Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QTQ	14145	2024-02-13	2022-01-15	3.3	3.53	—	3.4	0.008	0.84	4.0	0.06	15.29	0.01	2.045	9.61	0.20	10.6	89.4	0.0	-2.27	0.72	0.82	2.74	3.5	0.003	0.56	2.0	0.04	15.69	0.01	1.939	8.81	0.70	7.4	92.6	0.0	-1.02	0.39	0.71	0.84	2.30	54954	3577	8	0	24	0	26821	logfile
✔	7TJ8	25919	2024-02-14	2022-01-14	3.2	3.59	—	3.5	0.015	1.03	2.0	0.06	17.59	0.01	2.042	6.51	0.80	6.0	93.4	0.7	-2.85	0.58	0.84	3.59	3.5	0.003	0.65	0.0	0.04	16.79	0.00	2.216	4.09	1.78	4.6	95.3	0.1	0.78	1.33	0.58	0.85	2.31	10551	1242	4	0	18	0	0	logfile
✔	7WM1	32597	2024-02-16	2022-01-14	2.8	2.99	—	3.1	0.012	1.25	34.0	0.08	20.14	0.01	2.080	15.92	15.89	6.6	93.4	0.0	-4.36	0.65	0.80	2.43	3.1	0.003	0.61	0.0	0.04	18.54	0.00	2.204	7.75	3.55	4.0	95.9	0.1	-0.27	3.93	0.59	0.80	2.45	15197	1844	8	0	7	0	0	logfile
✔	7WM4	32599	2024-02-19	2022-01-14	3.2	4.44	—	3.2	0.003	0.63	0.0	0.04	19.01	0.00	2.140	9.96	0.08	4.9	95.1	0.1	-1.73	0.86	0.70	0.72	3.2	0.005	0.78	0.0	0.04	17.61	0.00	2.088	26.78	2.29	10.9	89.0	0.2	-2.55	1.36	0.87	0.77	0.55	25848	2658	38	162	82	0	0	logfile
✔	7WM2	32598	2024-02-16	2022-01-14	2.69	2.86	—	3.0	0.012	1.03	12.0	0.07	18.17	0.01	2.110	18.30	12.04	5.9	94.0	0.2	-4.24	0.49	0.72	2.14	3.0	0.003	0.67	0.0	0.04	17.78	0.00	2.188	9.25	4.71	2.7	97.3	0.0	0.03	1.26	0.60	0.83	2.48	15485	1878	8	0	7	0	0	logfile
✔	7WLZ	32595	2024-02-19	2022-01-14	2.98	3.54	—	3.4	0.006	0.90	0.0	0.06	13.19	0.01	2.212	9.90	0.15	4.9	95.1	0.0	-2.29	0.80	0.81	2.68	3.4	0.003	0.67	0.0	0.04	14.56	0.00	2.145	8.73	1.97	3.7	96.3	0.0	-0.78	0.52	0.81	0.84	2.12	25061	3171	8	0	27	0	0	logfile
✔	7WLY	32594	2024-02-20	2022-01-14	3.4	3.69	—	3.5	0.007	0.86	0.0	0.06	13.27	0.01	2.207	9.99	0.97	7.1	92.9	0.0	-2.55	0.80	0.79	1.99	3.5	0.003	0.63	0.0	0.04	14.11	0.00	2.112	10.04	2.14	4.4	95.6	0.0	-0.95	0.56	0.81	0.82	1.86	28550	3627	12	0	31	0	0	logfile
✔	7QTJ	14142	2024-02-14	2022-01-14	4.01	4.23	—	4.1	0.004	0.73	4.0	0.05	15.20	0.01	2.144	8.44	1.27	5.2	94.5	0.3	0.17	0.63	0.74	—	4.1	0.006	0.82	0.0	0.05	13.31	0.00	2.149	16.88	0.09	8.0	91.7	0.2	-1.35	0.51	0.64	0.75	—	9942	1280	8	0	5	0	0	logfile
✔	7WM0	32596	2024-02-13	2022-01-14	3.35	3.62	—	3.7	0.009	1.22	0.0	0.08	12.60	0.01	2.405	9.08	0.28	5.4	94.6	0.0	-2.87	0.69	0.56	0.97	3.6	0.004	0.84	0.0	0.05	16.37	0.00	2.037	16.19	6.89	5.9	94.1	0.0	-1.99	1.76	0.76	0.68	0.46	3376	432	4	0	1	0	0	logfile
✔	7QTi	14141	2024-02-23	2022-01-14	3.04	3.98	—	3.7	0.004	0.71	1.0	0.05	15.36	0.01	2.151	8.80	0.91	5.5	94.2	0.3	-0.44	0.72	0.68	1.47	3.7	0.005	0.68	0.0	0.05	14.74	0.00	2.098	10.12	1.65	6.9	93.0	0.1	-0.60	0.50	0.75	0.76	1.56	40094	5061	31	0	64	0	0	logfile
