Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T8T	25745	2024-02-17	2021-12-17	3.68	4.13	—	3.9	0.002	0.50	0.0	0.04	13.83	0.00	2.195	4.02	0.00	5.7	94.2	0.1	-0.81	0.80	0.74	1.85	3.9	0.002	0.51	0.0	0.04	14.94	0.00	2.117	6.20	0.93	6.8	93.0	0.2	-0.97	0.46	0.81	0.75	1.83	17434	1086	1	0	1	0	8626	logfile
✔	7QJX	14025	2024-02-16	2021-12-17	2.99	3.05	3.00	2.8	0.014	2.56	5.0	0.24	13.83	0.02	2.532	0.29	0.00	1.7	98.2	0.1	-2.52	0.35	0.70	3.48	2.8	0.005	1.22	0.0	0.31	16.18	0.01	2.137	3.97	2.05	7.0	93.0	0.0	-3.76	2.46	0.36	0.78	3.63	13860	900	12	0	0	0	7056	logfile
✔	7QKJ	14044	2024-02-13	2021-12-17	3.26	3.08	3.11	3.2	0.012	2.04	12.0	0.16	11.59	0.01	2.510	0.21	0.00	9.9	90.1	0.0	-2.24	0.35	0.71	3.92	3.2	0.005	0.80	0.0	0.05	15.73	0.00	2.083	10.18	2.90	7.1	92.9	0.0	-2.87	1.06	0.36	0.85	2.89	6888	900	12	0	0	0	0	logfile
✔	7QJW	14024	2024-02-13	2021-12-17	2.81	2.81	1.88	2.9	0.012	2.09	0.0	0.10	11.96	0.01	2.556	0.00	0.00	2.3	96.3	1.4	-1.19	0.34	0.72	5.41	2.8	0.002	0.58	0.0	0.05	15.06	0.00	2.295	3.99	1.52	3.4	96.6	0.0	-1.63	1.46	0.38	0.78	5.04	7032	450	6	0	0	0	3588	logfile
✔	7QKK	14045	2024-02-13	2021-12-17	2.8	2.31	2.82	3.2	0.012	2.17	4.0	0.12	13.17	0.02	2.483	1.41	0.00	9.5	90.5	0.0	-3.44	0.37	0.77	4.39	3.2	0.003	0.66	0.0	0.05	16.47	0.01	2.140	11.88	2.02	9.5	90.5	0.0	-3.55	1.61	0.35	0.79	2.90	3537	228	3	0	0	0	1803	logfile
✔	7QK5	14038	2024-02-14	2021-12-17	1.92	1.67	1.83	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.10	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.004	0.64	0.0	0.05	18.07	0.01	2.251	3.63	2.22	3.7	96.3	0.0	-1.68	1.63	0.36	0.83	7.23	10485	666	18	0	36	0	5337	logfile
✔	7QKM	14047	2024-02-13	2021-12-17	2.66	2.80	2.61	2.7	0.010	1.89	1.0	0.11	12.52	0.01	2.548	0.00	0.00	7.2	92.8	0.0	-1.95	0.42	0.86	6.21	2.7	0.002	0.55	0.0	0.05	16.11	0.00	1.968	5.92	0.34	4.7	95.3	0.0	-1.51	1.32	0.39	0.89	6.05	5070	330	6	0	0	0	2634	logfile
✔	7QJZ	14027	2024-02-13	2021-12-17	3.4	3.37	3.42	3.5	0.011	2.09	0.0	0.10	13.72	0.01	2.490	0.44	0.00	5.3	94.4	0.2	-3.28	0.40	0.74	4.32	3.4	0.004	0.77	0.0	0.05	14.75	0.00	2.226	9.30	3.33	7.6	92.4	0.0	-3.19	2.58	0.37	0.77	4.32	3378	444	6	0	0	0	0	logfile
✔	7WBB	32396	2024-02-22	2021-12-16	3.6	3.64	—	3.5	0.002	0.55	2.0	0.04	14.72	0.00	2.206	9.66	0.11	5.0	94.6	0.3	0.91	0.80	0.74	0.62	3.5	0.003	0.60	0.0	0.04	15.64	0.00	2.152	11.63	2.50	6.0	93.6	0.4	0.28	1.91	0.83	0.81	1.08	33634	4329	13	0	33	0	0	logfile
✘	7QiX	14002	2024-02-20	2021-12-16	2.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	83517	2911	42	1110	81	570	35777	logfile
