Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7T6X	25730	2024-02-14	2021-12-14	3.83	4.14	3.83	4.0	0.022	1.97	0.0	0.13	15.96	0.02	1.505	3.89	0.00	3.8	96.1	0.1	-0.16	0.77	0.82	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9217	1140	19	0	37	0	0	logfile
✔	7WAD	32382	2024-02-18	2021-12-14	2.96	3.51	2.93	3.3	0.003	0.58	0.0	0.05	13.99	0.00	1.992	6.02	0.00	3.3	96.7	0.0	-0.02	0.79	0.88	3.23	3.3	0.005	0.55	0.0	0.05	15.65	0.00	1.890	6.22	1.11	3.5	96.5	0.0	0.36	0.36	0.79	0.89	3.40	22268	2892	8	0	12	0	0	logfile
✔	7T6U	25728	2024-02-14	2021-12-14	2.9	2.23	—	1.9	0.006	1.00	4.0	0.06	12.93	0.01	2.315	3.49	0.31	2.0	98.0	0.0	-3.84	0.76	0.78	4.04	2.0	0.003	0.63	0.0	0.04	15.97	0.00	2.140	8.42	2.34	2.4	97.6	0.0	0.37	1.20	0.78	0.81	3.34	9033	1152	6	0	2	0	0	logfile
✔	7QiA	13985	2024-02-13	2021-12-14	3.5	3.73	3.29	3.6	0.003	0.60	0.0	0.04	12.91	0.00	2.259	11.63	0.00	7.9	92.1	0.0	-1.03	0.65	0.80	1.56	3.6	0.003	0.61	0.0	0.04	14.66	0.00	2.202	12.04	2.19	7.4	92.6	0.0	-0.25	1.33	0.62	0.80	1.45	4843	639	4	0	0	3	0	logfile
✔	7T6J	25716	2024-02-17	2021-12-14	3.2	3.40	—	3.4	0.005	1.09	2.0	0.06	14.92	0.01	2.340	3.85	0.05	3.2	96.7	0.2	-3.33	0.70	0.87	2.58	3.4	0.002	0.57	0.0	0.04	16.52	0.00	2.183	7.47	1.29	2.6	97.4	0.0	1.52	0.93	0.72	0.90	2.08	19412	2424	4	0	0	0	0	logfile
✔	7WAE	32383	2024-02-19	2021-12-14	2.64	3.01	2.60	2.9	0.003	0.56	0.0	0.05	13.86	0.00	1.339	7.98	0.27	3.2	96.6	0.2	0.26	0.79	0.87	2.86	2.9	0.002	0.52	0.0	0.04	15.59	0.00	1.942	7.20	1.49	3.5	96.5	0.0	0.27	0.39	0.79	0.89	2.89	24850	3227	16	0	19	0	0	logfile
✔	7T75	25734	2024-02-17	2021-12-14	2.7	2.93	2.74	3.0	0.022	1.83	12.0	0.14	11.79	0.01	2.271	1.14	0.90	2.5	96.7	0.8	0.58	0.76	0.83	4.58	2.9	0.004	0.65	0.0	0.05	14.00	0.00	2.197	6.47	2.09	3.8	96.1	0.1	0.34	0.63	0.73	0.83	4.40	19227	2316	36	0	87	0	0	logfile
✘	7T6L	25718	2024-02-17	2021-12-14	3.7	4.01	—	3.9	0.007	1.18	0.0	0.07	15.11	0.01	2.245	5.37	0.00	4.8	95.2	0.0	-4.03	0.68	0.82	1.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19412	2424	4	0	0	0	0	logfile
✔	7QiC	13987	2024-02-13	2021-12-14	4.1	4.27	4.00	4.2	0.003	0.65	0.0	0.04	12.83	0.00	2.221	13.06	0.20	7.7	92.3	0.0	-0.78	0.64	0.79	—	4.2	0.003	0.67	0.0	0.04	12.73	0.01	2.178	13.67	0.00	8.2	91.8	0.0	-0.19	1.37	0.65	0.79	—	4841	639	4	0	1	0	0	logfile
✔	7T6P	25723	2024-02-17	2021-12-14	2.8	3.33	—	3.3	0.005	1.13	0.0	0.06	14.54	0.01	2.310	3.72	0.00	4.0	96.0	0.0	-3.37	0.59	0.76	2.86	3.3	0.003	0.64	0.0	0.04	16.95	0.00	2.163	10.65	2.10	4.7	95.3	0.0	0.69	0.48	0.54	0.74	2.47	19412	2424	4	0	0	0	0	logfile
