Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TL1	25983	2024-02-19	2022-01-18	3.5	3.79	3.47	3.6	0.004	0.69	0.0	0.05	11.66	0.01	2.302	3.28	0.00	3.6	96.4	0.0	-0.64	0.85	0.83	2.56	3.6	0.004	0.52	0.0	0.04	12.32	0.00	2.150	6.64	0.51	3.8	96.2	0.0	0.37	0.28	0.85	0.85	2.44	25109	3138	11	0	38	0	0	logfile
✔	7QUQ	14151	2024-02-17	2022-01-18	2.6	2.44	—	2.8	0.009	0.94	0.0	0.05	13.76	0.01	2.144	15.78	0.10	4.7	95.3	0.0	-1.38	0.64	0.65	1.63	2.8	0.004	0.74	0.0	0.05	17.03	0.01	2.090	23.40	2.83	5.4	94.6	0.0	-1.14	1.95	0.67	0.70	1.45	19095	2457	12	0	6	0	0	logfile
✘	7TLB	25986	2024-02-18	2022-01-18	3.06	3.26	—	3.2	0.012	1.74	1.0	0.09	13.14	0.01	2.531	0.11	0.82	5.3	94.7	0.1	-1.00	0.54	0.56	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22806	2916	3	0	0	0	0	logfile
✔	7TLA	25985	2024-02-18	2022-01-18	3.13	3.36	—	3.3	0.012	1.76	3.0	0.09	13.37	0.01	2.522	0.09	1.12	6.0	93.7	0.3	-1.09	0.58	0.61	4.05	3.3	0.006	0.65	0.0	0.05	14.77	0.00	2.183	6.89	1.90	4.0	96.0	0.0	0.02	0.60	0.76	0.85	3.28	23052	2948	3	0	0	0	0	logfile
✔	7TLJ	25989	2024-02-20	2022-01-18	2.91	3.77	—	3.6	0.007	0.80	0.0	0.05	13.86	0.01	2.009	3.99	1.34	3.1	96.9	0.1	0.26	0.75	0.86	4.48	3.6	0.003	0.56	0.0	0.04	14.23	0.00	1.980	6.55	0.78	2.4	97.5	0.1	1.56	0.47	0.68	0.86	3.98	27753	1774	14	0	12	0	13511	logfile
✔	7QUN	14149	2024-02-18	2022-01-18	2.1	2.22	—	2.2	0.005	0.72	0.0	0.05	15.64	0.00	2.230	4.57	0.88	2.1	97.9	0.0	0.29	0.63	0.77	5.98	2.2	0.003	0.61	0.0	0.05	15.44	0.00	2.266	1.98	0.92	1.7	98.3	0.0	0.25	0.21	0.74	0.86	6.08	21094	2773	8	0	4	0	0	logfile
✔	7TLC	25987	2024-02-18	2022-01-18	2.83	3.28	—	3.2	0.013	1.82	3.0	0.10	13.37	0.02	2.518	0.07	1.54	5.3	94.5	0.2	-1.18	0.34	0.47	4.12	3.2	0.003	0.59	0.0	0.04	15.12	0.00	2.130	5.75	2.12	3.2	96.8	0.0	0.31	0.54	0.50	0.70	3.41	23058	2948	3	0	0	0	0	logfile
✔	7WN3	32620	2024-02-23	2022-01-17	3.29	3.41	—	3.6	0.007	1.11	0.0	0.09	10.59	0.01	2.016	5.21	0.44	11.9	87.9	0.2	-4.63	0.75	0.66	1.28	3.3	0.005	0.98	2.0	0.05	15.07	0.00	2.012	12.74	2.54	8.1	91.9	0.0	-2.47	1.52	0.80	0.78	1.48	36584	4756	16	0	36	0	0	logfile
✔	7TKT	25981	2024-02-15	2022-01-17	3.6	3.75	3.75	3.7	0.007	1.26	0.0	0.04	21.05	0.01	2.224	6.30	0.00	4.7	95.3	0.0	0.63	0.72	0.81	2.05	3.8	0.003	0.66	0.0	0.04	18.26	0.00	2.185	8.09	0.07	5.5	94.5	0.0	1.10	1.94	0.71	0.82	2.23	13252	1560	8	0	56	0	0	logfile
✔	7TKP	25977	2024-02-18	2022-01-17	4.6	7.57	4.97	4.4	0.019	2.20	0.0	0.00	6.68	0.01	2.352	0.12	0.00	4.2	94.5	1.3	-0.50	0.60	0.63	—	4.4	0.004	0.83	0.0	0.00	5.67	0.00	2.069	13.64	0.00	9.3	90.5	0.2	-0.09	0.76	0.78	0.81	—	20228	5056	27	0	0	0	0	logfile