✔	7WBH	32398	2024-02-21	2021-12-16	3.7	3.43	—	3.3	0.006	1.13	1.0	0.07	15.48	0.01	2.310	3.14	0.06	5.3	94.6	0.0	-2.71	0.71	0.77	2.28	3.4	0.005	0.71	0.0	0.05	15.05	0.00	2.109	9.62	1.72	5.4	94.5	0.0	-1.04	1.22	0.72	0.78	2.31	29187	3681	26	0	55	0	0	logfile
✔	7T8B	25743	2024-02-22	2021-12-16	3.8	2.77	3.90	2.3	0.002	0.47	0.0	0.04	8.77	0.00	2.205	7.91	1.40	4.3	95.6	0.2	-0.32	0.73	0.72	2.28	2.3	0.003	0.68	0.0	0.04	15.19	0.00	2.099	15.52	3.21	5.2	94.8	0.0	-0.04	1.68	0.73	0.73	1.63	33025	4131	8	0	0	0	0	logfile
✔	7QiY	14003	2024-02-24	2021-12-16	2.58	2.55	2.47	2.5	0.008	0.74	0.0	0.04	20.30	0.02	1.714	1.92	0.00	1.5	98.5	0.0	0.57	0.80	0.88	4.88	2.5	0.003	0.76	0.0	0.04	20.98	0.01	1.696	4.13	1.07	1.6	98.4	0.0	1.44	0.59	0.80	0.90	4.39	43805	1730	31	491	41	225	19242	logfile
✔	7WBJ	32401	2024-02-14	2021-12-16	3.42	3.69	—	3.7	0.004	0.61	0.0	0.05	14.59	0.00	1.264	12.09	0.21	4.9	95.1	0.0	-1.06	0.65	0.74	2.02	3.7	0.003	0.53	0.0	0.04	16.28	0.00	2.168	10.96	2.57	4.3	95.7	0.0	-0.35	0.34	0.64	0.76	1.50	8989	1146	6	0	0	0	0	logfile
✔	7T8C	25744	2024-02-20	2021-12-16	4.5	3.21	4.51	4.6	0.001	0.42	0.0	0.04	7.59	0.00	2.347	5.08	0.41	3.6	96.4	0.0	0.76	0.63	0.54	—	4.1	0.003	0.66	0.0	0.04	10.99	0.00	2.224	13.57	0.00	5.2	94.8	0.0	0.08	1.20	0.67	0.64	—	28952	3626	7	0	0	0	0	logfile
✔	7WAY	32389	2024-02-15	2021-12-15	2.9	3.11	—	2.9	0.004	0.54	0.0	0.04	19.59	0.00	2.172	5.59	0.00	2.8	97.2	0.0	1.31	0.87	0.85	2.73	2.9	0.003	0.54	0.0	0.03	20.06	0.00	2.234	5.35	0.48	2.1	97.9	0.0	1.88	0.32	0.88	0.88	2.32	11453	960	4	175	0	0	0	logfile
✔	7WAZ	32390	2024-02-15	2021-12-15	3.4	3.85	—	3.4	0.002	0.59	0.0	0.04	21.36	0.00	2.160	11.49	5.53	4.0	95.8	0.2	0.74	0.67	0.58	0.88	3.4	0.004	0.70	0.0	0.04	22.26	0.00	2.102	20.51	3.37	7.5	92.3	0.2	-0.22	1.39	0.70	0.64	0.72	11034	952	4	157	0	0	0	logfile
✔	7WB5	32395	2024-02-13	2021-12-15	3.7	3.89	—	3.9	0.011	1.41	0.0	0.09	21.95	0.02	2.188	18.30	14.00	18.2	79.6	2.2	-4.90	0.61	0.78	2.04	3.9	0.004	0.82	0.0	0.05	16.90	0.01	2.203	18.93	6.86	9.2	90.8	0.0	-3.54	1.63	0.62	0.78	1.79	3256	408	4	0	3	0	0	logfile
✔	7WB1	32392	2024-02-15	2021-12-15	3.7	3.09	—	3.0	0.003	0.59	0.0	0.04	22.13	0.00	2.046	11.12	0.00	4.7	95.2	0.1	0.55	0.83	0.75	0.94	3.0	0.003	0.59	0.0	0.04	22.69	0.00	2.078	13.08	1.67	4.7	95.3	0.0	0.68	1.01	0.83	0.76	1.39	11524	960	4	178	0	0	0	logfile
✔	7WB0	32391	2024-02-14	2021-12-15	3.2	3.52	—	3.3	0.003	0.58	0.0	0.03	21.37	0.00	2.136	7.20	0.00	3.3	96.6	0.1	0.54	0.70	0.73	1.78	3.3	0.006	0.67	0.0	0.04	21.89	0.00	2.129	10.54	1.57	6.2	93.6	0.1	0.13	1.04	0.72	0.78	1.32	10096	797	4	175	0	0	0	logfile

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