.00	2.320	1.65	0.79	0.0	100.0	0.0	0.64	0.40	0.40	0.86	5.54	4842	306	18	0	0	0	2556	logfile
✘	7QV7	14169	2024-02-24	2022-01-19	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	41236	5276	32	0	58	0	0	logfile
✔	7WNQ	32633	2024-02-14	2022-01-19	2.7	2.91	2.72	3.0	0.012	1.20	6.0	0.07	9.17	0.01	2.155	1.80	0.63	3.6	96.4	0.0	-5.53	0.68	0.86	4.76	3.0	0.003	0.61	0.0	0.04	14.07	0.00	2.261	3.54	2.01	2.5	97.5	0.0	1.82	1.24	0.66	0.86	3.80	8847	1104	3	0	0	0	0	logfile
✔	7QV1	14157	2024-02-21	2022-01-19	3.5	3.50	—	3.2	0.002	0.51	0.0	0.03	23.66	0.00	1.575	5.96	0.41	5.1	94.8	0.1	-2.06	0.73	0.82	1.19	3.2	0.004	0.66	0.0	0.04	23.82	0.00	2.026	15.20	5.64	7.6	92.4	0.1	-1.13	3.29	0.75	0.85	1.21	140774	5254	53	4635	24	0	0	logfile
✔	7TMC	25995	2024-02-13	2022-01-19	3.25	3.24	2.95	4.2	0.005	0.72	0.0	0.07	18.02	0.01	2.152	13.78	0.00	9.5	90.5	0.0	-4.08	0.21	0.31	-0.39	3.5	0.003	0.84	0.0	0.06	15.57	0.01	2.182	16.12	5.29	9.5	90.5	0.0	-4.13	1.95	0.34	0.75	3.02	3426	405	6	0	12	0	0	logfile
✔	7TMo	25997	2024-02-21	2022-01-19	3.3	3.50	—	3.4	0.003	0.51	0.0	0.04	12.53	0.00	1.942	8.59	0.18	2.9	97.1	0.0	1.41	0.77	0.82	3.41	3.4	0.004	0.54	0.0	0.04	14.10	0.00	1.813	8.85	2.56	3.5	96.5	0.0	1.15	1.07	0.79	0.85	3.29	31559	4816	17	0	4	0	0	logfile
✔	7TMR	26000	2024-02-14	2022-01-19	3.5	3.65	—	3.5	0.003	0.62	0.0	0.04	12.90	0.00	2.124	12.17	0.12	3.3	96.7	0.0	1.40	0.75	0.79	2.12	3.5	0.003	0.64	0.0	0.04	15.45	0.00	2.056	13.63	3.71	3.3	96.7	0.0	1.08	1.26	0.76	0.79	1.76	57795	8224	32	0	1	0	0	logfile
✔	7QV2	14158	2024-02-22	2022-01-19	3.5	3.59	—	3.2	0.002	0.48	0.0	0.03	23.76	0.00	1.833	5.98	0.25	4.7	95.2	0.1	-1.90	0.77	0.82	1.24	3.2	0.003	0.65	0.0	0.03	23.83	0.00	1.984	14.65	4.85	7.1	92.9	0.1	-1.06	3.65	0.78	0.86	1.11	142856	5268	53	4726	24	0	0	logfile
✔	7TLY	25990	2024-02-13	2022-01-19	3.0	3.01	2.93	3.0	0.010	1.32	2.0	0.08	12.98	0.00	2.556	1.69	0.00	2.5	97.5	0.0	0.36	0.64	0.76	4.98	3.0	0.003	0.60	0.0	0.04	13.34	0.01	2.213	4.05	2.46	2.0	98.0	0.0	-1.14	1.03	0.68	0.83	5.07	3105	408	4	0	4	0	0	logfile
✔	7TMP	25998	2024-02-21	2022-01-19	3.3	3.47	—	3.4	0.004	0.54	0.0	0.04	12.38	0.00	1.989	8.91	0.38	3.5	96.5	0.1	1.23	0.78	0.84	3.41	3.4	0.004	0.55	0.0	0.04	14.17	0.00	1.916	8.96	2.35	3.2	96.8	0.0	1.11	0.27	0.80	0.86	2.96	32105	4805	16	0	2	0	0	logfile
✔	7QV5	14167	2024-02-13	2022-01-19	3.0	3.03	1.88	3.0	0.010	0.44	0.0	0.06	9.44	0.00	2.689	1.08	0.00	6.2	93.8	0.0	-2.64	0.46	0.86	7.89	3.1	0.002	0.36	0.0	0.06	12.41	0.00	2.576	1.08	0.00	2.1	97.9	0.0	-1.49	0.86	0.50	0.90	6.84	5562	342	27	0	18	0	2997	logfile
✔	7TMM	25996	2024-02-22	2022-01-19	3.5	3.65	—	3.6	0.005	0.54	0.0	0.04	11.40	0.00	2.195	7.40	0.04	3.8	96.2	0.0	1.51	0.82	0.84	3.00	3.6	0.003	0.52	0.0	0.04	12.92	0.00	2.170	7.19	2.49	3.2	96.8	0.0	1.64	1.05	0.82	0.84	2.51	33713	5236	17	0	1	0	0	logfile
✔	7TMQ	25999	2024-02-21	2022-01-19	3.3	3.42	—	3.4	0.004	0.57	2.0	0.04	12.67	0.00	2.026	9.95	0.38	2.7	97.3	0.0	1.28	0.77	0.83	3.33	3.4	0.003	0.52	0.0	0.04	14.02	0.00	1.988	9.28	2.27	2.4	97.6	0.0	1.33	0.26	0.79	0.86	2.88	31642	4736	16	0	2	0	0	logfile
✔	7TL1	25983	2024-02-19	2022-01-18	3.5	3.79	3.47	3.6	0.004	0.69	0.0	0.05	11.66	0.01	2.302	3.28	0.00	3.6	96.4	0.0	-0.64	0.85	0.83	2.56	3.6	0.004	0.52	0.0	0.04	12.32	0.00	2.150	6.64	0.51	3.8	96.2	0.0	0.37	0.28	0.85	0.85	2.44	25109	3138	11	0	38	0	0	logfile
✘	7TLB	25986	2024-02-18	2022-01-18	3.06	3.26	—	3.2	0.012	1.74	1.0	0.09	13.14	0.01	2.531	0.11	0.82	5.3	94.7	0.1	-1.00	0.54	0.56	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22806	2916	3	0	0	0	0	logfile
✔	7QUN	14149	2024-02-18	2022-01-18	2.1	2.22	—	2.2	0.005	0.72	0.0	0.05	15.64	0.00	2.230	4.57	0.88	2.1	97.9	0.0	0.29	0.63	0.77	5.98	2.2	0.003	0.61	0.0	0.05	15.44	0.00	2.266	1.98	0.92	1.7	98.3	0.0	0.25	0.21	0.74	0.86	6.08	21094	2773	8	0	4	0	0	logfile
✘	7TLD	25988	2024-02-18	2022-01-18	2.89	3.35	—	3.3	0.013	1.80	0.0	0.09	13.31	0.01	2.524	0.07	0.94	5.2	94.6	0.2	-1.25	0.33	0.48	3.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22812	2916	3	0	0	0	0	logfile

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