✔	7T6V	25729	2024-02-14	2021-12-14	3.1	2.67	—	3.2	0.011	1.26	3.0	0.09	12.33	0.01	2.047	7.55	0.10	2.1	97.9	0.0	1.19	0.76	0.81	2.45	3.2	0.003	0.59	0.0	0.04	15.20	0.00	2.184	7.94	2.05	1.5	98.5	0.0	1.09	0.49	0.77	0.84	2.15	8949	1142	7	0	1	0	0	logfile
✔	7T6S	25726	2024-02-14	2021-12-14	3.0	2.75	—	3.0	0.013	1.29	3.0	0.10	13.45	0.01	2.223	9.06	0.10	2.2	97.8	0.0	-0.64	0.60	0.81	3.66	3.0	0.003	0.57	0.0	0.04	15.64	0.00	2.156	9.18	2.47	2.1	97.9	0.0	0.02	1.59	0.61	0.83	3.13	8906	1136	5	0	1	0	0	logfile
✔	7T6R	25725	2024-02-17	2021-12-14	3.0	3.20	—	3.2	0.005	1.07	0.0	0.06	14.25	0.01	2.335	3.47	0.00	4.7	95.3	0.0	-3.26	0.68	0.84	3.26	3.2	0.003	0.59	0.0	0.04	16.52	0.00	2.194	8.81	0.91	4.0	96.0	0.0	0.93	0.43	0.70	0.88	2.24	19412	2424	4	0	0	0	0	logfile
✔	7T6K	25717	2024-02-17	2021-12-14	3.0	3.29	—	3.3	0.005	1.05	1.0	0.06	14.25	0.01	2.313	3.34	0.05	3.3	96.7	0.0	-3.51	0.68	0.82	3.50	3.3	0.003	0.60	0.0	0.04	16.77	0.00	2.123	8.86	2.91	2.4	97.6	0.0	0.73	1.15	0.69	0.85	2.89	19412	2424	4	0	0	0	0	logfile
✔	7T77	25736	2024-02-16	2021-12-14	4.75	4.98	4.61	4.8	0.022	1.83	4.0	0.15	13.67	0.02	2.295	1.06	0.87	2.7	97.0	0.3	0.38	0.80	0.77	—	4.8	0.004	0.70	0.0	0.04	11.98	0.01	2.127	13.26	0.00	5.2	94.8	0.0	-1.07	1.54	0.82	0.81	—	16832	1956	42	0	105	0	0	logfile
✔	7T76	25735	2024-02-16	2021-12-14	4.43	4.68	4.39	4.5	0.022	1.97	2.0	0.14	12.89	0.02	0.530	1.29	0.77	3.4	96.4	0.3	0.31	0.81	0.80	—	4.5	0.003	0.68	0.0	0.05	11.71	0.00	1.029	10.98	0.00	4.6	95.4	0.1	-0.42	1.87	0.81	0.81	—	16587	1934	42	0	104	0	0	logfile
✔	7T73	25732	2024-02-16	2021-12-14	4.0	4.27	3.95	4.3	0.021	1.92	14.0	0.14	13.61	0.02	1.521	2.44	1.56	3.5	95.7	0.8	-0.60	0.74	0.78	—	4.2	0.004	0.74	0.0	0.05	14.07	0.00	2.063	11.55	3.11	4.2	95.7	0.1	-0.93	0.88	0.76	0.80	—	16010	1907	28	0	78	0	0	logfile
✔	7T6N	25720	2024-02-17	2021-12-14	2.9	3.20	—	3.2	0.007	1.08	4.0	0.06	13.71	0.01	2.335	3.95	0.19	3.2	96.8	0.0	-3.03	0.63	0.78	3.52	3.2	0.003	0.59	0.0	0.04	16.51	0.00	2.286	9.29	1.72	2.7	97.3	0.0	1.47	0.45	0.72	0.85	2.90	19412	2424	4	0	0	0	0	logfile
✔	7T74	25733	2024-02-18	2021-12-14	3.35	3.65	3.39	3.5	0.022	1.77	3.0	0.16	12.71	0.01	2.337	0.77	0.64	2.5	97.0	0.6	0.71	0.79	0.86	3.50	3.5	0.003	0.66	0.0	0.04	12.87	0.00	2.133	7.79	1.68	4.2	95.7	0.1	-0.19	1.23	0.79	0.86	2.74	21199	2552	41	0	98	0	0	logfile
✔	7T6o	25721	2024-02-17	2021-12-14	2.6	2.80	—	2.9	0.004	0.79	0.0	0.05	14.06	0.01	2.302	2.54	0.00	1.3	98.7	0.0	-1.56	0.67	0.84	3.82	2.8	0.003	0.52	0.0	0.04	16.25	0.00	2.175	6.29	1.43	1.1	98.9	0.0	1.65	0.89	0.69	0.88	3.35	19412	2424	4	0	0	0	0	logfile

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