✔	7QTK	14143	2024-02-13	2022-01-14	3.84	4.13	—	4.0	0.004	0.73	1.0	0.05	13.16	0.00	2.182	9.44	0.54	4.9	95.0	0.2	-0.03	0.61	0.79	1.74	4.0	0.003	0.66	0.0	0.05	14.43	0.00	2.180	9.85	1.80	5.0	94.8	0.2	-0.11	0.53	0.62	0.79	1.78	5009	643	4	0	2	0	0	logfile
✘	7TJ9	25920	2024-02-15	2022-01-14	2.9	3.19	—	3.1	0.017	1.02	0.0	0.06	18.48	0.01	2.167	6.06	0.09	5.0	95.0	0.0	0.12	0.56	0.82	2.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10975	1273	5	0	24	0	0	logfile
✔	7TJ2	25915	2024-02-17	2022-01-14	3.2	3.32	—	3.4	0.002	0.37	0.0	0.04	11.30	0.00	2.196	3.77	1.64	2.4	97.6	0.0	0.18	0.69	0.76	3.52	3.3	0.004	0.54	0.0	0.04	15.12	0.00	2.192	6.55	3.34	3.3	96.7	0.0	-0.16	2.83	0.71	0.82	3.40	17083	2007	8	62	0	0	0	logfile
✔	7WLR	32591	2024-02-15	2022-01-13	3.54	3.36	—	3.5	0.006	0.88	0.0	0.05	29.27	0.01	2.232	3.15	0.00	1.8	98.2	0.0	1.65	0.69	0.75	2.27	3.5	0.003	0.53	0.0	0.03	28.09	0.00	2.171	7.98	1.25	1.4	98.6	0.0	3.30	1.22	0.78	0.82	1.95	11922	754	10	290	0	0	0	logfile
✔	7WLK	32586	2024-02-14	2022-01-13	3.6	3.50	—	3.6	0.010	0.99	0.0	0.06	15.42	0.00	1.853	14.07	0.10	6.7	93.3	0.0	0.27	0.72	0.79	1.77	3.6	0.004	0.71	0.0	0.04	15.88	0.00	2.182	11.20	2.39	4.8	95.2	0.0	1.33	1.18	0.72	0.78	1.02	9461	1135	1	0	17	0	0	logfile
✔	7TiL	25913	2024-02-13	2022-01-13	3.7	4.37	3.77	4.0	0.002	0.54	0.0	0.04	13.78	0.00	2.253	8.12	0.00	3.8	96.2	0.0	0.14	0.87	0.79	1.33	4.0	0.003	0.70	0.0	0.04	15.91	0.00	2.213	12.52	1.15	4.5	95.5	0.0	0.52	1.75	0.88	0.84	1.85	5815	739	2	0	0	0	0	logfile
✔	7WLL	32587	2024-02-14	2022-01-13	3.6	3.89	—	3.8	0.012	1.19	2.0	0.08	16.94	0.00	2.026	13.97	0.50	7.3	92.6	0.1	-0.42	0.60	0.81	1.99	3.8	0.004	0.85	0.0	0.06	16.93	0.00	2.181	12.63	1.49	6.5	93.5	0.0	0.84	1.17	0.59	0.81	1.52	9540	1135	1	0	21	0	0	logfile
✔	7WLC	32581	2024-02-13	2022-01-13	4.0	4.24	—	4.1	0.003	0.70	0.0	0.04	13.71	0.00	2.198	15.62	0.00	6.1	93.9	0.0	-1.35	0.71	0.77	—	4.1	0.004	0.76	0.0	0.05	16.01	0.00	2.156	17.48	3.34	9.4	90.6	0.0	-1.65	0.49	0.72	0.78	—	3307	430	3	0	0	0	0	logfile
✔	7WLJ	32585	2024-02-14	2022-01-13	3.9	4.18	—	4.1	0.009	1.01	0.0	0.14	16.92	0.00	1.912	18.90	0.10	6.7	93.3	0.0	0.03	0.59	0.80	1.62	4.1	0.005	0.89	0.0	0.05	15.86	0.00	2.145	17.91	1.79	6.9	93.1	0.0	-0.07	0.63	0.61	0.81	1.09	9450	1135	1	0	15	0	0	logfile
✔	7WLi	32584	2024-02-14	2022-01-13	3.3	3.59	—	3.6	0.012	1.01	1.0	0.06	15.40	0.01	1.888	15.00	0.20	7.3	92.5	0.2	-0.17	0.59	0.78	2.16	3.6	0.004	0.73	0.0	0.04	15.81	0.00	2.136	14.79	0.99	6.7	93.3	0.0	0.56	0.48	0.59	0.79	1.76	9493	1135	1	0	21	0	0	logfile

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