✔	7TJV	25933	2024-02-18	2022-01-17	3.6	3.57	3.65	3.6	0.003	0.66	0.0	0.05	12.84	0.01	1.836	2.06	0.00	1.9	98.1	0.0	0.21	0.62	0.81	2.69	3.6	0.003	0.62	0.0	0.04	16.31	0.00	1.911	8.32	2.71	2.1	97.9	0.0	0.61	0.57	0.62	0.82	1.83	23170	3110	12	0	10	0	0	logfile
✔	7QUD	14148	2024-02-13	2022-01-17	3.47	3.26	—	3.3	0.004	0.62	0.0	0.04	16.74	0.01	2.033	11.70	0.00	3.5	96.5	0.0	-0.13	0.67	0.77	2.12	3.2	0.003	0.59	0.0	0.04	18.27	0.01	1.995	12.31	2.79	2.9	97.1	0.0	-0.01	0.43	0.67	0.78	1.61	6696	844	4	0	3	0	0	logfile
✔	7TKH	25969	2024-02-18	2022-01-17	4.4	7.29	4.45	4.2	0.019	2.19	0.0	0.00	6.81	0.01	2.385	0.08	0.00	3.9	94.7	1.4	-0.35	0.59	0.62	—	4.2	0.018	1.32	0.0	0.00	7.42	0.01	1.974	32.32	0.00	15.1	84.5	0.3	-2.28	1.70	0.83	0.84	—	20228	5056	27	0	0	0	0	logfile
✔	7TKQ	25978	2024-02-18	2022-01-17	4.5	7.57	4.53	4.3	0.019	2.21	0.0	0.00	6.72	0.01	2.371	0.08	0.00	4.0	94.5	1.5	-0.48	0.59	0.61	—	4.3	0.009	1.21	0.0	0.00	7.52	0.01	1.933	34.86	0.00	13.6	85.9	0.5	-2.21	0.83	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7WN4	32621	2024-02-17	2022-01-17	3.4	3.53	—	3.4	0.007	0.96	0.0	0.05	14.19	0.01	2.137	11.57	0.15	13.5	86.3	0.2	-3.02	0.83	0.85	2.65	3.4	0.005	0.72	0.0	0.05	15.65	0.01	2.144	9.15	2.01	10.7	89.3	0.0	-2.24	1.04	0.83	0.86	2.54	18224	2372	8	0	14	0	0	logfile
✔	7TJU	25932	2024-02-18	2022-01-17	3.3	3.57	3.40	3.5	0.002	0.59	0.0	0.05	12.53	0.00	2.070	2.00	0.00	1.4	98.6	0.0	0.36	0.77	0.84	3.19	3.5	0.004	0.57	0.0	0.04	14.71	0.00	1.960	5.86	1.74	1.9	98.1	0.0	0.70	0.51	0.79	0.87	2.67	22687	3102	11	0	7	0	0	logfile
✔	7TJX	25939	2024-02-18	2022-01-17	4.0	3.84	4.09	3.9	0.003	0.62	0.0	0.05	12.05	0.00	1.858	2.49	0.05	1.8	98.2	0.0	0.09	0.60	0.79	—	3.9	0.003	0.66	0.0	0.04	15.74	0.00	1.899	10.37	3.59	2.6	97.4	0.0	0.37	1.47	0.62	0.80	—	21663	3072	12	0	11	0	0	logfile
✔	7TJT	25931	2024-02-18	2022-01-17	3.2	3.46	3.29	3.4	0.003	0.63	0.0	0.05	13.04	0.00	1.991	3.26	0.00	1.2	98.8	0.0	0.60	0.75	0.85	3.19	3.4	0.003	0.53	0.0	0.04	14.91	0.00	1.970	5.76	1.10	1.9	98.1	0.0	1.37	2.65	0.78	0.88	2.50	23129	3099	11	0	7	0	0	logfile
✔	7WN0	32618	2024-02-13	2022-01-17	3.64	3.82	—	3.7	0.003	0.57	0.0	0.04	16.82	0.01	2.273	9.34	0.47	3.3	96.7	0.0	1.10	0.58	0.82	1.51	3.7	0.004	0.62	0.0	0.04	16.93	0.00	2.240	11.51	4.20	3.9	96.1	0.0	1.32	1.90	0.68	0.86	1.36	3879	494	2	0	0	0	0	logfile
✔	7WN1	32619	2024-02-13	2022-01-17	3.11	3.41	—	3.3	0.007	0.65	0.0	0.04	13.83	0.00	2.246	7.77	0.00	3.7	96.3	0.0	1.00	0.64	0.87	3.64	3.3	0.003	0.55	0.0	0.04	15.99	0.00	2.143	8.41	3.02	3.7	96.3	0.0	1.84	0.89	0.65	0.89	3.19	3901	493	3	0	1	0	0	logfile

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