Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T6J	25716	2024-02-17	2021-12-14	3.2	3.40	—	3.4	0.005	1.09	2.0	0.06	14.92	0.01	2.340	3.85	0.05	3.2	96.7	0.2	-3.33	0.70	0.87	2.58	3.4	0.002	0.57	0.0	0.04	16.52	0.00	2.183	7.47	1.29	2.6	97.4	0.0	1.52	0.93	0.72	0.90	2.08	19412	2424	4	0	0	0	0	logfile
✔	7WAE	32383	2024-02-19	2021-12-14	2.64	3.01	2.60	2.9	0.003	0.56	0.0	0.05	13.86	0.00	1.339	7.98	0.27	3.2	96.6	0.2	0.26	0.79	0.87	2.86	2.9	0.002	0.52	0.0	0.04	15.59	0.00	1.942	7.20	1.49	3.5	96.5	0.0	0.27	0.39	0.79	0.89	2.89	24850	3227	16	0	19	0	0	logfile
✔	7T6T	25727	2024-02-13	2021-12-14	3.2	2.74	—	3.3	0.011	1.55	0.0	0.10	13.22	0.01	2.223	13.63	1.16	2.0	98.0	0.0	0.19	0.68	0.80	2.07	3.3	0.004	0.67	0.0	0.04	16.77	0.00	2.004	14.12	4.52	1.6	98.4	0.0	-0.05	0.67	0.66	0.81	2.60	7164	908	5	0	2	0	0	logfile
✔	7T6S	25726	2024-02-14	2021-12-14	3.0	2.75	—	3.0	0.013	1.29	3.0	0.10	13.45	0.01	2.223	9.06	0.10	2.2	97.8	0.0	-0.64	0.60	0.81	3.66	3.0	0.003	0.57	0.0	0.04	15.64	0.00	2.156	9.18	2.47	2.1	97.9	0.0	0.02	1.59	0.61	0.83	3.13	8906	1136	5	0	1	0	0	logfile
✔	7T6V	25729	2024-02-14	2021-12-14	3.1	2.67	—	3.2	0.011	1.26	3.0	0.09	12.33	0.01	2.047	7.55	0.10	2.1	97.9	0.0	1.19	0.76	0.81	2.45	3.2	0.003	0.59	0.0	0.04	15.20	0.00	2.184	7.94	2.05	1.5	98.5	0.0	1.09	0.49	0.77	0.84	2.15	8949	1142	7	0	1	0	0	logfile
✔	7T5P	25706	2024-02-15	2021-12-13	3.4	3.23	3.35	2.2	0.003	0.59	0.0	0.04	17.85	0.00	1.971	15.30	0.39	4.7	95.3	0.0	1.09	0.76	0.73	0.61	2.2	0.003	0.61	0.0	0.04	18.04	0.00	1.948	15.97	2.58	4.7	95.3	0.0	1.62	0.41	0.77	0.74	0.45	13597	822	2	0	0	0	6866	logfile
✔	7T65	25710	2024-02-19	2021-12-13	4.05	4.38	4.14	3.9	0.006	0.95	4.0	0.05	15.43	0.01	2.110	2.79	0.00	9.2	90.6	0.2	-2.33	0.81	0.81	—	3.9	0.004	0.66	0.0	0.04	15.17	0.00	2.065	9.45	0.00	8.7	91.0	0.2	-0.77	0.42	0.81	0.81	—	135328	17436	12	0	12	0	0	logfile
✔	7T67	25711	2024-02-19	2021-12-13	3.0	4.53	3.13	3.0	0.004	0.76	0.0	0.05	13.33	0.01	2.074	5.55	0.00	2.8	97.2	0.0	-0.16	0.85	0.80	2.60	3.0	0.003	0.59	0.0	0.04	14.20	0.00	2.144	8.03	0.41	2.9	97.1	0.0	0.45	0.49	0.89	0.86	2.37	24753	3075	9	0	51	0	0	logfile
✘	7QHo	13977	2024-02-21	2021-12-13	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	93446	5870	54	0	78	10	44952	logfile
✘	7QHM	13976	2024-02-22	2021-12-13	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94633	5886	67	0	88	416	45103	logfile
