Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T57	25697	2024-02-15	2021-12-11	3.7	4.28	3.83	4.1	0.003	0.73	0.0	0.04	14.11	0.00	1.826	9.53	0.72	2.7	97.1	0.1	0.90	0.72	0.74	0.99	4.1	0.004	0.93	1.0	0.04	16.04	0.00	1.989	11.55	2.57	2.5	97.5	0.0	1.05	0.86	0.73	0.79	1.12	11460	1464	6	0	4	0	0	logfile
✔	7T4o	25683	2024-02-23	2021-12-10	3.65	3.25	—	3.5	0.007	0.88	0.0	0.05	16.84	0.00	1.776	16.75	1.85	5.4	94.4	0.3	0.05	0.47	0.70	1.84	3.3	0.004	0.66	0.0	0.05	17.64	0.00	2.021	11.15	3.54	4.8	95.0	0.2	-0.22	1.34	0.62	0.81	2.35	19142	2310	18	0	26	0	0	logfile
✔	7W9V	32373	2024-02-17	2021-12-10	3.95	4.17	—	4.0	0.006	0.86	0.0	0.05	25.02	0.01	2.021	8.63	0.44	2.0	98.0	0.0	-0.79	0.79	0.65	0.99	4.0	0.003	0.50	0.0	0.03	25.72	0.00	1.966	38.47	1.87	3.0	97.0	0.0	2.40	1.36	0.88	0.84	1.01	18546	1302	11	290	0	0	2136	logfile
✔	7T4N	25681	2024-02-13	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.5	0.002	0.47	0.0	0.04	16.41	0.00	2.285	5.09	1.53	1.3	98.7	0.0	1.56	0.20	0.66	0.87	3.51	6476	803	2	0	0	0	0	logfile
✔	7T4R	25686	2024-02-20	2021-12-10	3.3	2.34	—	3.1	0.004	0.64	0.0	0.04	13.15	0.01	2.123	8.83	0.00	3.8	96.2	0.0	-0.69	0.76	0.72	2.72	3.1	0.005	0.70	0.0	0.04	15.21	0.01	2.074	10.71	2.28	4.5	95.5	0.0	0.15	1.16	0.78	0.76	2.33	28717	3595	25	0	14	0	0	logfile
✔	7T4M	25680	2024-02-23	2021-12-10	2.48	2.77	2.55	2.7	0.001	0.38	0.0	0.04	9.69	0.00	2.253	4.85	0.97	1.6	98.4	0.0	1.34	0.72	0.86	4.48	2.7	0.003	0.61	1.0	0.04	12.70	0.00	1.631	6.06	1.11	1.2	98.8	0.0	1.43	0.89	0.73	0.88	4.22	39054	4854	12	0	0	0	0	logfile
✔	7QGU	13959	2024-02-19	2021-12-10	4.75	7.20	—	5.6	0.010	1.50	1.0	0.04	24.12	0.02	1.064	11.45	0.26	6.6	91.0	2.3	-1.82	0.70	0.57	—	5.5	0.010	1.17	0.0	0.05	26.12	0.01	1.070	79.37	0.00	10.3	88.9	0.8	-1.60	2.88	0.82	0.84	—	135606	5791	54	4656	0	0	0	logfile
✔	7QH6	13965	2024-02-20	2021-12-10	3.08	5.04	—	2.4	0.006	0.78	0.0	0.04	19.92	0.01	1.954	6.72	4.29	6.9	93.1	0.0	-1.89	0.69	0.56	1.12	2.3	0.004	0.71	0.0	0.04	20.35	0.00	1.972	21.15	2.98	5.8	94.2	0.0	-0.39	0.70	0.88	0.84	1.02	83425	7113	47	1189	1	0	0	logfile
✔	7QH7	13967	2024-02-20	2021-12-10	2.89	4.42	—	2.2	0.007	0.72	0.0	0.04	19.37	0.00	1.147	6.45	3.11	7.6	92.3	0.1	-1.65	0.66	0.59	2.10	2.3	0.003	0.74	0.0	0.04	19.71	0.00	1.173	15.43	1.93	5.2	94.8	0.0	-0.34	0.70	0.89	0.85	1.63	85397	7017	59	1312	53	14	0	logfile
✔	7T4X	25691	2024-02-21	2021-12-10	2.8	3.07	2.83	3.1	0.006	0.93	0.0	0.05	13.01	0.01	2.392	0.82	1.52	1.4	98.6	0.0	-0.26	0.66	0.83	3.93	3.1	0.003	0.54	0.0	0.04	14.85	0.00	2.041	6.16	1.01	2.2	97.8	0.0	1.72	0.88	0.67	0.86	3.34	29234	1778	11	0	7	13	14614	logfile