✔	7T64	25709	2024-02-19	2021-12-13	4.0	4.36	4.08	3.9	0.002	0.64	0.0	0.04	14.83	0.00	2.175	5.90	0.00	6.1	93.5	0.4	-0.38	0.76	0.70	—	4.0	0.003	0.63	0.0	0.04	16.24	0.00	2.131	10.40	1.81	8.2	91.6	0.2	-0.09	0.51	0.77	0.73	—	134196	17416	12	0	4	0	0	logfile
✔	7T5Q	25707	2024-02-18	2021-12-13	3.4	2.43	3.36	2.1	0.005	0.86	0.0	0.05	13.79	0.01	1.984	2.02	0.08	5.4	94.6	0.0	-1.49	0.75	0.76	2.01	2.1	0.003	0.63	0.0	0.04	16.08	0.00	1.981	8.45	2.79	5.0	94.9	0.0	-0.67	0.95	0.77	0.77	1.60	21671	2703	13	0	6	0	0	logfile
✔	7T5o	25699	2024-02-18	2021-12-12	3.39	3.68	—	3.5	0.007	1.38	6.0	0.08	13.25	0.01	2.295	3.59	0.00	5.1	94.9	0.0	-2.90	0.56	0.47	0.35	3.6	0.004	0.78	0.0	0.05	15.76	0.00	2.066	15.90	2.49	7.8	92.2	0.0	-1.67	1.27	0.68	0.63	0.52	21263	2758	5	0	0	0	0	logfile
✔	7QHH	13972	2024-02-15	2021-12-12	3.6	3.51	3.48	3.6	0.014	1.83	0.0	0.09	13.09	0.01	2.546	3.81	0.19	0.3	99.6	0.1	-0.83	0.66	0.74	3.73	3.5	0.010	0.77	0.0	0.05	14.13	0.00	2.172	11.85	3.02	2.0	98.0	0.0	0.69	1.30	0.65	0.73	2.85	13626	1982	12	0	14	0	0	logfile
✔	7T56	25696	2024-02-15	2021-12-11	3.7	4.23	3.77	4.1	0.004	0.68	0.0	0.05	13.82	0.00	1.719	9.32	0.72	3.3	96.6	0.1	0.18	0.72	0.76	1.54	4.1	0.003	0.70	0.0	0.04	16.65	0.00	1.914	11.29	3.37	3.6	96.4	0.0	0.93	0.86	0.73	0.81	1.25	11460	1464	6	0	4	0	0	logfile
✔	7T57	25697	2024-02-15	2021-12-11	3.7	4.28	3.83	4.1	0.003	0.73	0.0	0.04	14.11	0.00	1.826	9.53	0.72	2.7	97.1	0.1	0.90	0.72	0.74	0.99	4.1	0.004	0.93	1.0	0.04	16.04	0.00	1.989	11.55	2.57	2.5	97.5	0.0	1.05	0.86	0.73	0.79	1.12	11460	1464	6	0	4	0	0	logfile
✔	7QHA	13968	2024-02-13	2021-12-11	2.97	4.06	3.00	3.8	0.003	0.59	0.0	0.04	12.23	0.00	2.268	6.68	0.00	2.7	97.3	0.0	1.85	0.69	0.86	2.37	3.7	0.004	0.74	0.0	0.04	15.51	0.00	2.104	9.00	2.28	2.8	97.2	0.0	2.07	0.93	0.69	0.86	2.04	5282	684	4	0	2	0	0	logfile
✔	7WA1	32379	2024-02-13	2021-12-11	2.9	3.13	—	3.1	0.003	0.58	0.0	0.04	11.30	0.01	2.103	2.47	1.59	2.8	97.2	0.0	-3.55	0.68	0.82	3.80	3.1	0.003	0.54	0.0	0.04	15.13	0.00	2.150	6.45	1.88	2.7	97.3	0.0	0.56	1.45	0.66	0.83	3.67	6440	790	3	0	1	0	0	logfile
✔	7T55	25695	2024-02-15	2021-12-11	4.1	4.86	4.16	4.3	0.004	0.71	0.0	0.04	13.63	0.00	1.743	14.08	0.24	2.9	97.0	0.1	0.26	0.75	0.76	—	4.3	0.003	0.60	0.0	0.04	13.22	0.00	1.905	12.67	0.00	3.0	97.0	0.0	1.51	1.27	0.79	0.85	—	11460	1464	6	0	4	0	0	logfile
✔	7T54	25694	2024-02-14	2021-12-11	4.5	7.46	4.54	4.6	0.004	0.70	1.0	0.05	12.14	0.00	2.078	8.94	0.68	4.4	95.5	0.1	0.70	0.62	0.64	—	4.6	0.005	0.76	0.0	0.04	11.83	0.00	2.157	21.30	0.00	9.5	90.2	0.3	-0.60	1.62	0.70	0.81	—	8552	1416	4	0	2	0	0	logfile

• ← previous
• Page 286 of 633
• next →