✔	7QH2	13960	2024-02-16	2021-12-10	2.43	3.08	—	2.8	0.008	1.01	0.0	0.06	16.28	0.01	1.674	6.99	2.88	3.3	96.4	0.2	-4.15	0.84	0.85	4.97	2.8	0.003	0.56	0.0	0.04	15.32	0.00	2.002	7.28	1.33	2.3	97.6	0.1	0.20	1.04	0.84	0.86	4.52	16808	2138	14	0	8	2	0	logfile
✔	7T4Q	25685	2024-02-16	2021-12-10	2.9	3.12	—	3.0	0.003	0.62	0.0	0.04	12.89	0.01	2.184	5.12	0.00	3.9	96.1	0.0	-0.62	0.75	0.82	3.45	3.0	0.005	1.01	2.0	0.05	15.89	0.00	2.134	9.45	2.93	2.7	97.3	0.1	0.45	1.30	0.76	0.85	2.92	15473	1946	15	0	6	0	0	logfile
✔	7T4P	25684	2024-02-24	2021-12-10	3.62	3.22	—	3.4	0.009	0.98	0.0	0.05	20.56	0.00	1.709	19.19	0.82	6.1	93.5	0.4	0.12	0.73	0.84	3.29	3.4	0.003	0.59	0.0	0.04	18.39	0.00	2.073	13.12	2.29	4.8	95.0	0.2	0.20	0.65	0.74	0.85	3.03	22242	2577	18	0	54	0	0	logfile
✔	7T4L	25679	2024-02-13	2021-12-10	3.28	3.55	3.30	3.4	0.005	0.95	0.0	0.05	13.46	0.01	2.269	5.36	0.00	2.5	97.5	0.0	1.35	0.70	0.81	1.97	3.4	0.002	0.53	0.0	0.04	15.28	0.00	2.233	7.26	1.94	2.3	97.7	0.0	1.83	1.80	0.72	0.85	2.15	6062	755	2	0	0	0	0	logfile
✔	7T4S	25687	2024-02-16	2021-12-10	3.1	2.40	—	2.7	0.004	0.64	0.0	0.04	13.12	0.01	2.204	7.59	0.00	3.1	96.9	0.0	-0.13	0.80	0.78	3.71	2.7	0.004	0.65	0.0	0.04	15.84	0.00	2.121	10.08	2.11	3.1	96.9	0.0	0.23	1.42	0.82	0.81	2.68	16404	2045	14	0	10	0	0	logfile
✔	7T4K	25678	2024-02-13	2021-12-10	3.25	3.56	3.27	3.4	0.005	0.88	0.0	0.05	12.76	0.01	2.287	3.74	0.15	2.3	97.7	0.0	0.51	0.73	0.84	2.59	3.4	0.003	0.54	0.0	0.04	14.85	0.00	2.197	7.41	1.65	1.6	98.4	0.0	1.49	0.85	0.71	0.85	1.80	6180	782	2	0	0	0	0	logfile
✔	7W94	32360	2024-02-19	2021-12-09	3.4	3.02	—	3.6	0.003	0.67	0.0	0.05	13.57	0.01	2.288	3.37	0.14	3.4	96.6	0.0	-4.24	0.78	0.74	1.49	3.5	0.007	0.77	0.0	0.05	16.29	0.00	2.017	15.15	2.89	7.0	93.0	0.0	-1.71	0.70	0.80	0.80	1.55	25082	3206	3	0	0	0	0	logfile
✔	7QGN	13956	2024-02-27	2021-12-09	3.37	5.04	—	3.4	0.016	1.62	61.0	0.11	22.93	0.01	0.771	4.90	1.61	8.6	90.4	1.0	-3.93	0.63	0.45	0.27	3.4	0.003	0.67	0.0	0.04	23.40	0.00	1.924	21.93	2.68	9.5	90.4	0.1	-1.76	2.74	0.78	0.77	0.48	147306	5975	59	4695	3	9	0	logfile
✔	7W92	32359	2024-02-19	2021-12-09	3.1	2.79	—	3.3	0.003	0.67	0.0	0.05	13.05	0.01	2.306	2.89	0.11	3.7	96.3	0.0	-4.34	0.80	0.76	2.05	3.3	0.005	0.72	0.0	0.05	15.68	0.00	2.051	10.55	2.89	6.3	93.7	0.0	-1.34	1.44	0.81	0.81	2.21	25071	3206	3	0	0	0	0	logfile
✔	7W9B	32363	2024-02-21	2021-12-09	3.4	3.64	—	3.6	0.004	0.58	0.0	0.04	12.34	0.00	2.057	1.77	0.03	2.8	97.2	0.0	-3.40	0.66	0.69	1.74	3.6	0.004	0.70	0.0	0.04	16.40	0.00	2.051	12.55	2.30	5.1	94.9	0.0	-0.64	1.02	0.68	0.75	1.80	29737	3777	4	0	0	0	0	logfile

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